 |
|
EBI DbfetchID AB055444; SV 2; linear; genomic DNA; STD; PRO; 7031 BP. XX AC AB055444; XX DT 08-JUN-2001 (Rel. 68, Created) DT 14-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Magnetospirillum magnetotacticum periplasmic nitrate reductase gene cluster DE (napF, napD, napA, napG, napH, napB, napC), complete cds. XX KW . XX OS Magnetospirillum magnetotacticum OC Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; OC Rhodospirillaceae; Magnetospirillum. XX RN [1] RP 1-7031 RA Taoka A., Fukumori Y.; RT ; RL Submitted (06-FEB-2001) to the EMBL/GenBank/DDBJ databases. RL Azuma Taoka, Kanazawa Univerity, Faculty of Science, Department of Biology; RL kakuma chou, Kanazawa, Ishikawa 920-1192, Japan RL (E-mail:ataoka@nihonkai.kanazawa-u.ac.jp, Tel:076-264-5719, RL Fax:076-264-5978) XX RN [2] RA Taoka A., Fukumori Y.; RT "Cloning and sequencing of periplasmic nitrate reductase gene cluster from RT magnetotactic bacterium Magnetospirillum magnetotacticum"; RL Unpublished. XX FH Key Location/Qualifiers FH FT source 1..7031 FT /organism="Magnetospirillum magnetotacticum" FT /strain="MS-1" FT /mol_type="genomic DNA" FT /db_xref="taxon:188" FT CDS 512..1027 FT /codon_start=1 FT /transl_table=11 FT /gene="napF" FT /product="iron-sulfur protein" FT /db_xref="GOA:Q93HX5" FT /db_xref="HSSP:1CLF" FT /db_xref="InterPro:IPR017900" FT /db_xref="UniProtKB/TrEMBL:Q93HX5" FT /protein_id="BAB59020.1" FT /translation="MSGLLSRRTLLTRRTEARAPSGPRPPWSVARFAEVCDGCGACLSS FT CLEHCLAKGADGLPVVDFAQGGCTFCGACDAACAPRAIDRAAADGLDRLPVLARLGASC FT ISIQGVTCRLCGDPCLVRAIAFRPLPGGRVLPEIADQSCNGCGICVSACPVGALSMVAQ FT APSVRGLS" FT CDS 1024..1338 FT /codon_start=1 FT /transl_table=11 FT /gene="napD" FT /product="soluble protein" FT /db_xref="InterPro:IPR005623" FT /db_xref="UniProtKB/TrEMBL:Q93HX4" FT /protein_id="BAB59021.1" FT /translation="MRLATFVATEKSKPREQVENICGVLIHAKPERRHEVQDALGRIPG FT VEVHTMTDDGRMVVTVEDAQGNWAGATITSLTDIRGILNVSLVYHHFDSDLDLEGESFS FT " FT CDS 1335..3818 FT /codon_start=1 FT /transl_table=11 FT /gene="napA" FT /product="periplasmic nitrate reductase catalytic subunit" FT /db_xref="GOA:Q93HX3" FT /db_xref="HSSP:1OGY" FT /db_xref="InterPro:IPR017909" FT /db_xref="UniProtKB/Swiss-Prot:Q93HX3" FT /protein_id="BAB59022.1" FT /translation="MSLTRRDFIKANAVPATAAAAGLATPAIAQPAKANIRWDKGVCRF FT CGTGCSVLVGVQDGRVVATQGDPDSPVNRGLNCIKGYFLSKIMYGEDRLTRPLLRMKDG FT KFDKNGEFQPISWDQAFDIMAEKWKEQLKKPDGVTRVGMFGSGQWTIWEGYAASKLYKA FT GFRSNNLDPNARHCMASAVAGFMRTFGIDEPMGCYDDIEQTDAFVLWGSNMAEMHPILW FT SRVTDRRLTHEGCKVAVLSTFEHRSFELADIPMVFTPQTDLAILNYICHYIISKNAYNK FT EFIDKHVNFKKGATDIGYGLRPTHALEKDQANAATPDKADPMTFDEFKAFVAEYTVEKV FT SKLSGVPADKLEALAKLYADPKVKVVSFWTMGFNQHTRGTWVNNMIYNVHLLMGKISEP FT GNSPFSLTGQPSACGTAREVGTFAHRLPADMVVMNDKHREIAERCWKLPAGTINPKIGY