 |
|
EBI DbfetchID AB038527; SV 1; linear; genomic DNA; STD; PRO; 4080 BP. XX AC AB038527; XX DT 14-MAR-2000 (Rel. 63, Created) DT 12-JAN-2008 (Rel. 94, Last updated, Version 4) XX DE Mycobacterium smegmatis araB, araD, araA genes for L-ribulokinase, DE L-ribulose-5-phosphate-4-epimerase, L-arabinose isomerase, complete cds. XX KW . XX OS Mycobacterium smegmatis OC Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; OC Corynebacterineae; Mycobacteriaceae; Mycobacterium. XX RN [1] RP 1-4080 RA Soda A., Takata G., Izumori K.; RT ; RL Submitted (19-FEB-2000) to the EMBL/GenBank/DDBJ databases. RL Contact:Akane Soda Kagawa University, Faculty of Agriculture; Ikenobe 2393, RL Miki, Kagawa 761-0795, Japan URL :http://www.kagawa-u.ac.jp/ XX RN [2] RA Tanaka G., Poonperm W., Rao D., Souda A., Nishizaki T., Morimoto K., RA Izumori K.; RT "Cloning, Expression, and Transcription Analysis of L-Arabinose Isomerase RT Gene from Mycobacterium smegmatis SMDU"; RL Biosci. Biotechnol. Biochem. 71:2876-2885(2007). XX FH Key Location/Qualifiers FH FT source 1..4080 FT /organism="Mycobacterium smegmatis" FT /strain="SMDU" FT /mol_type="genomic DNA" FT /db_xref="taxon:1772" FT CDS 153..1844 FT /codon_start=1 FT /transl_table=11 FT /gene="araB" FT /product="L-ribulokinase" FT /db_xref="GOA:Q9LBQ3" FT /db_xref="InterPro:IPR005929" FT /db_xref="UniProtKB/Swiss-Prot:Q9LBQ3" FT /protein_id="BAA92524.1" FT /translation="MTPPGAPKYVIGVDFGTLSGRALVVRVADGAEMGSAEHTYRHGVV FT TEALPGHPEVRLPADYALQVPADYIDVLRFAIPEAVANAGIDPADVVGLGTDFTACTMV FT AATSDGTPLCQLDEFADRPHAYAKLWRHHAAQPQADRINALAAARGETWLPRYGGLISS FT EWEFAKGLQILEEDPEIYAAIDRWVEGADWIVWQLTGRYVRNISTAGYKAIRQDGKYPS FT RAFLAELNPGFASFVEDKIEQPIGRLGEAAGTLTAQAAAWTGLPEGIVVAVGNIDAHVT FT AAAADAADPGRLIAIMGTSTCHVMNGRFLREVPGMCGVVDGGITDGLWGYEAGQSGVGD FT IFAWFTKNCVPKEIAIEASRRGLTLHEHLSELAAEQEVGEHGLVALDWHSGNRSVLVDH FT HLSGIMVGQTLDTTCVDQYRALLEATAFGTRMIVETFQRSGVPVEELVVAGGLIKNPLL FT MQIYADVTGLPLSCVTSTQAPALGAAIHAAAAAGEYRDVPTASARMGGRTKNAFTPIPE FT NVTRYNALYAAYVELHDWFGRNNPLMRRLRVMRSNAERRETVGSAQ" FT CDS 1868..2536 FT /codon_start=1 FT /transl_table=11 FT /transl_except=(pos:1868..1870,aa:Met) FT /gene="araD" FT /product="L-ribulose-5-phosphate-4-epimerase" FT /note="putative" FT /db_xref="GOA:Q9LBQ2" FT /db_xref="HSSP:1K0W" FT /db_xref="InterPro:IPR001303" FT /db_xref="UniProtKB/TrEMBL:Q9LBQ2" FT /protein_id="BAA92525.1" FT /translation="MIRQLRKQVCDLHAELTRYQLVIWTAGNVSARVPDRDLMIIKPSG FT VDYDSMTPEQMVVCDLHGELVDGDLAPSSDTAAHAYVYRHMPEVGGVVHTHSTYATAWA FT ARGEAIPCVLTMIADEFGGDIPVGPFALIGDDSIGRGIVETLQHSNSRAVLMRNHGPFT FT VGRDARDAVKAAVMVEDVARTVHISRQLGTPDVIPPADVRRLFDRYQNVYGQPQASQEG FT " FT CDS 2539..4044 FT /codon_start=1 FT /transl_table=11 FT /gene="araA" FT /product="L-arabinose isomerase" FT /db_xref="GOA:Q9RHG2" FT /db_xref="InterPro:IPR003762" FT /db_xref="UniProtKB/Swiss-Prot:Q9RHG2" FT /protein_id="BAA92526.1" FT /translation="MAEHFTDEEIWFVTGSQSLYGQEILDQVAEQSRALAERLDASADL FT PVAVRWKPVVTTSEAILDVLRDASSSPQCVGVITWMHTFSPAKMWIRGLSALQKPMLHL FT HTQFGVEIPWDTIDMDFMNLNQAAHGDREFGYIQTRLSVPRTTVAGHVGDPRTTARIGS FT WMRAALGAAELRSLRIARFGDNMRDVAVTEGDKVEAESHFGVSVNTYSVNDLAKAVYDV FT SDPEIDKLVQEYEDTYAVAEELRRGGERHASLREGARIELGLRHFLADGFGAFTTNFED FT LGDLRQLPGLAVQRLMADGFGFGAEGDWKTSAMVRTVKTMGVGLPGGTSFMEDYTYDLT FT PGSERILGAHMLEVCPSIAGQTPSLEVHPLGIGNREDPVRLRFTAAPGSGVVLGICDMG FT SRFRLVANHVTVVEPSAPLPNLPVACAVWEPEPSWSTSTEAWLMAGGPHHTVLTTAVSP FT TTLDDFATITGTELLQIDQHTTPREFQREMRWNAVYHHIAAGL" XX SQ Sequence 4080 BP; 697 A; 1391 C; 1366 G; 626 T; 0 other; gatgaacgcg ttgacgaacc atagatgtga tcgttaacat tcgagcttgt gactcagacc 60 acagcgtttc gatcaggtgg aacgtggcga caggaaccgg tgttcagcgg tgtgatcgtc 120 aggtgccggc aaacagagca aaggggcctt cggtgacccc gcccggcgcg ccgaagtacg 180 tcatcggcgt ggatttcggc acgctgtcgg gccgggcgct cgtcgtccgc gtcgccgacg 240 gcgccgagat gggctcggcc gagcacacct accggcacgg tgtcgtcacc gaggcactcc 300 cgggccatcc cgaggtgcga ctgcccgccg actacgcgct gcaggtgccc gccgactaca 360 tcgacgtgct gcggttcgcg atcccggagg ccgtggccaa cgccggaatc gatccggccg 420 acgtggtggg gctgggaact gatttcacgg cgtgcaccat ggtcgccgcc accagtgacg 480 gaaccccgct gtgccaactc gacgagttcg ccgaccgtcc gcacgcgtac gccaagctgt 540 ggcgccacca cgccgcgcaa ccgcaggccg accgcatcaa cgcgctggcc gcggcacgcg 600 gtgagacttg gctgccccgg tacggcggat tgatctccag cgaatgggaa ttcgccaagg 660 gtctgcagat cctggaggag gaccccgaga tctacgccgc gatcgaccga tgggtcgaag 720 gtgcggactg gatcgtctgg cagctcaccg gccgctacgt ccgcaacatc agcaccgcgg 780 gatacaaggc gatccgccag gacggcaagt acccgtcacg cgcgttcctc gccgaactca 840 accctggttt cgcgagtttc gtcgaggaca agatcgaaca acccatcggc aggctcggtg 900 aggcggcggg cacgctcacc gctcaggccg cggcctggac cggcctgccc gagggcatcg 960 tggtcgccgt cgggaacatc gacgcccacg tcaccgcggc cgcggccgac gccgcggatc 1020 cggggcgcct gatcgcgatc atgggcacct cgacgtgcca cgtgatgaac ggccggttcc 1080 tgcgtgaggt gccgggcatg tgtggtgtgg tcgacggtgg catcaccgac ggcctgtggg 1140 gctatgaggc cgggcagtcc ggggtcggcg acatcttcgc gtggttcacg aaaaactgtg 1200 tgcccaagga gatcgcgatc gaggcgtcgc ggcggggcct gaccctgcac gaacatctgt 1260 cggagctcgc ggccgagcag gaggtcggcg agcacggact cgtcgcgctg gactggcaca 1320 gcggcaaccg ctcggtgctg gtggaccacc acctgtcggg gatcatggtc gggcagacgc 1380 tcgacaccac gtgcgtcgac cagtaccgcg ccctgctgga ggccaccgcg ttcggcaccc 1440 gcatgatcgt cgagaccttc cagcgcagcg gcgttccggt cgaggaactc gtcgtggcgg 1500 gcggtctcat caagaacccg ctcttgatgc agatctatgc cgacgtcacc ggactcccgc 1560 tgtcatgcgt gacctccacg caggcgcctg cactcggcgc ggcgatccac gcggccgcgg 1620 ctgcgggtga ataccgtgat gtgccaacgg catcggcgcg gatgggcggg cgcaccaaga 1680 acgcgttcac gccgatcccg gagaacgtca cgcgctacaa cgcgctgtac gcggcctacg 1740 tcgaactgca cgactggttc