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EBI DbfetchID AB041993; SV 1; linear; genomic DNA; STD; PRO; 3800 BP. XX AC AB041993; XX DT 14-JAN-2001 (Rel. 66, Created) DT 09-JUN-2005 (Rel. 84, Last updated, Version 3) XX DE Clostridium josui xynA gene for xylanase A, complete cds. XX KW Xylanase A. XX OS Clostridium josui OC Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; OC Clostridium. XX RN [1] RP 1-3800 RA Karita S.; RT ; RL Submitted (19-APR-2000) to the EMBL/GenBank/DDBJ databases. RL Shuichi Karita, Mie University, Faculty of Bioresouces, Department of RL Sustainable Resource Science; 1577 Kurimamachiya, Tsu, Mie, 514-8507, Japan RL (E-mail:karita@bio.mie-u.ac.jp, Tel:81-59-231-9619, Fax:81-59-231-9604) XX RN [2] RX DOI; 10.1271/bbb.64.2614 RX PUBMED; 11210125. RA Feng J.-X., Karita S., Fujino E., Fujino T., Kimura T., Sakka K., RA Ohmiya K.; RT "Cloning, sequencing, and expression of the gene encoding a cell-bound RT multi-domain xylanase from Clostridium josui, and characterization of the RT translated product"; RL Biosci. Biotechnol. Biochem. 64(12):2614-2624(2000). XX FH Key Location/Qualifiers FH FT source 1..3800 FT /organism="Clostridium josui" FT /strain="FERM P-9684" FT /mol_type="genomic DNA" FT /db_xref="taxon:1499" FT CDS 512..3664 FT /codon_start=1 FT /transl_table=11 FT /gene="xynA" FT /product="xylanase A" FT /db_xref="GOA:Q9F1V3" FT /db_xref="HSSP:1I8A" FT /db_xref="InterPro:IPR013781" FT /db_xref="UniProtKB/TrEMBL:Q9F1V3" FT /protein_id="BAB20931.1" FT /translation="MYRNRNKVLALLLVFAMLISVMPISTVMADTKTTYHETFADGKGI FT ATQSGGANLEKVGNKVFEGNDDGAALYVSNRINNWDAADFKFEDIGLKDGKTYNITVKG FT FVDSNAKVPAGAQAFLQVADSYAWLAGAEFVAGKAFTLSGKYTVDTSKDSRVRVQSNDE FT GKEVPFYIGDILITEEATEEVPVDPNQPKAETFKTITFEDNTTEGFEPRGGEGSEKLTV FT TKEANHTANGSYALKVENRTMTWHGPSLHVEKNVSQGSEYKVTAWVKLISPESTQLQLS FT TQVGNGGSASYVSLAAKTISTADGWVKFEGTYRYNNVSSGYITIYVESASSANASFYID FT DISFEQTGSGPIKIQDDLKSIKDVYKKDFLIGNAIAAEDMEGVRLDLLKKHFNVMTAGN FT AMKPDALQPSKGNFTFEDADKLVDKVLAEGFKMHGHTLVWHQQSPAWLNTKVDASGNAI FT PLSREEALTNLRTHIKTVVEHYGNKVISWDVVNEGMNDNPTNPADWKASLRQSPWYQAI FT GPDYIEEAFLAAREVLDAHPDWDVKLYYNDYNDDNQSKSKAIYYMVKELNEKYAKTHPG FT KLLIDGVGMQAHYSLSTNPTNVELSLERFISLGVEVSITELDVQAGSDFKLTDEIAEAQ FT GYLYAQLFDIYKKHAANISRVTIWGLDDGTSWRSSTNPLPFDKNLQAKLAFFGLIDPAK FT YMDEHKPQTPKDAKHTTAKYGTPVIDGTIDSVWSKAHAIPVNTYQMAWQGATGTAKALW FT DDKNLYVLVQVSDSELDKKSANAYEQDSVEVFFDENNGKTSFYQDDDGQYRVNFDNETS FT FNPASIAEGFESATKVSGTSYIVEMKIPFKTLTPSDNMKVGFDVQVNDGKDGSRKSVAT FT WNDTKGTGYQDTSVYGVLTLTKSDSNSTSEYITRGQFIDSIIKALGLNKNVQAKDSFKD FT VKKDSSYYASVSAAYQKGIISGYKNGEFKPQAKITRQEAMTIIAKAIKVTGKNVNYSTA FT EINKILKEFKDSNKVANWAKASVAACIKEGIISGKSGKMIAPQENITVSQTESIVKKLS FT AK" XX SQ Sequence 3800 BP; 1361 A; 605 C; 777 G; 1057 T; 0 other; gatcctccgc cttgattgcg ttagagaaga aaatcaattc atgtagagtt tccattaata 60 aaaaaataac aagaaaaaga tataagattt ttcggtacaa attatgtaaa atcagtcgtt 120 gacttataaa aacaatagta gtattttaaa tatagtatta tattccagtt tatacagtgc 180 atcagtccta tttcaaggag gaaatttaag ctgttataaa ttcataaatt atcaaacatt 240 attaatttaa ttgacgttat ttcctaattt taccacacta tataaagaac tctcttaatt 300 gtagcttata aagtagatag aattacatca ttaattcctg tttttcacat aaattgatac 360 catagccact tagtttaggg aattattaaa agttaataat aaagcaactt tatactttga 420 aagggggata gtacggtaat aatcaagttc atagaaaaat tcgcacataa ttttggcaag 480 taaaaacatt taaaatcagg aggacgattg aatgtacaga aacagaaata aggtcttagc 540 actgctttta gtttttgcaa tgctcatttc cgttatgcca atcagcacag taatggctga 600 cacaaaaact acttatcacg agacttttgc agatggaaag ggtatagcta cccaatctgg 660 aggagctaat ctagagaaag taggaaataa ggtttttgaa ggaaatgatg atggagcagc 720 attatatgta agcaatagaa taaataactg ggacgcagct gatttcaaat ttgaagatat 780 