FT HAVLQHRMLKDGKLNAYWVMCTNNMQTAPNMNEEGYPGYRNPANFIVVSDPYPTVTALA FT ADLILPTAMWMEKEGAYGNAERRTQFWAPEGQGSGRGRSDLWQIMEFSKRFKIEEVWPE FT ELIAKKPELRGKTLFEVLYKNGQVDKFPLTELQAGFENDEAKAFGFYPQKGLFEEYASF FT GRGHAHDLAPFESYHKARGLRWPVVDGKETLWRFREGYDPYVKAGEGVKFYGKPDGKAW FT IFALPYAPAAESPDKDFDLWLSTGRVLEHWHSGSMTRRVPELHKSVPNAVLYMHPNDAA FT KRNLRNGDVVKVASRRGEVTTRIDTRGRNKPPEGLVFMPFFDESQLVNKLTLDATCPIS FT KETDYKKCAVKVSKA" FT CDS 3884..4678 FT /codon_start=1 FT /transl_table=11 FT /gene="napG" FT /product="iron-sulfur protein" FT /db_xref="GOA:Q93HX2" FT /db_xref="HSSP:1K0T" FT /db_xref="InterPro:IPR017909" FT /db_xref="UniProtKB/TrEMBL:Q93HX2" FT /protein_id="BAB59023.2" FT /translation="MASHRDSAVDPNRRAMLAGAVKGACTVGLLGALLAIPARKRAEAV FT ALRPPGALAEKDFLGACVRCGLCVKDCPYDTLKLSDLGDGPAIGTPFFNARKVPCEMCE FT TIPCVAACPTGALDKGLSDIKNAKMGVAVLVGQETCLNFLGLRCDVCYRVCPRIGEAIT FT LEMSHNARTAKHAFFIPTVHSAKCTGCGKCERACVLEEAAIKVLPQSLATGIWGKHYRL FT GWEEKRNAGGSLVEPSPEVQVRGMEGVEMTPGGTYKLKESRP" FT CDS 4675..5514 FT /codon_start=1 FT /transl_table=11 FT /gene="napH" FT /product="iron-sulfur protein" FT /db_xref="GOA:Q93HX1" FT /db_xref="HSSP:1XER" FT /db_xref="InterPro:IPR017900" FT /db_xref="UniProtKB/TrEMBL:Q93HX1" FT /protein_id="BAB59024.1" FT /translation="MSAARGWFAAHQWLLARRLSQALVVAVFLTGPVWGVWIAKGNLAS FT SLTLGVLPLTDPLMVLQSLLAGHVMTASALMGAAIVLGVYLAIGGRMYCSWVCPVNAVT FT DLAQWLRTRLGLEKGLVLHRNTRQWLLGGVLAASAITGTIAWELVNPVTMLHRGLVTGS FT ILTFGSAALITLAVFLFDLGIAQRGWCTHLCPVGAFYGLLGKAAVLRVSAVGRAACDDC FT MDCFAICPERHVIAPALRGAAKGVGPVILSPDCTNCGRCIDVCSKTVFRFGTRFHTV" FT CDS 5540..6004 FT /codon_start=1 FT /transl_table=11 FT /gene="napB" FT /product="di-heme cytochrome c" FT /db_xref="HSSP:1JNI" FT /db_xref="InterPro:IPR005591" FT /db_xref="UniProtKB/TrEMBL:Q93HX0" FT /protein_id="BAB59025.1" FT /translation="MTAVKTKIKAIALALALALGMGVTALGVVAEEVKSLRPTAATEPD FT APPAIYKVMEGAKHERAYRQQPPLVPHTTDKYEIDLKVNQCLRCHEWPYSDQEKAPKIS FT DLHYIDRNGVRQDVVNGNRYFCKQCHVPQNDAKPLVTNKFQAATTNTNIR" FT CDS 6025..6666 FT /codon_start=1 FT /transl_table=11 FT /gene="napC" FT /product="tetra-heme cytochrome c" FT /db_xref="GOA:Q93HW9" FT /db_xref="InterPro:IPR011031" FT /db_xref="UniProtKB/TrEMBL:Q93HW9" FT /protein_id="BAB59026.1" FT /translation="MSTENPAKQGVLREWWATLRRPSGRWSLGLLLVVGFVGGVIFWGG FT FNTVLELTNTEAFCLSCHEMEQNVYREYRGSIHDSNRSGVRATCPDCHVPRPWIYKIQR FT KIQASNEVWHKLLGSIDTREKFEAKRIELAKHEWERMKSTDSRECRNCHNFGAFDLTRQ FT QARARNRHSEAEQQGKTCIDCHKGIAHQLPAGAFRAERELNESLGGAVKP" XX SQ Sequence 7031 BP; 1257 A; 2255 C; 2224 G; 1295 T; 0 other; gcatgctgat gaacgatgtg gatacggcgg tgcgcaagat gagggcgctg cgcgatctcg 60 gaatcggact gtccatcgac gatttcggca caggatattc gtcgcttagc tatctcgggc 120 gctttcccat caccacgctg aagatcgatc gcgccttcat cgccgatgtg gacaccaatc 