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EBI DbfetchID AB024743; SV 1; linear; genomic DNA; STD; PRO; 4890 BP. XX AC AB024743; XX DT 04-JUL-1999 (Rel. 60, Created) DT 14-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Clostridium stercorarium ORF2 gene, xynC gene for xylanase C, complete cds. XX KW xylanase C. XX OS Clostridium stercorarium OC Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; OC Clostridium. XX RN [1] RP 1-4890 RA Sakka K.; RT ; RL Submitted (10-MAR-1999) to the EMBL/GenBank/DDBJ databases. RL Kazuo Sakka, Mie University, Faculty of Bioresources; 1515 Kamihamacho, RL Tsu, Mie 514-8507, Japan (E-mail:sakka@bio.mie-u.ac.jp, Tel:81-59-231-9621, RL Fax:81-59-231-9684) XX RN [2] RX DOI; 10.1271/bbb.63.1596 RX PUBMED; 10540748. RA Ali M.K., Fukumura M., Sakano K., Karita S., Kimura T., Sakka K., RA Ohmiya K.; RT "Cloning, sequencing, and expression of the gene encoding the Clostridium RT stercorarium xylanase C in Escherichia coli"; RL Biosci. Biotechnol. Biochem. 63(9):1596-1604(1999). XX FH Key Location/Qualifiers FH FT source 1..4890 FT /organism="Clostridium stercorarium" FT /mol_type="genomic DNA" FT /db_xref="taxon:1510" FT -35_signal 181..186 FT -10_signal 204..209 FT CDS 303..1067 FT /codon_start=1 FT /transl_table=11 FT /gene="ORF2" FT /db_xref="GOA:Q9XDV6" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q9XDV6" FT /protein_id="BAA82142.1" FT /translation="MAEKITLYNYYVVFNMDTIYNAFYISVTKTIVIVVTNLFFTSMLA FT YTISRKEYIFRKFITTVFVLTMYFNAGLIPNYLLIKKLGLLNTFSVYWIPNIVSAFNLI FT VMRTYIKTIPESLIESAKIDGAREFHIYWRIVLPLITPCLATIALFVAVGSWNSWFDTF FT LYNSARQDLSTLQYELQKLLSSTMTAGTRGAPAGINEAGRAGTSGTGSGNVTTPQSIRA FT AITIFTSVPILLVYPFLQRYFIHGLAIGSVKE" FT -35_signal 1088..1093 FT -10_signal 1113..1118 FT CDS 1184..4279 FT /codon_start=1 FT /transl_table=11 FT /gene="xynC" FT /product="xylanase C" FT /EC_number="3.2.1.8" FT /note="XynC" FT /db_xref="GOA:Q9XDV5" FT /db_xref="HSSP:1I8A" FT /db_xref="InterPro:IPR013781" FT /db_xref="UniProtKB/TrEMBL:Q9XDV5" FT /protein_id="BAA82143.1" FT /translation="MNGRNGGKRPIASLLVLTLAFLFIPVTKAETTVYHETFAEGKGAA FT VQSGGATITHVTGKFFDGNGDGAALYISNRVNNWDAADFRFSDIGLQDGRIYKITVKGY FT VDPDVHVPEGSQIWLQTVNSYGWWGSTDIKAGEAFTLTGVYKVDTTNDYALRIQSNDTG FT AFVPFYIGEILITEETVPQDDSRNGNKTHAEKFTPITFEDQTTGGFTGRAGTEILTVTD FT EANHTDGGRYSLKVGGRNDTWHGPALRVEKYVDQGYEYKVAVYVRLISPESAQLQLSTQ FT IGEGTSASYVNLAKKNVAISDGWVLLEGTYRYDNLGGGYLTIYVESPDSPEASFYIDDI