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EBI DbfetchID AB030826; SV 1; linear; genomic DNA; STD; PRO; 6744 BP. XX AC AB030826; XX DT 11-AUG-1999 (Rel. 60, Created) DT 14-APR-2005 (Rel. 83, Last updated, Version 5) XX DE Pseudomonas aeruginosa genomic DNA, partial sequence, strain:PML14. XX KW . XX OS Pseudomonas aeruginosa OC Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; OC Pseudomonadaceae; Pseudomonas. XX RN [1] RP 1-6744 RA Hayashi T., Nakayama K.; RT ; RL Submitted (09-AUG-1999) to the EMBL/GenBank/DDBJ databases. RL Tetsuya Hayashi, Shinshu-university, Department of Bacteriology; Asahi RL 3-1-1, Matsumoto, Nagano 390-8621, Japan RL (E-mail:thayash@gipac.shinshu-u.ac.jp, Tel:81-263-37-2615, RL Fax:81-263-37-2616) XX RN [2] RX DOI; 10.1046/j.1365-2958.2000.02135.x RX PUBMED; 11069649. RA Nakayama K., Takashima K., Ishihara H., Shinomiya T., Kageyama M., RA Kanaya S., Ohnishi M., Murata T., Mori H., Hayashi T.; RT "The R-type pyocin of Pseudomonas aeruginosa is related to P2 phage, and RT the F-type is related to lambda phage"; RL Mol. Microbiol. 38(2):213-231(2000). XX FH Key Location/Qualifiers FH FT source 1..6744 FT /organism="Pseudomonas aeruginosa" FT /strain="PML14" FT /mol_type="genomic DNA" FT /db_xref="taxon:287" FT CDS complement(556..870) FT /transl_table=11 FT /gene="prtN" FT /function="transcriptional activator for pyocin gene FT expression" FT /note="PRF3" FT /note="similar to various phage activator" FT /db_xref="GOA:Q06552" FT /db_xref="InterPro:IPR020518" FT /db_xref="UniProtKB/Swiss-Prot:Q06552" FT /protein_id="BAA83131.1" FT /translation="MQPSIAPSTPIPRQETVELVYRIFGDVLVPLEQVRERWFRNLNKE FT NFSKALACGRIALPVTTLDDSHKAMQFVALDHLAAYVDQRANQAGSARRAQPGADSIAS FT " FT CDS complement(970..1740) FT /transl_table=11 FT /gene="prtR" FT /function="transcriptional repressor for prtN" FT /note="PRF4" FT /db_xref="GOA:Q06553" FT /db_xref="InterPro:IPR001387" FT /db_xref="InterPro:IPR010982" FT /db_xref="InterPro:IPR015927" FT /db_xref="InterPro:IPR019759" FT /db_xref="UniProtKB/Swiss-Prot:Q06553" FT /protein_id="BAA83132.1" FT /translation="MDKSTQIPPDSFAARLKQAMAMRNLKQETLAEAAGVSQNTIHKLT FT SGKAQSTRKLIEIAAALGVSPVWLQTGEGAPAARSAVSVADGSPLVLEPLHPWDSDTPL FT DEDEVELPLYKEVEMSAGAGRTAVREIEGRKLRFSYATLRASGVDPSAAICAQLTGNSM FT EPLIMDGSTIGVDTATTHITDGEIYALEHDGMLRVKFVYRLPGGGIRLRSFNREEYPDE FT EYSPEDMRSRQISMIGWVFWWSTVRHRRGPSLVR" FT CDS 1882..2205 FT /transl_table=11 FT /product="hypothetical protein" FT /note="PRF5" FT /db_xref="UniProtKB/TrEMBL:Q9R3B4" FT /protein_id="BAA83133.1" FT /translation="MGAGTHPVVGDRRCRCRLLGCRGHGKALRHLEGRSAVHADAPSRS FT FILSPTCFRYGGVVQGVIAMSRDTHSPFPRRGTQVAEPAPRICHVPSIRPSGVGHAREA FT FHG" FT CDS 2198..2398 FT /transl_table=11 FT /note="C4-type zinc finger protein (TraR family)" FT /note="PRF6" FT /db_xref="GOA:Q9R2Q7" FT /db_xref="InterPro:IPR000962" FT /db_xref="InterPro:IPR012783" FT /db_xref="InterPro:IPR020458" FT /db_xref="InterPro:IPR020460" FT /db_xref="UniProtKB/TrEMBL:Q9R2Q7" FT /protein_id="BAA83134.1" FT /translation="MADLADHANELVLARLDGLLAARPALAIRESAEDCEDCGEPIPQA FT RRRAAPGCSRCIDCQDRHERR" FT CDS 2446..2805 FT /transl_table=11 FT /product="hypothetical protein" FT /note="PRF7" FT /db_xref="UniProtKB/TrEMBL:Q9S560" FT /protein_id="BAA83135.1" FT /translation="MIKAIDEMLKLWAEEMHAPGSNGGGYAGGNLIAMLIASKGEVVRG FT HRGSRVILDRVAEVDRLVNRLPEELKNVVVEHYLNRDSFPEQKYRHCGCSRNTFYLRLH FT VAHQGIQDGLLRRVA" FT CDS 3264..3611 FT /transl_table=11 FT /gene="hol" FT /product="holin" FT /note="PRF9" FT /db_xref="UniProtKB/TrEMBL:Q9S559" FT /protein_id="BAA83136.1" FT /translation="MGNEPQTLTEMPLWVLILLAALGGVSGEMWRADKAGLGGWALLRR FT LALRSGASIVCGVAVMLLALACGAALLFAAALGSLTAAAGAEIAVGLYERWAARRLGGC FT ELPEEEPHERT" FT CDS 3627..4256 FT /transl_table=11 FT /gene="lys" FT /product="lytic enzyme" FT /note="PRF24" FT /note="similar to HI1415 gene of H. influenzae Rd, gene10 FT of D29 phage, and various chitinases" FT /db_xref="GOA:Q9S558" FT /db_xref="InterPro:IPR000726" FT /db_xref="UniProtKB/TrEMBL:Q9S558" FT /protein_id="BAA83137.1" FT /translation="MKLTEQQLLRIFPNARLVAGVFVAALQRAMDEREIDTPARYAAFL FT AQVGHESSQLTRLVENLNYSAQGLAATWPSRYLGPDGQPNALALRLARNPQAIADNTYA FT TRNGNGDEASGDGWRFRGRGLLQITGRANYRLVGEALGEPLEAEPWRLEQPVPAARSAV FT WWWAGHGLNELADRGEFAAITRRINGGLNGQAERLALWQRARAVLS" FT CDS 4253..4615 FT /transl_table=11 FT /product="hypothetical protein" FT /note="PRF25" FT /db_xref="UniProtKB/TrEMBL:Q9S557" FT /protein_id="BAA83138.1" FT /translation="MSRLALLLPAVLLVLLAGALLGGGLVARHYRPQLEEALGQLTASR FT VASGQLEALLDEQQRALAAVRASAERRAKDAEQALGEARAQAAEQYAAAVRLLQEPDIG FT VDCQAAGAAIDRELGL" FT CDS 4612..4869 FT /transl_table=11 FT /product="hypothetical protein" FT /note="PRF26" FT /db_xref="UniProtKB/TrEMBL:Q9S556" FT /protein_id="BAA83139.1" FT /translation="MTRLLLGLCLLFAGCAASPTTPRPVRVEVPLAVPCRVPDVRPPSW FT ASATLQAGDSLQAKVRALLAERRQRQGYELELQAALRACR" FT CDS 5185..5679 FT /transl_table=11 FT /gene="VF2" FT /note="PRF28" FT /note="similar to V gene of lambda and gene13 of N15 (major FT tail protein)" FT /db_xref="UniProtKB/TrEMBL:Q9R3G3" FT /protein_id="BAA83140.1" FT /translation="MSILTQGTQIYALVPPVSGTGAATVLEIEGVTSFNPGGNPADQIE FT DPCLSDTSRKYKKGLRTPGQATLGINADPRLASHVRLFQLSEKDGETSVKWAIGWSDGI FT DVKPTVSTEGDDFVLPPARTWFTFEGYVSDFPFDFASNTLVATQATIQRSGAGKWTPKS FT A" FT CDS 5691..6038 FT /transl_table=11 FT /product="hypothetical protein" FT /note="PRF29" FT /db_xref="UniProtKB/TrEMBL:Q9R317" FT /protein_id="BAA83141.1" FT /translation="MNLNELRAAGGFIESALVRKEITWTRVPAGRKKAVSDTFQVFVRR FT NSFGAVERLFSAEGDQQSRNARYLAECIRLGETGEESLTYEQAYDLDPALGFLLLQAVG FT EVNRVEDAEKN" FT CDS 6068..6322 FT /transl_table=11 