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EBI DbfetchID AB057589; SV 1; linear; genomic DNA; STD; PRO; 6654 BP. XX AC AB057589; XX DT 21-MAR-2001 (Rel. 67, Created) DT 17-MAY-2006 (Rel. 87, Last updated, Version 5) XX DE Ruminococcus albus xynC gene for xylanase C, hypothetical proteins, DE complete and partial cds. XX KW . XX OS Ruminococcus albus OC Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; OC Ruminococcus. XX RN [1] RP 1-6654 RA Nagamine T., Takenaka A., Ogata K., Aminov R.I., Nakamura M., Tajima K., RA Matsui H., Itabashi H., Benno Y.; RT ; RL Submitted (15-MAR-2001) to the EMBL/GenBank/DDBJ databases. RL Takafumi Nagamine, STAFF-Institute, Rumen Microbiology Research Team; 446-1 RL Kamiyokoba, Tsukuba, Ibaraki 305-0854, Japan RL (E-mail:nagamine@gene.staff.or.jp, URL:http://www.gene.staff.or.jp, RL Tel:81-298-38-2196, Fax:81-298-38-2337) XX RN [2] RA Nakamura M., Nagamine T., Takenaka A., Aminov R.I., Ogata K., Tajima K., RA Matsui H., Benno Y., Itabashi H.; RT "Molecular cloning, nucleotide sequence and characteristics of a xylanase RT gene (xynA) from Ruminococcus albus 7"; RL Anim. Sci. J. 73:347-352(2002). XX FH Key Location/Qualifiers FH FT source 1..6654 FT /organism="Ruminococcus albus" FT /mol_type="genomic DNA" FT /cell_line="7" FT /db_xref="taxon:1264" FT repeat_region 200..293 FT /rpt_type=DIRECT FT /note="repeat fragments" FT repeat_region 294..386 FT /rpt_type=DIRECT FT /note="repeat fragments" FT repeat_region 387..449 FT /rpt_type=DIRECT FT /note="repeat fragments" FT CDS join(789..812,812..2968) FT /codon_start=1 FT /transl_table=11 FT /ribosomal_slippage FT /gene="xynC" FT /note="Another initiation codon at 789 and a frame shift FT between 791-875 are predicted." FT /db_xref="GOA:Q9AJB3" FT /db_xref="HSSP:1DYO" FT /db_xref="InterPro:IPR013781" FT /db_xref="UniProtKB/TrEMBL:Q9AJB3" FT /protein_id="BAB39494.1" FT /translation="MKISSSVKKAIFCDACGRSAFSQTAFLSNVTIEAEAASLCTVNVN FT KTYQKIDGFGGINHPEWYGDLTDSDRAIAFENGNNQLGCTILRVFVNPDKNQWYKVLPT FT AQYAAKRGITIFASPWEPPASLAENGSAYGGKLHLPRKNYGAYAQHLNDFGKYMKQNGV FT NLYAISVQNEPDYAKDWTAWTPDETTDFIANYGDQITSTKLMSPESFQYGAYNNGKDYY FT SKILNNSKAYANCDIFGTHFYGTPRSKMDFPALENCGKQLWMTEVYVPDSNVDSNIWPD FT NLKQAVSIHDSLVVGGMQAYVVWPLRRNYSILREDTHKISKRGYAFAQYSKFVRPGDVR FT VDVTEQPSSNVFVSAYKNNKNQVTIVAINNSSSGYSQQFSLNGKTIIDVDRWRTSGSEN FT LAETDNLTIDNGTSFWAQLPAQSVSTFVCTLSGGSSSGNNGSSNTELDSDGYYFHDTFE FT DDLTWQAHGGTELLKSGRTPYKGSEAVVVTNRTSAWMGAERTLPSSVVPGKTYSFSVNV FT TELDGEDTETFYLKLNYTDSSGTAHYPTIAEGVCPKGKYLQLSNTNYTIPSDAVDPVIY FT VETKDTTSNFYIDEAICAPAGKSLPGAGIPEIPSNNNNNNNNNNNNNNNNNNNNQNNSV FT YPVVSSIDYNVTYHQFRISWNSVPNAQAYGIAYYAAGKWRVYTQSISVNTTSWISPKLT FT AGKTYTMVIAAKVGGKWDTSNLSSRAINVTVK" FT