tggattaaag gacggtaaga cttataacat aaccgtaaaa ggttttgttg actcaaatgc 840 aaaggttcct gcaggtgcac aggcatttct tcaggttgcg gacagctatg catggctggc 900 aggtgcagaa ttcgttgctg gaaaggcttt cacattaagc ggaaagtata ctgttgatac 960 ttcaaaggac agcagggtac gtgttcaatc caatgatgaa ggtaaagaag ttcctttcta 1020 tattggggac attttaatta cagaagaggc tacagaagaa gtacctgttg atcctaatca 1080 accaaaggca gaaactttca aaacaataac atttgaagat aatacaacag agggctttga 1140 acctagaggc ggtgaaggct cagaaaaact gactgtaaca aaagaagcca atcacacagc 1200 taatggttca tacgcattaa aagtagaaaa ccgaacaatg acttggcatg gtccttcatt 1260 gcatgttgag aagaatgtaa gccaaggtag tgaatacaag gttactgctt gggtaaaact 1320 tattagccct gaaagtacac aacttcaact ttccactcag gttggaaatg gaggaagtgc 1380 ttcttatgta agccttgcag caaaaacaat aagtactgct gatggctggg ttaagttcga 1440 gggtacatat cgttacaaca atgtttccag cggatacatt actatatatg tagaaagtgc 1500 aagcagtgct aatgcttcct tctatattga cgatattagc tttgaacaaa cgggttcagg 1560 accaatcaaa atccaagatg atttaaaatc cattaaagat gtatataaaa aggatttcct 1620 tattggaaac gcaatagcag cagaggatat ggaaggggtc agacttgacc tgttaaagaa 1680 gcactttaat gtaatgacag ctggtaatgc tatgaagcca gatgcattac aaccttcaaa 1740 gggtaacttt acatttgaag atgcagataa gcttgttgat aaggttctgg cagagggatt 1800 caagatgcat ggacatactc ttgtttggca tcagcagtca cctgcttggt taaatacaaa 1860 agttgatgca agcggaaatg ctataccttt gtcacgtgag gaagctctta caaatctaag 1920 aacccatatt aagacagttg tagagcacta cggtaacaag gtaatatcat gggacgtagt 1980 aaatgaaggt atgaatgata atcctactaa tcctgctgac tggaaagcat cattacgtca 2040 aagcccatgg tatcaggcaa ttggtcctga ttacatagaa gaggcgtttt tagcagcaag 2100 agaggttctg gatgctcacc ctgattggga tgtgaagcta tattataatg attataacga 2160 tgataatcaa agcaaatcta aagctattta ctacatggta aaagagttaa atgaaaaata 2220 tgcaaaaact caccctggta agcttcttat cgatggagtt ggtatgcagg cacattacag 2280 cttatcaaca aatcctacca atgttgagct ttcattggag agatttattt ctctgggtgt 2340 tgaagtaagc ataaccgagc ttgatgtaca ggcaggcagt gacttcaagt taactgatga 2400 aattgcagaa gcacagggat atttatacgc acagttattt gatatatata agaaacatgc 2460 agctaacata agccgtgtta ctatttgggg attggatgac ggcacaagct ggagatcatc 2520 tacaaatcct ttgccatttg acaagaatct tcaggcaaag ctcgcatttt tcggtttaat 2580 agaccctgct aagtacatgg atgaacataa acctcaaaca cctaaagatg ctaagcatac 2640 aactgcaaaa tacggaacac ctgtaattga cggtactata gacagtgttt ggagtaaagc 2700 acatgcaata cctgtaaata catatcaaat ggcatggcag ggagctacag gaactgcaaa 2760 ggctctatgg gatgacaaaa acctgtatgt tcttgttcag gtaagtgact cagagcttga 2820 taagaagagt gctaatgcat acgaacaaga ctctgttgaa gtattctttg atgagaacaa 2880 cggaaaaact tcattctacc aggatgatga cggacagtac agagttaact ttgataatga 2940 gacttcattt aaccctgcat caattgcaga aggatttgag tccgcaacaa aggtttcagg 3000 aacaagttat attgttgaaa tgaagatacc ttttaaaact ttaactcctt ctgataatat 3060 gaaagttggt tttgatgttc aggttaacga tggtaaagat ggttcacgta agagcgttgc 3120 tacttggaat gatactaaag gaacaggata tcaggatact tcagtatatg gtgttctaac 3180 cctgacaaaa tccgatagca atagcactag tgaatacatc acaagaggac aatttattga 3240 ttccataatt aaggctttag gattgaataa aaatgttcag gctaaagatt cctttaagga 3300 tgtaaaaaag gattccagct attatgcttc tgtaagcgct gcttaccaga aaggaataat 3360 atcaggatat aagaatggag aattcaaacc acaggctaag attactcgtc aggaagcaat 3420 gacaataatc gccaaggcta taaaggtaac aggaaagaat gttaactact caactgctga 3480 aataaataaa atactcaagg aatttaagga ttcaaacaaa gttgccaact gggcaaaagc 3540 ttcggttgct gcttgtatta aagaaggaat tatatccgga aagagcggaa aaatgattgc 3600 accgcaagaa aatataactg tttcacaaac agaatcaata gtaaagaaat tgtccgctaa 3660 ataataactg aattgcattt taagccggct tcccaagatt ttgggggtcg gctttttttg 3720 tggataattg tttttgaaag gtcagactaa tgataattaa aagcgaatat ctgaactaat 3780 ataaagaaat actatttaaa 3800 // |
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