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EBI DbfetchID AB057588; SV 1; linear; genomic DNA; STD; PRO; 3948 BP. XX AC AB057588; XX DT 21-MAR-2001 (Rel. 67, Created) DT 14-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Ruminococcus albus xynB gene for xylanase B, complete cds. XX KW . XX OS Ruminococcus albus OC Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; OC Ruminococcus. XX RN [1] RP 1-3948 RA Nagamine T., Takenaka A., Ogata K., Aminov R.I., Nakamura M., Tajima K., RA Matsui H., Itabashi H., Benno Y.; RT ; RL Submitted (15-MAR-2001) to the EMBL/GenBank/DDBJ databases. RL Takafumi Nagamine, STAFF-Institute, Rumen Microbiology Research Team; 446-1 RL Kamiyokoba, Tsukuba, Ibaraki 305-0854, Japan RL (E-mail:nagamine@gene.staff.or.jp, URL:http://www.gene.staff.or.jp, RL Tel:81-298-38-2196, Fax:81-298-38-2337) XX RN [2] RA Nakamura M., Nagamine T., Takenaka A., Aminov R.I., Ogata K., Tajima K., RA Matsui H., Benno Y., Itabashi H.; RT "Molecular cloning, nucleotide sequence and characteristics of a xylanase RT gene (xynA) from Ruminococcus albus 7"; RL Anim. Sci. J. 73:347-352(2002). XX FH Key Location/Qualifiers FH FT source 1..3948 FT /organism="Ruminococcus albus" FT /mol_type="genomic DNA" FT /cell_line="7" FT /db_xref="taxon:1264" FT CDS 1348..3834 FT /codon_start=1 FT /transl_table=11 FT /gene="xynB" FT /product="xylanase B" FT /db_xref="GOA:Q9AJB4" FT /db_xref="HSSP:1GKL" FT /db_xref="InterPro:IPR001137" FT /db_xref="InterPro:IPR003305" FT /db_xref="InterPro:IPR003961" FT /db_xref="InterPro:IPR008979" FT /db_xref="InterPro:IPR008985" FT /db_xref="InterPro:IPR013319" FT /db_xref="InterPro:IPR018208" FT /db_xref="UniProtKB/TrEMBL:Q9AJB4" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="BAB39493.1" FT /translation="MKKPVSKRIASAFVGGVLMVSPIISSVTASAAKTLTTSPSHTQEV FT GWYNDYHHEIWQADTPNSSTMTLHDNDGGFSTQWKCGPNNSRGNFLARRGLYWGLNNPK FT TYKDYKPLYCDYDCSWYAGSSGNSRICIYGWAQNPLVEYYIIEDWKNWSPAQDGSAQYK FT GQTTIDGSVFKVYTTSRNSYTIEANKNFTQYISIRQNLRTKGTISVSEHFKAWESMGMK FT MGNLYEVAFNVEGWESDGQADVTLNMYEGESGYHPDPEPEESEIEGTLYSATFENGTNY FT WSGRGSASVASSSSKAYEGSKSLYVSGRTDNWNGGEVEVNTSTFKPGNSYSFSAMVNPA FT ESTTVQLSMQYDQNGTTKYTQIAEGSCTAGKWTKLENTSFTIPSGASNVKMYVEAPDSL FT CDIYVDRAIIADKGYVASGDTPVYNNANVPSNVKMEYNSQYKQMKFTWDAVNGADKYGI FT AVYLAGKWRVQDSNISGTSYTTPKGLTPGMSYKVAIAARVNGKWDTTAAIDNYVVVTTR FT SYNNIQYHTPSNTNTNTNTNTNTNTNNNQQPETSSYNYASNMQFKEAPGYYFNSCSQAG FT KVVKESYNGINGYNSLNVYLPYGYDSSKKYNIFYLMHGGGENENTLFYQDDTMMQNLFD FT