FT /product="hypothetical protein" FT /note="PRF30" FT /db_xref="UniProtKB/TrEMBL:Q9R371" FT /protein_id="BAA83142.1" FT /translation="MLNGVGGSTIAEAKERLSYAEYRAWVAYLNKRGSLHPGHRLELAL FT ARIAALLGHALGADADPDAFRPHMALQPLSLHQAMDQWA" XX SQ Sequence 6744 BP; 1146 A; 2125 C; 2288 G; 1185 T; 0 other; gctggagccg gtcaagcgtg gagtctacgg cggcgcggtc ggctacctgg catggaacgg 60 caacatggac accgccatcg ccatccgcac cgcgatgatc aagaacggtg aactccacgt 120 gcaggccggc ggcggtatcg ttgccgactc ggtgcccgcg ctggagtggg aagaaaccat 180 caacaagcgc cgggcgatgt tccgcgccgt ggcgctggcc gagcagagcg tcgaataaga 240 cggcgcgagg cggaagaaaa gaaggcggat ggcgtttgcg tcatccgcct tttttgtgcc 300 cggctggacc cacgcattgg cttcgcccta cgcggcaccg ctttcgtagg gcgaatatcg 360 cggcgcgata tccgccaggg agcaggacgc cgaacccgcc tcaaggtgaa gtgatcgata 420 tgtccggttg gcggatgacg ccttcggcat tacttgccca cgcagaaggc gctttcgtag 480 gggggacatc accacgcgat atccgccagg cggagcatgg tgtcgctccc tacgatgctg 540 gcaacggcgg gccgctcagg atgcgatgct gtcagcgccc ggctgtgctc gacgggcgct 600 tccggcttgg ttcgcgcgct ggtcgacgta ggcggcgagg tgatcgaggg ccacgaactg 660 catggccttg tgactatcgt cgagggttgt caccggcagg gcgatccgcc cgcatgccag 720 ggccttgctg aagttttcct tgttcaggtt gcgaaaccag cgttcgcgaa cctgctccag 780 cggcaccagg acgtcgccga agatgcggta gaccaattcc acggtttcct ggcgtggaat 840 cggagtgcta ggggcgatgg atggctgcat ggtattccct cctgcggcta cacgtcgttg 900 agggaaatat agctcaggtt gttttcttgt tcaatagctg aagttgtaga gcgggcgagc 960 gccaggcgct caccgcacca gggacgggcc gcgccggtgg cgtacggtgg accaccagaa 1020 gacccaaccg atcatgctga tctggcggct gcgcatgtcc tccggcgagt actcctcgtc 1080 cggatattcc tcgcggttga agctgcgcag gcgaatgccg ccgccgggca ggcgatagac 1140 gaacttcacc cgcagcatgc cgtcatgttc gagggcgtag atctcgccat cggtgatatg 1200 ggtggtggcg gtgtccacgc cgatggtgga gccatccatg atcagcggtt ccatgctgtt 1260 gccggtgagt tgggcgcaga tcgccgccga cggatcgacg cccgaggcac gcagcgtggc 1320 gtaggaaaaa cgcagcttgc gcccctctat ctcgcgcacc gcagtgcgtc cggcgccggc 1380 ggacatctcc acttccttgt acagcggcag ttccacttcg tcttcgtcca gcggtgtgtc 1440 gctgtcccac ggatgcagcg gttccagcac caatgggctg ccatcggcca cggacacggc 1500 actgcgcgcg gctggagcgc cttcgccggt ctgcagccag accggcgaga cgcccagggc 1560 cgccgcgatc tcgatcagct tgcgggtgct ctgggccttg cccgaggtca gcttgtgaat 1620 ggtgttctgc gaaacccctg ccgcttcggc gagggtttcc tgcttcaggt tgcgcatcgc 1680 catggcctgc ttgaggcgag cggcgaagct gtcgggcggg atctgggtgc tcttgtccat 1740 gctcggcaat ctacagaccg atggattttc tgtaaagagc ctaggtgttg acgataaata 1800 gctttggttg taatttctct tccgtcagaa agcggaaggg gtgatttcca caacttccca 1860 cccgcctttc agagatttca catgggtgca gggacgcacc cggttgtcgg cgaccgacga 1920 tgcaggtgcc gactgcttgg gtgccggggc catgggaaag cgctccggca cctggagggc 1980 cggagcgccg tccatgcaga cgctccgtcc cgctcattca ttctgtcgcc gacctgcttc 2040 aggtacggcg gcgtcgtaca gggagtcatt gccatgtcgc gagatacgca ctcgccattt 2100 ccgcgcagag