180 ccaagaccgc cgagatcgcc agggccatca tcggcctgtc gcgcggcctc aatctcgagg 240 ttgtggcgga aggggcggaa atcgccgccc atatcgcctt cctgcgcagc aacggatgcg 300 acaccgtgca agggttcttc tactcccggc ccgtcccggc tgacgagttc gaacagatga 360 tgcgccagcg gatcatggcc cacgcctgac cgcgtcttcc ccctctctct tttgaccaac 420 gtcaaggcgc cagtctgggc gcggtgacac ctttccgcca tctggcgtca ttcctgggga 480 gaaggaatgg cctgccgcgg gaggaaatcc gatgtctggg ctgctgtccc gacggacgtt 540 gttgacgaga cggaccgagg cacgggcgcc ttcggggccc cgtccgccct ggagcgtcgc 600 gcgctttgcc gaggtctgcg acggctgcgg cgcctgtctt tcctcctgtc ttgaacattg 660 tctcgccaag ggcgccgacg gcttgcccgt ggtggatttc gcgcagggcg gctgcacctt 720 ctgcggcgca tgcgacgcgg cctgcgcgcc tcgcgccatc gaccgcgccg ctgcggacgg 780 tctggaccgt ttgccggttc tggcccggct gggggcgtcg tgcatttcca ttcagggcgt 840 gacctgccgg ttgtgcggcg atccttgcct tgtccgcgcc atcgcgttca gacctttacc 900 gggtggccgt gtcctgcccg aaatcgccga tcagtcctgt aacggatgtg gaatttgcgt 960 ctcggcctgt ccggtcgggg ccttgtccat ggtcgcccag gccccaagcg tgagaggact 1020 ttcatgagac tcgcgacctt cgttgccacc gagaagtcca agcccaggga gcaggtggag 1080 aatatctgcg gcgtgctgat ccacgccaag ccggagcgca ggcacgaggt tcaggacgcc 1140 ctcggccgga tacccggcgt cgaggttcac accatgaccg acgatggccg gatggttgtt 1200 accgtcgagg atgcccaggg caactgggcg ggcgccacca tcaccagcct gaccgacatc 1260 cggggcattt tgaacgtgtc cttggtctat caccattttg attccgatct tgatctggaa 1320 ggggagagtt tttcatgagc ctcaccaggc gcgacttcat caaggcgaac gccgttccgg 1380 ccactgccgc cgccgcggga ctcgccacgc cggccatcgc ccagccggca aaagccaata 1440 tccgctggga caagggtgtc tgccgattct gcggcaccgg ctgttccgtt ctggtcggcg 1500 tgcaggacgg ccgcgtcgtc gccacccagg gtgaccccga ttcgccggtc aaccgcggcc 1560 tgaactgcat caagggctac tttctgtcca agatcatgta tggcgaggac cggctgaccc 1620 ggcccctgct gcgcatgaag gacggtaagt tcgacaagaa cggcgagttc cagcccatct 1680 cgtgggacca ggcattcgac atcatggccg agaagtggaa ggagcagttg aagaagcccg 1740 acggcgtgac ccgcgtcggc atgttcggtt ccggccagtg gaccatctgg gaaggctatg 1800 ccgcgtccaa gctgtacaag gcggggttca ggtccaacaa tctcgatccc aatgcgcggc 1860 actgcatggc ttctgccgtg gcgggtttca tgcggacctt cggcatcgat gagcccatgg 1920 gctgctacga cgatatcgag cagaccgacg ccttcgtgct gtggggctcc aacatggcgg 1980 agatgcaccc cattctgtgg tcgcgcgtca ccgatcgccg tctgacccac gagggctgca 2040 aggtggccgt gctgtccacc ttcgagcatc gctcgttcga gctggccgac attcccatgg 2100 tgttcacgcc ccagaccgat ctggcgatcc tgaattacat ctgccactac atcatctcga 2160 agaacgccta caacaaggag ttcatcgaca aacacgtcaa cttcaagaag ggcgccacgg 2220 atatcggcta cggcctgcgt ccgacccatg cgctcgagaa ggatcaggcc aacgccgcga 2280 cgccggacaa ggccgatccc atgaccttcg acgagttcaa ggccttcgtg gccgagtaca 2340 cggtggaaaa ggtctccaag ctgtcgggcg ttcccgccga caagctggaa gccctggcca 2400 agctttatgc cgatcccaag gtcaaggtgg tgtccttctg gaccatgggc ttcaaccagc 2460 acacgcgcgg