gggcgcaaca acccgctcat gcggcgcctg cgggtgatgc 1800 gcagcaatgc cgaacgccgc gagacggtgg ggtcggccca atgagcgtca ccaccgagat 1860 cgatgccgtc atccggcaac tgcgcaagca ggtatgtgat ctgcacgccg agctgacccg 1920 ctaccagctg gtgatctgga ccgccggaaa cgtctccgcg cgtgtgcccg accgcgacct 1980 gatgatcatc aaaccctctg gcgtggacta cgactcgatg acgcccgagc agatggtggt 2040 gtgtgacctc cacggtgaac tcgtcgacgg tgatctcgca ccgtcgtcgg acaccgcggc 2100 gcatgcctac gtgtaccggc acatgcccga ggtcggcggc gtcgtgcaca cccactccac 2160 ctatgccacg gcgtgggcgg cgcgcggcga ggcgatcccg tgcgtgctca cgatgatcgc 2220 cgacgagttc ggcggcgaca tcccagtggg gccgttcgca ctgatcggcg acgactcgat 2280 cgggcgggga atcgtggaga ccctgcagca cagcaactct cgcgccgtgc tgatgcgcaa 2340 ccacggtccg ttcacggtcg ggcgcgatgc gcgcgacgcg gtcaaggccg ccgtgatggt 2400 cgaggacgtc gcgcgcacgg tccacatcag ccgccaactc ggcacccccg atgtgatccc 2460 cccggccgat gtccgccggc ttttcgaccg ctatcagaac gtctacgggc aaccgcaggc 2520 cagtcaggaa gggtgacggt ggccgaacac ttcaccgatg aggaaatctg gttcgtcaca 2580 ggcagccagt cgttgtacgg ccaggagatc ctggaccagg tcgccgagca gtcacgggca 2640 ctggccgaac gcctggacgc cagcgcggat ctgcctgtgg ccgtgcggtg gaagcccgtg 2700 gtgaccacca gcgaggccat cctcgacgtc ctgcgcgacg cgagttcgtc cccgcagtgc 2760 gtcggcgtga tcacgtggat gcacacgttc tcgccggcca agatgtggat ccgcggcctg 2820 agcgcgctgc agaagcccat gctgcacctg cacacgcagt tcggggtcga aatcccatgg 2880 gacaccatcg acatggattt catgaacctc aaccaggccg cacacggcga ccgcgagttc 2940 gggtacatcc agacccggct ttcggtgccg cgcaccaccg tcgccgggca cgtcggcgac 3000 ccgcgcacca cggcacgcat cggatcgtgg atgcgcgcgg cgctcggggc ggccgagttg 3060 cggtcgctgc gcatcgcgcg tttcggcgac aacatgcgtg acgtcgcggt caccgagggc 3120 gacaaggtcg aggccgaatc gcacttcggc gtctcggtca acacctactc ggtgaacgac 3180 ctcgccaagg ccgtgtacga cgtcagcgac cccgagatcg acaagctggt acaggaatac 3240 gaggacacct acgcggtggc cgaggaactg cgccgcggcg gcgaacgcca cgcgtcgctg 3300 cgcgaaggcg cccgcatcga actgggcttg cggcacttcc tggccgacgg cttcggcgcg 3360 ttcaccacca acttcgagga cctcggcgat ctgcgccaac tgcccggcct ggccgtgcag 3420 cggttgatgg ccgacggttt cgggttcggc gccgaaggcg actggaagac ctcggcgatg 3480 gtgcgcacgg tcaagaccat gggtgtgggc ctgcccggtg gcacgtcgtt catggaggac 3540 tacacctacg acctgacacc gggatccgaa cgcatcctgg gcgcgcacat gctggaggtc 3600 tgccccagca tcgcgggcca gacgcccagc ctggaagtcc atccgctggg catcggcaac 3660 cgtgaggacc cggtccgtct gcgcttcacc gcggccccgg gttccggtgt ggtgctcggt 3720 atctgcgaca tgggttcacg gttccggttg gtggccaacc acgtcacggt cgtcgaaccg 3780 tccgcgccgc tgcccaatct gccggtcgcg tgcgcggtgt gggagcccga gccgtcgtgg 3840 tcgacgtcga cggaggcctg gctcatggcg ggcggcccgc accacacggt gctcaccacg 3900 gccgtctcgc cgaccacgct cgacgacttc gccaccatca ccggcaccga gctgctgcag 3960 atcgaccagc acaccacccc gcgtgagttc cagcgcgaga tgcgctggaa cgcggtctac 4020 caccacatcg ccgccggcct ctaggtctct gtaggtcacc cagcaccgcg aggtcaccca 4080 // |
|