gaacgcaggt cgccgaaccg gcgccgcgca tctgtcatgt tccatccatt 2160 cggccgtcgg gcgtcgggca cgccagggag gctttccatg gctgaccttg ccgatcacgc 2220 caacgaactg gtcctggctc gcctcgacgg cctcctggcg gcgcgcccgg cgctggccat 2280 ccgcgagtcc gcggaagact gcgaggactg cggcgagccc attccccagg cgcgccgccg 2340 ggcggcaccg ggctgcagtc gctgcatcga ctgccaggac cgccacgagc gccgttgaac 2400 cgacctcatg ccgagccctc gcgggcagtg aaaggagaca cgaccgtgat caaagccatc 2460 gatgaaatgc tcaagctctg ggccgaggaa atgcacgcgc caggcagcaa cggaggcggc 2520 tacgccggcg gcaacctgat cgccatgctg atcgccagca agggcgaggt ggtccgcggc 2580 caccgtggca gccgggtgat cctcgaccgt gtggcggagg tcgatcgcct ggtaaatcgc 2640 ctacccgagg aactgaagaa cgtggtggtg gagcactatc tcaatcgcga cagcttcccc 2700 gagcagaagt accgccactg cggttgcagc cgcaacacct tctatctgcg cctgcatgtg 2760 gcgcaccagg gtatccagga cggcctgctg cggcgggtgg cctgagttcc tggaccggat 2820 accgtgtccc ccctggaatt ttccaaccgg ccttcgagcc ggttttttta tgcctgtcgc 2880 ccatggaggc ggtgagtccc atgcagagca gcggaccctg cacggtagag gcggattcgg 2940 gctggcgtag ccatcctttt cgtcagtcga tgccgggctt tccacatcgg aagtgggtat 3000 gcgcttgccc ggatgcctgg tgaaggttcc cagggcggta tatcaccctc atatcgtggt 3060 gcgtctccct cctattgcag tggattgtcg agaaggcatt gccgggctgg gaatcgggcg 3120 gtaaaaagta gtcattcttg taaaggtgcg tccccaggga ggcactcgtg aagcaccgga 3180 acccggccct ggcgccgggt tttttattgc ccgggaaaac gttcgtgcgg acgtgcccgg 3240 cgctgcctgc caaggaggga cccatgggca acgaaccgca gacactgacg gaaatgccgc 3300 tctgggtact gatcctgctc gccgcgctgg gcggcgtcag cggcgagatg tggcgtgccg 3360 acaaggccgg tctcggcggc tgggccttgt tgcggcgcct ggcgctgcgc tccggcgcgt 3420 cgattgtctg cggcgtggcg gtgatgctgc tggcgttggc ttgcggcgcc gcgctgctgt 3480 tcgccgcggc gctgggcagc ctgaccgccg cggccggcgc ggagatcgcc gtcggtctct 3540 acgaacgctg ggccgcccgg cgcctggggg gttgcgagct gcccgaggag gagccgcatg 3600 agcggacata agcgccagga ggatcgatga aactgaccga gcagcaattg ctgcgcattt 3660 ttcccaacgc ccgcctcgtc gcgggcgttt tcgttgcggc gttgcaacgg gccatggacg 3720 agagggagat cgacacaccg gcgcggtatg ccgcgtttct cgcccaggtc ggccacgaaa 3780 gcagccagtt gacccggctg gtggagaacc tcaattacag cgcccaaggc ttggcggcga 3840 cctggccgag ccgctatctc ggccccgacg ggcagcccaa cgcgttggcc ttgcggctgg 3900 cgcgcaatcc gcaggcgatt gccgacaaca cctacgccac gcgcaacggc aatggcgacg 3960 aagcgtccgg cgatggctgg cgcttccgtg ggcgtggctt gctacagatc accgggcgtg 4020 ccaactaccg gttggtcggc gaggccctcg gcgagccgct ggaagccgag ccctggcgcc 4080 tggagcagcc cgtgccggcg gcccgcagcg ccgtctggtg gtgggccggt cacgggctca 4140 acgagctggc cgaccgcggc gagttcgctg ccatcacccg ccgcatcaac ggcggcctga 4200 atggccaggc ggagcgcctg gcattgtggc agcgggccag ggcggtgctg tcatgagccg 4260 gctcgctctg ctcctgccgg ccgtgttgct ggtcctgctg gccggcgcct tgctcggcgg 4320 cggcctggtt gcccgccact atcgtccgca actggaggag gctctgggcc aactcactgc 4380 cagccgcgtc gccagcggcc agctcgaggc tttgctcgat gagcagcagc gagcgctggc 4440 ggcggtgcgg