NMIKNGELDPLIVVTPTFNKTEAGKFYNEFRQSVVPFVEGKYSTYAGRNTSQSSLQASR FT MHRAYGGFSMGGVSTWAVMENCLDIVGYFMPLSGDHWNGNSGYDKAKSIANAIDRSGLQ FT KNQYFIFAATGSDDIAYPNVNPQINEMKKMSQFVYTSDFSKGNLYFLVASGKTHWWGYV FT RHYVYDALPSFFHEGQ" XX SQ Sequence 3948 BP; 1180 A; 858 C; 902 G; 1008 T; 0 other; gatcttgact atgatatatc cgttgaagga caggcagagt ccctgacaga tgcatttcag 60 gcgatcgcaa actgcggcgg aaagggtata ggcgtattct actgggagcc tgcatggctg 120 ggtgtcagcg gtatttcgca gtcgcagcag agagataact gggacagata cggttcgggc 180 tgggcatcat cttatgcatc tgagtacgat caggacgtca cttcggcagg aggttcatcc 240 tttgataatc aggcactgtt cgatttcagg ggctatcctc ttgagtcgct tgatgtattc 300 acccgtattt acccgaaaaa aaataagccc gaaattaaat ggaagacccg tctgtacggc 360 gatctcgacg gtgacggctc gcttagcaga tctgatctca cgctattgaa aaatgccgta 420 ataaaaaaat gcaagcttga tgatgagcag ttcgcggtag gcgatgtcaa tgctgataaa 480 aaggtggata tcaatgatat catcctgctg gacagatatc tttccaacaa gcatggaagc 540 ggtatggatc ttattggcaa gagcaggagc tgtgaactca agtgataaaa agatgtggct 600 tatggtatgt tacacttgat atctatgccg cagcccttcg ggatcgtgaa gctcaggcgc 660 tgtgagcgtt ggctgatatc atgacagagg gcaggaagag aaaagcagaa taaacacaaa 720 gagcaggtca caggcgacac agtcgctgtt acctgttctt tttctgtata atgataaata 780 acgcaaaaaa aggctaaaga aaaaacgctg aaatatcgta ggagttttta taggtggtgg 840 tgtcgatcgt gtgctgcgga gttataatat tcaggtaatg tatttatctt cgcatatttt 900 ccaactgaaa ctctgatcat gatgaacggt tttcaacttc tcaatattag cgcgaaagat 960 gttaagaatt tgacataaaa attacattaa tgtcaggtgg atccttgttt gtgaacatac 1020 attttttatg ctgttgatcg gttggaattg cgcaattcag ggcttttatg tgttaaatga 1080 ttatttcgga aaagattaaa agattttcga taactataat ttaaatagta aataattaat 1140 gtcccaaagg tgaaaatcgc aatttttggt gctgcctata tcacaatgag caaaatttga 1200 ttagaaccaa tgactaataa attataaaat ataatcaaat gatatagcag ttaacattga 1260 agcgcaagag tcaatgtgcc gtatcattta agtatttatt ttatggttta tagttttaat 1320 ctttttagaa agcgaggtaa ttagtttatg aagaaacccg tttcaaagcg tattgccagc 1380 gcttttgttg gcggagtgct gatggtttca cctattatat catcagttac agcatctgct 1440 gctaagacac tcactacgag cccgtcacac acacaggaag tcggctggta caatgactac 1500 caccatgaga tctggcaggc agatacccca aactcttcta caatgacact gcacgataat 1560 gacggcggtt tcagcacaca gtggaagtgc ggacctaaca actcgagagg taacttcctt 1620 gcacgtcgtg gtctgtactg gggcctgaat aaccccaaga catataagga ttataagcct 1680 ctttactgtg actacgattg cagctggtat gcaggttcat ccggtaactc ccgtatctgt 1740 atctacggct gggcacagaa tcctctggta gagtactaca tcatcgagga ctggaagaac 1800 tggtcacctg cacaggacgg ttctgcacag tacaagggtc agaccactat cgacggcagt 1860 gtattcaagg tatatactac cagcagaaat tcttacacca ttgaagccaa