FT NFEPTGMKSEEIEKGLKSLKDVYKDNFLTGTAISLRDLEGVRFELLKKHFNAVTAENAM FT KPSELQREKGNFTFDGADRLVNAAISAGMKVHGHTLVWHQQTPAWMNIKLDSGGNIVYL FT SREEALGNMRNHIRTVIEHFGDKVISWDVVNEAMSDNPSNPSDWRGSLRKSPWYYAIGE FT DYVEQAFLAAREVLDEHPEWDIKLYYNDYNLDNQNKALAVYNMVRELNEKYQKTHPGKL FT LIDGIGMQGHYSVNTNPKNVELSLKRFTELGVEVSISELDIRAGSNYQLTEKEANAQAY FT LYAQLFKIFREYSDSIARVTFWGMDDGTSWRAEESPLLFDRTLKAKPAYYAVADPDEFI FT EKYKPETIEANRAYAVYGTPEIDGKTDEVWNKAPELKINRYQTAWHGADGTARVLYDEN FT NLYVLIKVNDTQLDKGSPNPWEQDSVEIFIDENNAKTSFYEGDDGQYRVNFENETSFNP FT ESIAGGFESAAEVSGQLYLGSENTVQDREPVSNMQIGFDVQINDGKNGVRQSIATWNDP FT TGNAWQDTSVFGILTLKSKNPVTRGEAIVKIMKAYDMEPLENWNDNSPDASGSYAGYYA FT RAKETGFVSGIGDNKIGAEIPLTREMFFTMIYNIERITGKMQGIDISDAELTLFSDYND FT LSEWAEEAVKALVKSGRIKINGDLLPKALMDAEEVEAFLRLR" XX SQ Sequence 4890 BP; 1491 A; 956 C; 1225 G; 1218 T; 0 other; gaattcagat ggggaattat tccctcgcaa ctgccgcagt tttcaaaaca tttgtgagta 60 taattcttat ttccatagct aacttcatag ccgatcgcct tgggaagaga aactgatata 120 ggagcgggta acatagggtg tgaaaaaaag gaataaaagt taatatagaa gaatattatc 180 tttacaacgt taaatactac ctatttaatt tttctttgtg tcgtaatgat atatcctatg 240 ttgaataccc tggcggtatc cttcaacgag ccgcttgata ccgtccgcgg gggtatttac 300 atatggccga gaaaatcaca ttatacaatt attatgtggt atttaacatg gataccattt 360 acaatgcctt ttatataagc gttacaaaaa caatagtcat agtggttacg aatttgtttt 420 tcacttccat gctggcgtat acgataagca ggaaggagta tattttcaga aaatttataa 480 caactgtttt tgtattaacg atgtatttta atgcagggct cataccgaat tatttgctta 540 ttaaaaagct ggggctgctc aataccttca gtgtgtattg gattcccaac attgtcagtg 600 cttttaatct gatagtcatg cgtacataca taaagaccat acccgagagc ttaattgaat 660 cagccaaaat tgacggagca agagaatttc atatatactg gcggattgtc cttccgttga 720 ttacaccatg cctcgcgaca atagcgctgt ttgttgcggt tggttcatgg aactcgtggt 780 ttgatacatt tctgtataat tcagcaaggc aggatttatc aactttgcag tatgagctgc 840 agaagctgct gtccagcaca atgaccgccg gtacgcgcgg agccccggca ggtataaacg 900 aagcaggaag ggcgggaact tcgggaactg gctcgggaaa tgttaccacc cctcagtcca 960 tccgcgccgc aatcacaatt ttcacatcag tgccgatact gttggtttat ccgttcctcc 1020 aaagatactt tatacacggc cttgccatag gaagcgtaaa agaatgatgc tttatataaa 1080 ttagcatttt acatcatatg tttgggaaca ggtacaatat aaccggtgta tggtccggct 1140 taccataaac accggaaaac tataaaaacg gaggtgagtt tgcatgaatg gccgtaatgg 1200 gggtaaaaga cctatagcga gcctgcttgt gctcacactt gcatttttat tcattccggt 1260 aacgaaggca gaaacaacgg tttatcatga gacttttgcc gaaggaaagg gagcggcggt 1320 acagtcaggc ggggcgacca ttacgcacgt taccggaaaa