cacctgggtc aataacatga tctataacgt gcatctgctg atgggcaaga 2520 tctccgagcc gggcaattcc ccgttctcgt tgaccggcca gccctcggcc tgcggcacgg 2580 cgcgcgaggt cggcaccttc gcccatcgtc tgcccgccga catggtggtg atgaacgaca 2640 agcaccgcga gatcgccgaa cgctgttgga agctgcccgc gggcaccatc aaccccaaga 2700 tcggctatca cgccgtgctg cagcaccgca tgctgaagga tggcaagctc aacgcctatt 2760 gggtgatgtg caccaacaac atgcagaccg cgcccaacat gaacgaggag gggtatccgg 2820 gctaccgcaa ccccgccaac ttcatcgtgg tgtccgatcc ctatcccacg gtgacggccc 2880 tggcggccga cctgatcctg cccaccgcca tgtggatgga gaaggaaggc gcctatggca 2940 atgccgagcg ccgcacccag ttctgggcgc cagaaggtca aggctccggg cgaggcagat 3000 ccgacctgtg gcagatcatg gaattctcca agcgcttcaa gattgaggaa gtgtggccgg 3060 aggagctcat cgccaagaag ccggaactgc gcggcaagac cctgttcgag gtgctctaca 3120 agaacggcca ggtggacaag ttccccctga ccgaattgca ggccggtttc gagaatgacg 3180 aggccaaggc cttcggcttc tatcctcaga aggggctgtt cgaggaatac gcctccttcg 3240 gtcgcggaca cgcccacgat ctggcgccgt tcgagtccta tcacaaggcc cgcggcctgc 3300 gctggccggt ggtggacggc aaggagaccc tgtggcgctt ccgcgagggt tacgacccct 3360 atgtgaaggc gggggaaggg gtgaagttct atggcaagcc cgacggcaag gcctggatct 3420 tcgcgctgcc ctacgctccg gccgccgagt ccccggacaa ggatttcgac ctgtggctgt 3480 ccacgggccg tgtcctcgaa cactggcatt cgggctccat gacccggcgt gtgcccgagc 3540 tgcacaagtc ggtgcccaac gccgtgctct acatgcaccc caacgacgcc gccaagcgta 3600 acttgcgcaa tggcgacgtg gtcaaggtgg cgagccgtcg cggcgaggtc accacccgca 3660 tcgatacccg tggccgcaac aagccaccgg aagggctggt cttcatgccg ttcttcgacg 3720 aaagccagtt ggtcaacaag cttaccctcg acgccacttg ccccatctcc aaggagacgg 3780 attacaagaa gtgcgcggtc aaggtgagca aggcctaggg aaaggatcgt catcccgagc 3840 ggaacaagaa actccgctcg ggacgacgac aaggtgacgc caaatggcca gccatcgcga 3900 cagtgctgtt gatcccaacc ggcgagccat gcttgccggg gcggtcaagg gtgcctgcac 3960 ggtggggctg cttggcgcgc ttttggccat tcccgcccgc aaacgggccg aggcggtggc 4020 gcttcgcccg cctggcgcac tggccgagaa ggatttcctg ggcgcctgcg tccgctgtgg 4080 cctctgcgtc aaggattgtc cctacgacac gttgaagctg tccgatctgg gcgacggtcc 4140 ggctatcggc acgccgttct tcaatgcccg caaagttcct tgcgagatgt gcgagaccat 4200 cccctgcgtc gccgcctgtc ccacgggcgc gctggacaag gggctctcgg atatcaagaa 4260 cgccaagatg ggcgtggcgg tcctggtggg ccaggaaacc tgcctgaact ttctgggcct 4320 gcgttgcgac gtctgctatc gcgtctgccc gcgcatcggc gaggccatca cgctcgagat 4380 gagccacaac gcgcgcaccg ccaagcacgc cttcttcatt cccaccgtcc attccgccaa 4440 atgcaccggc tgcggcaaat gcgagcgggc ctgtgtgctg gaagaggcgg ccatcaaggt 4500 gctgccccag tccctggcca ccggcatttg gggcaagcat taccgcctgg gctgggaaga 4560 gaagaggaat gccggtggct ccctggtcga gcccagtccc gaagtgcagg tgcgcggcat 4620 ggaaggcgtc gagatgaccc ccggcggcac ctataagctc aaggagtcca ggccatgagc 4680 gccgccaggg gatggttcgc cgcccatcaa tggctgctgg cccggcgcct gtcccaggcc 4740 ctggtggtcg ccgtcttcct