gcgagcgccg agaggcgcgc gaaggacgcc gagcaggcac tcggcgaggc 4500 cagggcgcag gccgcggagc agtacgccgc ggccgtgcgt ctgctccagg aacccgacat 4560 tggcgtggac tgccaggcgg caggtgcggc gatcgaccgg gagctgggac tatgactcgt 4620 ctcctgctgg ggctttgtct gcttttcgcg ggctgcgcag cctcgccgac gacacctcgc 4680 cccgtgcgcg tcgaggttcc cctggcagtg ccttgccgtg tacctgacgt gcgcccgccg 4740 agctgggcca gcgccacgtt gcaggctggc gattcgctgc aggccaaggt tcgcgcattg 4800 ctcgccgagc gccgccagcg gcagggctac gaactcgaat tgcaggcggc gttgcgtgcc 4860 tgccgctgag acactgggcg catatggacg tcgatggacg tgtgtccggc gcatattgcc 4920 gtgtattgat tccgtagcgt tgtcgagccg ggaatcggcc ggtacaacgt agtcatgctt 4980 gtacaggtgt gtccccccag ggatgccacc tgcaacctca gagcccggcc cgtgtgccgg 5040 gctttctcgt ttgcatccga caacggctcg ggacgtggag gctcctcgcc gaccgcgtac 5100 cgcgccacgg ccgaccgtcc tggggacggg gccagacgac ccgcctggtg cgggtctttt 5160 catgtgcata aaggagagtt ttccatgtcc atcctgactc aaggtaccca gatctacgcc 5220 ctggttccgc cggtatccgg taccggtgcc gctaccgtcc tggagatcga aggcgtgact 5280 tcgttcaacc cgggcggcaa tccggccgac cagatcgaag acccgtgcct gagcgacact 5340 tcgcgcaagt acaagaaagg cctgcgcacc cctggccagg cgaccctcgg catcaacgcc 5400 gatccacgct tggccagtca cgttcggttg ttccaactgt ccgagaaaga tggcgagacg 5460 agcgtcaagt gggccatcgg ctggtccgac ggaatcgacg taaagccgac cgtcagcacc 5520 gaaggcgacg atttcgtgct gccgccggcg cgcacctggt tcaccttcga aggctacgtc 5580 agcgacttcc ccttcgattt cgccagcaac acgctggtcg ctacccaggc caccatccag 5640 cgttccggcg ccggcaagtg gacgccgaag tcggcttgag gagcgcgtag atgaatctca 5700 acgaacttcg tgcggcgggc ggtttcatcg agtcggcgct ggtgcgcaag gagattacct 5760 ggacccgcgt tcccgccggc aggaagaagg cggtcagcga caccttccag gtgttcgtcc 5820 gacgcaacag ttttggcgcg gtggagcgcc tgttctccgc cgaaggcgac cagcagagcc 5880 gcaacgcgcg ctacctcgcc gaatgcattc gcctgggcga gacgggagag gaaagcctga 5940 cctacgaaca ggcctacgac ctcgacccgg cgctgggctt cctgctgctg caggcggtcg 6000 gtgaggtcaa ccgggtcgag gacgcggaaa aaaactgacc cccgccgacg aggtttggca 6060 cgaactggtg ctgaacggcg tcggcgggtc gaccattgcc gaggccaagg agcggctcag 6120 ctacgccgag taccgcgcct gggtcgccta tctgaacaag cgcggctcgc tccatccggg 6180 acaccggctg gagcttgcgc tggctcggat cgctgcgttg ctcgggcatg cgctgggagc 6240 ggacgccgat cccgacgcgt tccgtccgca tatggctctc cagccccttt cgctgcacca 6300 ggcgatggat caatgggcat gacaggccac cccgctgcgg cggggtcttt ttctggaaga 6360 catgaatcat ggccacgaat accgacggca gcctgacgct cgacctggtc cttcgcagcg 6420 aagggtacag ggccgggatg gacaaggttg gcaggatcaa cgatcagaaa atgcgcgcca 6480 tggaggcgcg cgcggaaaag gctggcaagg ctatcggcaa aagcctggac agttcggcac 6540 tgattgccag cagcgtgctg gaccaggcgc tggacatgct gggcaggacc agtcgccagg 6600 cgggtcaggc caagaagcct gtgcagagcg cccaggacaa ggtactggcc gagtggaaga 6660 cccggcagaa ggagctgggc gaagcctgga agagctatcg cgaaccactc caggatctgt 6720 ccaagctcaa cgaagcacta ctga 6744 // |
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