CDS 1259..2968 FT /codon_start=1 FT /transl_table=11 FT /gene="xynC" FT /product="xylanase C" FT /db_xref="GOA:Q9AJB2" FT /db_xref="HSSP:1DYO" FT /db_xref="InterPro:IPR013781" FT /db_xref="UniProtKB/TrEMBL:Q9AJB2" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="BAB39495.1" FT /translation="MKQNGVNLYAISVQNEPDYAKDWTAWTPDETTDFIANYGDQITST FT KLMSPESFQYGAYNNGKDYYSKILNNSKAYANCDIFGTHFYGTPRSKMDFPALENCGKQ FT LWMTEVYVPDSNVDSNIWPDNLKQAVSIHDSLVVGGMQAYVVWPLRRNYSILREDTHKI FT SKRGYAFAQYSKFVRPGDVRVDVTEQPSSNVFVSAYKNNKNQVTIVAINNSSSGYSQQF FT SLNGKTIIDVDRWRTSGSENLAETDNLTIDNGTSFWAQLPAQSVSTFVCTLSGGSSSGN FT NGSSNTELDSDGYYFHDTFEDDLTWQAHGGTELLKSGRTPYKGSEAVVVTNRTSAWMGA FT ERTLPSSVVPGKTYSFSVNVTELDGEDTETFYLKLNYTDSSGTAHYPTIAEGVCPKGKY FT LQLSNTNYTIPSDAVDPVIYVETKDTTSNFYIDEAICAPAGKSLPGAGIPEIPSNNNNN FT NNNNNNNNNNNNNNNQNNSVYPVVSSIDYNVTYHQFRISWNSVPNAQAYGIAYYAAGKW FT RVYTQSISVNTTSWISPKLTAGKTYTMVIAAKVGGKWDTSNLSSRAINVTVK" FT stem_loop 2997..3029 FT /inference="non-experimental evidence, no additional FT details recorded" FT stem_loop 3045..3097 FT /inference="non-experimental evidence, no additional FT details recorded" FT CDS complement(3100..5259) FT /codon_start=1 FT /transl_table=11 FT /product="hypothetical protein" FT /note="unknown gene" FT /db_xref="GOA:Q9AJB1" FT /db_xref="HSSP:1DBQ" FT /db_xref="InterPro:IPR018060" FT /db_xref="UniProtKB/TrEMBL:Q9AJB1" FT /protein_id="BAB39496.1" FT /translation="MKKRKLFGVIAAAAADTEQREVIKGIIEKTREMDIDVAVISNIYN FT PMEWASMLKTENLIYDLVHSDEYDGIILISESVIYPDVQKKMLEELQNKSAPVITIGAL FT PEGFSLPTFTCINTDDVNDFKDICDHLTDVHGFTDIHILTGYSELELSHKRVEGYRRSL FT EEHGIPYDENKVFYGNFWNNSGYDHAMRYISGELPYPQALICGNDYMAYGLLDCFLEHN FT IDITKKMAVTGYEYIRERYCHVPILTTYQRNRKALGIKAVEMLCKGADNITHDDFEPPK FT GNIISGDTCPCGAKTEDIRYDIRTARKKDIYDRLDLYSLLEHKLIECRSVDKFVETCRE FT EKFRIKNADRLYMCLYENWYEGTGNSSNMVCYDLIDNTEPFMFNKYNISAVFGNEAASY FT YFCPLFFADRELGYIVLRFKGNDSFRHIFRCWLKTIANGLEFLRMKNDIRFYLQCQDIS FT EERDTLTGMLNENGLKKAYRNTEKDGLSFVAIRIAPGICNCGVGHKEHIDAVLDAAEAV FT RQFSDGQICSRINEDTFVCLIRDMTDNTDLLAVQLSALLQHNTSYIKKYGLDSFVCTAV FT PCEDNDYLTTKEKCFARMTEMTDVYSARRTDPHYKKLNALRTMIYSTPQITFDQREIYS FT HFNGSDGYLRTIFRKCYGFTLHDDCTNARISAARYLITMSKLSNSEIAEKCGYNDPKYF FT MRQFSGITGYTVPRYRLLFSRSAEE" FT CDS 5657..>6654 FT /codon_start=1 FT /transl_table=11 FT /product="hypothetical protein" FT /note="unknown gene" FT /db_xref="InterPro:IPR000160" FT /db_xref="UniProtKB/TrEMBL:Q9AJB0" FT /protein_id="BAB39497.1" FT /translation="MNNDNENLKNAMIIKNLTLFFGGFLLFTDVFFLAVGIVYDMPLIR FT YLIYVKLVINTTNIYLILKKHYLVSTVIIYVVIMAMMVVGIISMGTRPAFQLYALGMLI FT CVSYNGYLHNRILKKELPFMLMMGIHVLLYTGMLLYARFREPLYTYPQSAVDILVIFNS FT VATFSIVILYAFLFHNVAIHSEEKLEKMALMDKLTGLYNRHYLLAFLDHTGPRNPEDRW FT IAMLDIDDFKKINDSYGHNCGDFILHEIAAMIRDVCKNCIVCRWGGEEFIILSNINECS