caagaacttc 1920 acacagtata taagcatacg tcagaacctg aggaccaagg gtaccatcag cgtttccgag 1980 cacttcaagg cttgggagtc catgggtatg aagatgggca acctgtacga agtagctttc 2040 aacgttgaag gctgggagtc cgacggtcag gctgatgtta ctctaaatat gtatgagggc 2100 gaaagtggct accatcccga tcccgagccg gaggagtcgg agatcgaggg tacactgtac 2160 tccgctacat tcgagaacgg taccaattac tggagcggca gaggttctgc tagtgtagca 2220 tcatcttctt ccaaggctta tgagggcagt aagtccctgt atgtaagcgg cagaactgat 2280 aactggaacg gcggtgaagt agaagtcaat acatctactt tcaagcccgg caactcctac 2340 agcttcagcg ctatggtaaa tcctgccgag agcacaactg ttcagctttc catgcagtat 2400 gatcagaacg gtactacaaa gtacactcag atagctgagg gttcctgcac agcaggcaag 2460 tggaccaagc tggaaaacac cagcttcaca ataccttcgg gcgcatccaa tgtaaagatg 2520 tatgttgaag ctcccgacag cctgtgcgac atctatgttg acagagctat aatcgcagac 2580 aagggctatg ttgcttccgg tgataccccg gtatacaaca atgctaatgt tccttccaac 2640 gtaaagatgg aatacaacag ccagtacaag cagatgaaat ttacttggga cgctgtaaat 2700 ggcgctgaca agtacggcat cgcagtatac ctggcaggca agtggagagt tcaggattcc 2760 aacatctccg gtacttccta cactactccc aagggactga cacccggtat gtcttacaag 2820 gtagctatcg ctgctagagt aaacggcaag tgggatacta cagctgctat tgacaactat 2880 gttgttgtta cgaccagatc ctacaacaac attcagtatc acacaccttc taacacaaac 2940 acaaatacta atactaatac aaacacaaac actaacaaca atcagcagcc tgagacatct 3000 tcttataact acgcatcaaa tatgcagttc aaggaagctc ccggctacta tttcaacagc 3060 tgctcacagg ccggcaaggt agtaaaggaa tcctataacg gcatcaacgg atataactca 3120 cttaatgtat atctccccta cggctatgac agcagcaaga agtacaacat cttctacctg 3180 atgcacggcg gcggagagaa tgagaatact ctgttctatc aggatgatac aatgatgcag 3240 aatctcttcg acaacatgat aaagaacggc gaactcgatc ctctgatcgt tgttacacct 3300 accttcaaca agactgaggc aggcaaattc tacaacgagt tccgtcagag cgttgttcct 3360 ttcgttgaag gaaaatattc tacctatgca ggcagaaata cttcacagtc atcgctccag 3420 gcttcaagaa tgcacagagc atacggcgga ttctcgatgg gtggcgtttc aacatgggct 3480 gtaatggaga actgccttga catcgtcggc tacttcatgc ctctcagcgg cgaccactgg 3540 aacggaaact ccggttacga taaggctaag tccatagcca atgcgataga cagatcaggt 3600 cttcagaaga atcagtactt catcttcgca gcaacaggtt cggacgatat agcttatccc 3660 aacgtaaatc ctcagatcaa tgaaatgaag aagatgagcc agttcgttta cacatctgac 3720 ttctccaagg gtaatctcta cttccttgtt gcatcaggca aaacacactg gtggggctac 3780 gtaagacact atgtttacga tgcacttcct tctttcttcc atgaaggaca gtaaaatttc 3840 tattatagaa taacgatgag agccctcggg attgttccga tggctttttc atatatggct 3900 atacttttaa cacaccaaaa gtagcggaga acaggtcttt gccgctca 3948 // |
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