caccggtccg gtgtggggcg tgtggatcgc caaggggaat 4800 ctggcgtcaa gtctgacact tggcgttttg ccgctcaccg atccgctgat ggtgctgcaa 4860 tccctgctgg cgggccatgt gatgacggcc tcggccctga tgggcgcggc catcgtgctg 4920 ggcgtctact tggcgatcgg cgggcgcatg tattgctcct gggtctgtcc ggtcaatgcc 4980 gtcaccgacc tggcccaatg gctgcgcacc cggctggggc tggaaaaggg gctggtgctt 5040 caccgcaata cccgccagtg gctgctgggc ggcgtgctgg cggcctcggc tatcaccggc 5100 accatcgcct gggaactggt caatccggtg accatgctgc atcggggcct ggtgaccggg 5160 tccatcctga cctttggttc cgccgcgctg atcaccctgg cggtgttcct gttcgatctg 5220 ggcatcgccc agcgtggctg gtgcacccat ctgtgcccgg tgggagcctt ctacggcctg 5280 ctgggcaagg cggcggtgct gcgggtttcc gccgtgggcc gcgccgcctg cgacgattgc 5340 atggattgct ttgcaatctg ccccgaacgc catgtcatcg cgcccgcctt gcgcggcgcg 5400 gccaagggcg tggggcccgt cattctgtcg cccgactgca ccaattgcgg ccggtgcatc 5460 gatgtctgtt ccaagaccgt gttccgtttc ggcacacggt ttcacaccgt ttgattttcc 5520 gagagatctg gaaaggggag tgaccgcagt gaagaccaag atcaaggcaa tcgccctcgc 5580 gctggccctg gcgctgggca tgggagtgac cgctcttggc gtggtggccg aggaggtgaa 5640 gtcccttcgt cccaccgccg ccaccgagcc cgacgcgccg cccgccatct acaaggtgat 5700 ggaaggcgcc aagcacgaac gcgcctaccg ccagcagccg ccgttggtgc cccacaccac 5760 cgacaaatac gagatcgacc tcaaggtcaa tcagtgcctg cgctgccacg aatggccgta 5820 cagcgaccag gaaaaggccc cgaagatttc ggaccttcac tatatcgacc ggaatggcgt 5880 tcgccaggac gtggtcaacg gaaaccgcta tttctgcaag cagtgccatg tgccgcagaa 5940 tgacgccaag ccgctggtca ccaacaagtt ccaggccgcc acgaccaata cgaacatccg 6000 ctaggcatgg ggaaggatcg ggccatgagc actgagaatc cggccaagca aggcgtgttg 6060 cgtgagtggt gggcgaccct gcgccgtccc agcggacgct ggtccctggg cctgctgctg 6120 gtggtgggct ttgtcggcgg cgtcattttc tggggtggtt tcaacaccgt cctggaactg 6180 accaataccg aagctttctg ccttagctgt catgagatgg agcagaacgt atatcgcgaa 6240 tatcgcggca gcattcacga ttccaaccgt tccggcgtgc gggccacctg cccggattgc 6300 cacgttccgc gtccgtggat ctacaagatc cagcgcaaga tccaggcgtc caacgaggtg 6360 tggcacaagc ttctgggctc catcgacacg cgcgagaagt tcgaggccaa gcgcatcgaa 6420 ctggccaagc acgaatggga gcgcatgaag tccaccgatt cccgcgagtg ccgtaactgc 6480 cacaatttcg gggctttcga cctgacccgg cagcaggccc gcgcgcgcaa tcgtcactct 6540 gaggccgaac agcagggcaa gacctgcatc gactgccata agggcatcgc ccaccagctt 6600 cccgccggtg ccttcagggc cgagcgcgag ctcaatgaga gcctgggcgg ggcggtcaag 6660 ccgtagcgct accgcctgaa ctctacaaag aagggcctcc cgagactccc cgggaggccc 6720 tttttgtcta tgccctggcc atctcctcgt accagtcgcg ggggaaagcc gcttcggcgc 6780 gggcctggtg gttgaagggg ggcttcagtc cggcggggta gcgttcccgc atccgctctt 6840 gataggcggt cttggggtcg aggccgcgct tcttcgccac atgggtgaac cagcgcaccc 6900 ccgccgccac atggcggatt tcgtcgtggt agatgatgtc gagcgcgggc ggtgtcaggt 6960 tgtcgccgtt gcgggccagc ttttccatgg tggcgggcgt tgtgtcgcag ccgcgcgcct 7020 ccaggactct a 7031 // |
|