FT TEVLETLRKNIENREFIFEGNTIHATVTIGECRYETGQSNDKYGYPWLTKS" XX SQ Sequence 6654 BP; 1892 A; 1418 C; 1409 G; 1935 T; 0 other; gatcatgtta acgaaataag atgtcagcaa cctgtatgtt atcagcatgg cgccaagctt 60 caggcaatcg ttcttcaatg ctgtcatatc agtattttct atgttatgct gaacatatgc 120 tgttctgttg aacaaaaagc aatcagctcc tttatttata taatataaca gtatatcaca 180 tttcacttca aaagtaaagc cctcgccgcg ggtacgcagt acgtcatacg catggtaagt 240 tcgggtagta tgtttctcgg tgcccattgt aagctataaa gaagacccgg tgaccctcgc 300 gcgggtacgc agtacgtcac gcccatggca agttcgggta gtatgtttct cggtgcccat 360 tttaagctgt aaagaagacc cagtgaccct tgcgcgggta cgcagtacgt catgcccatg 420 gcaagtttgg agagtatgtt tctcggtgct gacaaatata aattaacgaa ctgattaaat 480 atagaacaac cgaaaagttc ataaaactga tttctgaacc attcaatgct tttcttttaa 540 ttgtcaggct tataaataaa tgtaaaggcg gatatatcag gatcatacgt atttaagcta 600 ttaatagata tggataatac agtacactat cttaataaaa aatatccata ttttacgtca 660 aatgtgcacg atgtgagttg acctgtggat gattttttgt ataatgaaat aacaaaataa 720 ggaacgtgct aattttactc aacagaaagt aaaagttttt aggcacgacg gaataaggag 780 gaattagtat gaaaatctca tcaagcgtaa aaaagctatc ttctgcgatg cttgcgggcg 840 cagtgctttt tcgcagaccg cgtttctgtc aaacgtgacg atcgaggcag aagctgcaag 900 cctttgcact gtaaacgtta acaaaactta tcagaagatc gacggcttcg gcggtatcaa 960 tcacccggag tggtacggtg atctgactga ttcagatcgt gctattgctt ttgaaaacgg 1020 caataaccag ctgggttgta cgatcctgag agtatttgta aaccctgaca aaaaccagtg 1080 gtacaaagtt ctcccgacag cacagtatgc tgctaagaga ggcatcacca ttttcgcttc 1140 accttgggag ccgcccgcaa gtctggctga aaacggttct gcttacggcg gtaagctcca 1200 tcttccaaga aaaaattacg gagcatacgc tcagcacctt aatgatttcg gtaaatacat 1260 gaagcagaac ggcgttaatc tgtatgctat ctctgtacag aacgagccgg actacgctaa 1320 ggactggaca gcttggacac cggacgagac tactgacttc attgctaact atggcgacca 1380 gataaccagc acaaagctca tgtcgccaga atcattccag tatggcgcat ataacaacgg 1440 taaggactac tactcaaaga tccttaataa ctcaaaggct tatgcaaact gtgacatatt 1500 cggaactcac ttctacggca cacccagaag taagatggac ttcccggcac ttgaaaactg 1560 cggcaaacag ctgtggatga ctgaagtata tgttcctgac agcaatgtcg attcaaacat 1620 atggcctgat aacctgaagc aggctgtaag cattcatgat tcactggttg taggcggtat 1680 gcaggcttac gttgtatggc cgcttcgccg taattacagc attctccgtg aagatacaca 1740 caagatatca aagcgtggtt atgcttttgc acagtactca aagttcgttc gtcccggcga 1800 tgttcgtgta gatgtcactg agcagccttc atctaacgtt tttgtatctg catacaagaa 1860 caataagaat caggtaacta tcgttgctat caataacagc agttcaggtt attcacagca 1920 gttctcactg aacggcaaga ccataatcga tgttgacaga tggcgcacat caggcagcga 1980 gaacctggct gagaccgata atctcactat cgacaatggt acaagcttct gggcacagct 2040 tcccgcacag agcgtttcta ctttcgtatg cacacttagc ggcggcagct cttccggcaa 2100 caacggttca tccaatacag agcttgattc tgacggttac tacttccacg atacatttga 2160 ggatgattta