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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AB059351; SV 1; linear; genomic DNA; STD; PRO; 1509 BP.
XX
AC   AB059351;
XX
DT   06-OCT-2001 (Rel. 69, Created)
DT   13-MAR-2002 (Rel. 71, Last updated, Version 2)
XX
DE   Clostridium perfringens gngC gene for GlcNAc-alpha-1,4-Gal-releasing
DE   endo-beta-galactosidase, complete cds.
XX
KW   .
XX
OS   Clostridium perfringens
OC   Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae;
OC   Clostridium.
XX
RN   [1]
RP   1-1509
RA   Ashida H., Anderson K., Li S., Li Y.;
RT   ;
RL   Submitted (04-APR-2001) to the EMBL/GenBank/DDBJ databases.
RL   Hisashi Ashida, Tulane University Health Sciences Center School of
RL   Medicine, Department of Biochemistry; 1430 Tulane Avenue, New Orleans,
RL   Louisiana 70112, USA (E-mail:BYD01621@nifty.ne.jp, Tel:1-504-584-2451,
RL   Fax:1-504-584-2739)
XX
RN   [2]
RX   DOI; 10.1021/bi011940e
RX   PUBMED; 11841232.
RA   Ashida H., Maskos K., Li S.-C., Li Y.-T.;
RT   "Characterization of a novel endo-beta-galactosidase specific for releasing
RT   the disaccharide GlcNAc alpha 1-->4Gal from glycoconjugates";
RL   Biochemistry 41(7):2388-2395(2002).
XX
DR   StrainInfo; 95385; ATCC 10543.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1509
FT                   /organism="Clostridium perfringens"
FT                   /strain="ATCC10543"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:1502"
FT   CDS             121..1383
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /gene="gngC"
FT                   /product="GlcNAc-alpha-1,4-Gal-releasing
FT                   endo-beta-galactosidase"
FT                   /db_xref="GOA:Q934G8"
FT                   /db_xref="InterPro:IPR000757"
FT                   /db_xref="InterPro:IPR008985"
FT                   /db_xref="InterPro:IPR013320"
FT                   /db_xref="PDB:1UPS"
FT                   /db_xref="UniProtKB/TrEMBL:Q934G8"
FT                   /protein_id="BAB69460.1"
FT                   /translation="MFVFMLLLLLPFTISKAKDFPANPIEKAGYKLDFSDEFNGPTLDR
FT                   EKWTDYYLPHWCKDPESAKANYRFENGSLVEYITEDQKPWCPEHDGTVRSSAIMSFDKS
FT                   WIHNFSGTTDNHERNEWRGYTTKYGYFEIRAKLSNTGGGGHQAWWMVGMQDDTNDWFNS
FT                   KQTGEIDILETFFSKKDTWRIAAYGWNDPNFQTSWTISEDKVPSGDPTSEYHIYAMEWT
FT                   PTALKFYYDNELFKVIYGSPDYEMGTILNIYTDAGSGAHNDVWPKEWAIDYMRVWKPVD
FT                   GYKESESLNNYLIRNRQTGKFLYIEENNDKVSYGDITLKNEKNAKWSKEYRDGYTLLKN
FT                   NETGEYLNIENQTGYIEHGKVPKTWWSAQWSEVPVDGYTRFVNRWKPNMSIHTESYEGV
FT                   LQYGNVPNTYWTSQWQLIPVE"
FT   mat_peptide     172..1380
XX
SQ   Sequence 1509 BP; 569 A; 171 C; 287 G; 482 T; 0 other;
     aagttcacac aagaaaattt ataaagtttt gatatttata atttttttat aaatatattt        60
     tataggtcaa acttttaaat tggaggggta tttttgaata gaaaaggtgt attaagattc       120
     atgtttgtct ttatgttact attgctgcta ccgtttacta tttcaaaagc aaaggatttt       180
     ccagcaaatc caattgaaaa agctggatat aaattagact tttctgatga atttaatggt       240
     cctacattag atagagaaaa atggactgat tattatttac cacattggtg caaggatcct       300
     gaaagtgcta aggctaatta tcgttttgaa aatggatcac ttgttgaata tataactgaa       360
     gatcagaaac catggtgccc agagcatgat ggaactgtta gatcatctgc cataatgtct       420
     tttgataaaa gttggataca taattttagt ggaacaactg ataaccatga aagaaatgag       480
     tggagaggtt atacaactaa atatggatac tttgaaattc gtgctaagct atctaacaca       540
     ggtggtggag gtcatcaagc ttggtggatg gttggtatgc aggatgatac taatgattgg       600
     ttcaattcaa aacaaacagg agaaattgat atattagaaa ctttctttag taaaaaagat       660
     acatggagaa tcgctgcata tggatggaat gatccaaact tccaaacatc ttggactatt       720
     tcagaagata aagttccatc aggagatcca acttctgaat atcatattta tgcaatggaa       780
     tggactccta ctgctttgaa attctattat gataatgaat tatttaaggt tatatatggt       840
     tcaccagact atgaaatggg gacaatttta aatatataca cagatgcagg ttcaggtgct       900
     cataatgatg tttggcctaa ggaatgggca attgattata tgagagtttg gaaaccagta       960
     gatggatata aagagagtga aagtttaaat aattacttaa taagaaatag acaaacagga      1020
     aaattccttt atattgaaga aaataatgat aaagtgtctt atggggacat aactttaaaa      1080
     aatgaaaaaa atgcaaaatg gagtaaagaa tatagagatg gatacacttt attaaagaat      1140
     aatgaaacag gagaatattt aaatatagaa aatcaaactg gatatataga acatggtaag      1200
     gttccaaaaa cttggtggag cgctcaatgg agtgaagtac cagtagatgg atatacaagg      1260
     tttgttaaca gatggaagcc taatatgtca atacatacag aaagttatga aggcgtttta      1320
     cagtatggaa atgttccaaa tacttattgg acaagtcaat ggcaacttat tcctgtagaa      1380
     taaaaataaa attttaaaag tgttttatta aaaaattaag tttgacctat atatgaatca      1440
     aaagagggag ttttatttta agtaaagctc tctctttttg ttattttata atctctttat      1500
     aagtattta                                                              1509
//
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