acatggcagg cacacggcgg cacagaactg ctgaagtccg gcagaactcc 2220 ctataagggc agcgaagctg ttgtagttac taaccgtaca agtgcatgga tgggtgcaga 2280 gcgtacactt ccttcttctg tcgttcccgg caagacctac agcttctctg taaacgtaac 2340 agagcttgat ggtgaggata ccgaaacatt ctatctcaag ctcaactata ccgattcaag 2400 cggaacagca cactatccta caattgcaga gggtgtttgc cccaagggca agtatctgca 2460 gctcagcaat actaattata ccatcccctc tgatgcagtt gaccctgtta tctatgtaga 2520 aaccaaggat accacttcta acttctacat tgatgaagct atctgtgctc ctgcaggcaa 2580 gagtctgccc ggcgcaggta tccctgagat acccagcaat aacaataaca acaataacaa 2640 caataataac aataataaca acaataataa caacaaccag aacaactcgg tatatccggt 2700 tgtatcatct attgattaca acgtgacata ccatcagttc agaataagct ggaattctgt 2760 tccaaatgct caggcatacg gtatcgcata ctatgcagca ggcaagtgga gagtatatac 2820 tcagagtatc tctgtgaata ctacttcatg gatctctccc aagctgacag caggcaagac 2880 ctataccatg gtaatagcag ccaaggtcgg cggtaagtgg gatacttcta atctgtcttc 2940 aagagctata aatgttactg taaagtaata tttaccaaaa gaataacaga gcattcagga 3000 caccttcgcg gttcaggcgg aggtgtcctt tgtatattgt agtcattatg caaaaaagga 3060 cagccctcag agtcgggact gtcctttttg tcatcatatt tattcttcgg ctgaacggct 3120 gaacagcaag cggtatctgg gtacagtata ccctgttatg ccgctgaact gccgcatgaa 3180 atatttagga tcattgtagc cgcatttttc tgctatctca gagttggaaa gttttgacat 3240 agtaataaga taccttgcgg cggatatcct ggcattggtg caatcatcat gcagagtgaa 3300 cccatagcat ttgcggaaga tagtccgtaa ataaccgtca ctgccgttga agtgagaata 3360 tatctcacgc tgatcaaatg tgatctgcgg agtgctgtat atcatagttc tcagggcgtt 3420 tagctttttg tagtgaggat cggtgcgtct tgcggaatat acatctgtca tctctgtcat 3480 tcttgcaaag cacttctcct ttgttgtaag ataatcgtta tcctcacagg gaacagcggt 3540 gcatacaaat gaatcaagtc catatttctt tatgtaggat gtattgtgct gcagcagtgc 3600 tgaaagctgt actgcaagca gatccgtatt atcagtcatg tcccttatca ggcagacaaa 3660 tgtgtcctcg tttatcctgc tgcatatctg accatcgctg aattgacgca ctgcttccgc 3720 agcatcaagc acagcatcta tgtgttcctt gtgtccgaca ccgcaattac agatacccgg 3780 ggctatcctt atggcaacaa agctcagacc gtccttttcg gtgttgcggt acgctttttt 3840 cagcccgttt tcattgagca tacctgtcag tgtatcgcgt tcttcggata tatcctgaca 3900 ctgcagataa aatcttatat cgtttttcat tcgcaggaat tcaagaccgt tggctattgt 3960 cttgagccag cagcggaaga tatgcctgaa ggaatcatta cctttgaatc tcagcacaat 4020 atatccaagc tctctgtctg caaagaacag cggacagaaa taatatgatg cagcttcgtt 4080 tccgaatacc gctgagatat tgtatttatt gaacataaat ggttcggtgt tgtcaataag 4140 gtcatagcat accatattcg atgaatttcc cgtaccttca taccagttct cataaaggca 4200 catatacagc ctgtcagcat tcttgatcct gaacttttct tcacggcagg tctcaacaaa 4260 tttgtctacg ctcctgcatt ctatcagttt atgctccagc aggctgtaaa gatcaagccg 4320 atcgtaaatg tcctttttgc gggcagttct tatgtcatat cgtatatcct ctgtctttgc 4380 gccgcaggga caggtatcac cgcttattat attgccctta ggcggttcaa aatcatcgtg 4440 agttatatta tcagcacctt tgcagagcat ctcgaccgct tttatcccca atgcctttct 4500 gtttcgctga taagtagtca gtattggtac atggcagtat ctttcacgaa tatattcata 4560 gcctgtaact gccattttct tggtgatatc tatgttatgc tcaaggaagc aatccagcag 4620 accgtatgcc atatagtcgt tgccgcatat cagtgcctgc ggataaggca gttctccgct 4680 gatgtaacgc atggcatggt catatccgga attattccag aaattgccat aaaatacttt 4740 gttttcatca tacggtatac cgtgttcctc aagggagcgc ctgtatcctt ccacacgctt 4800 gtgagatagt tcaagttcgc tgtagcctgt aagtatgtgt atatcagtaa agccgtggac 4860 atctgtaagg tgatcgcaga tatccttgaa atcgtttaca tcgtcagtgt tgatgcaggt 4920 aaatgtcggc agagagaaac cctcaggcag tgcacctatg gtaattacag gcgctgattt 4980 gttctgaagt tcttccagca tctttttctg aacatcggga tatatcacag attcggatat 5040 aaggataatg ccgtcgtatt cgtccgaatg aacaagatcg tatataaggt tctctgtttt 5100 gagcattgaa gcccattcca tgggattata gatatttgag atcactgcaa catcaatatc 5160 catttccctt gttttttcta ttataccttt tatgacctct cgctgctcgg tatctgctgc 5220 tgcggcagcg ataacgccaa agagtttcct ttttttcatg ctgctgcacc tcctgatcag 5280 atatatctgc tgcttgtttt tgattaatat attatatcat acacttcggc ggcttgcact 5340 aggtgtatgt aaatatattg taaatgggct taaattacca ttatgttttt gatatatttc 5400 ttcgtttttt ttattttcat tatattgaca tttatacggt catccagctg acagaccaca 5460 ctggcaggtt ttctcaacaa ctggcagaaa atagtataaa cataccgctt tataaccgtg 5520 tgtgaaaatg tgagcaaagt gatagacaca tattttttgt aaaaaacaga ttcgactctt 5580 gaaaatgtga atcaagtatg atataatata atggaagtaa ctatacgctg gtaaatttaa 5640 tatccgaggt gagcagatga acaatgataa tgagaatttg aaaaatgcca tgataataaa 5700 gaatctgacc ttgtttttcg gcggcttcct gctgtttacc gatgtatttt ttctcgcggt 5760 cgggatagta tacgatatgc cgcttatacg ttatctgatt tatgttaagc tcgttattaa 5820 tactactaat atatatctga tactaaaaaa gcattatctt gtatcaacgg tgataattta 5880 cgttgtaata atggcgatga tggtagtagg cattataagt atgggtacgc ggcctgcttt 5940 tcagctatat gcgctgggta tgcttatatg tgtcagctac aacggctatc tgcataaccg 6000 tatactgaaa aaggaactcc ctttcatgtt aatgatgggg atccacgttt tgctttatac 6060 aggtatgctt ctgtatgcca ggttcagaga accgctgtac acttatccgc agagtgcagt 6120 cgatattctt gtgatattca actcagtggc aacgttcagt attgttatac tttatgcttt 6180 tcttttccac aatgttgcga tccactctga ggaaaagctg gagaaaatgg cacttatgga 6240 taaactgaca ggtctttaca accgacatta tcttttagca tttcttgatc acacaggacc 6300 gagaaaccct gaagaccgct ggatagcgat gcttgatatt gatgatttca aaaagataaa 6360 tgactcctat ggtcacaact gcggtgattt tatcctgcat gagatcgctg cgatgatacg 6420 tgatgtatgc aagaattgta tagtatgccg ctggggcggt gaggaattca ttatactttc 6480 aaatataaac gagtgcagca ccgaagtact tgaaacgctg agaaagaata ttgagaacag 6540 ggagtttata tttgaaggca ataccataca cgctacggta accataggcg aatgtcggta 6600 tgagaccggg cagtccaatg ataaatatgg atatccgtgg ctgacgaaaa gctt 6654 // |
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