ttttttgacg gcaacgggga 1380 cggagcggca ctgtacatat ccaacagagt gaacaactgg gacgctgcag atttcagatt 1440 cagcgacata ggtcttcagg acggaagaat ttataaaata acggtaaagg gatatgtgga 1500 tcccgatgtt catgtaccgg agggttccca gatatggctt cagaccgtta acagctatgg 1560 gtggtggggc agtaccgaca taaaggccgg tgaagccttt actctgacgg gcgtatataa 1620 ggtggataca accaatgatt atgctctgag gattcagtcc aatgacaccg gagcatttgt 1680 tccgttttat atcggtgaaa tattgatcac cgaagaaacg gttcctcagg atgacagccg 1740 aaatgggaat aaaactcatg ctgagaagtt cacacccata acctttgagg accaaaccac 1800 aggcggattt acaggcaggg caggaaccga aattcttacg gtaaccgatg aggcaaacca 1860 taccgatggc ggaagatatt cgcttaaagt cgggggaagg aacgacacat ggcatggccc 1920 ggcgttgcgt gtggaaaaat acgtggatca gggttacgaa tataaagtgg cggtttatgt 1980 caggctgatt tcacctgaaa gtgcacaact gcaactgtca acgcaaattg gtgaaggcac 2040 atcggcaagt tacgtaaacc ttgcgaaaaa gaatgttgca atcagtgacg gctgggttct 2100 gctggaaggt acataccgct acgacaatct tggcggaggg tacctgacaa tatatgtgga 2160 gagccctgac agccctgagg catcatttta tattgacgac atcaactttg aacccacggg 2220 catgaaatct gaagagattg aaaaaggttt aaaatccttg aaggatgtgt ataaggataa 2280 ttttctcacc ggcacggcga tatcattgcg tgacctggaa ggtgtaaggt ttgagcttct 2340 gaaaaaacat ttcaatgcgg taactgcgga aaatgcaatg aagccttccg aattgcagcg 2400 tgagaaggga aattttacct ttgacggggc agacaggctt gtaaacgccg caataagtgc 2460 aggaatgaaa gtacacgggc atacgctggt atggcaccag cagacccccg cgtggatgaa 2520 tattaagttg gatagcggag gaaatattgt atacctcagc agggaagaag cgcttggaaa 2580 tatgagaaat catataagaa ccgttattga gcattttggc gacaaggtta tatcgtggga 2640 tgttgtaaac gaagcaatga gcgacaatcc ttccaatcct tccgactgga gaggatcact 2700 gcgtaaatcg ccttggtatt atgccattgg cgaagactac gtggaacagg ctttccttgc 2760 cgcgagagag gtgctggatg aacaccccga atgggatatt aagctttact acaacgatta 2820 caaccttgat aaccagaaca aagctttggc tgtttacaac atggtaagag aacttaacga 2880 aaaataccag aaaactcatc cgggaaaact ccttatcgac ggtataggca tgcagggaca 2940 ttattctgta aatacaaatc cgaagaatgt tgaactgtca ctgaagcggt ttaccgaact 3000 gggtgtggag gtcagcataa gcgaactgga tatccgtgcg ggcagcaatt atcagctcac 3060 cgagaaagag gcgaatgccc aggcctacct ttacgctcag ttgttcaaaa ttttccgtga 3120 atattccgac agtattgcac gggttacgtt ctggggaatg gatgacggta caagctggag 3180 ggcggaagaa agcccgctgc tgtttgacag gaccctaaaa gccaaacctg cgtattacgc 3240 tgttgcagat ccggacgaat tcattgagaa atataagcct gaaacaatag aagccaaccg 3300 ggcatatgcg gtttacggca cacctgaaat tgacggaaaa accgatgaag tttggaacaa 3360 ggcacctgag ctgaaaatta acaggtacca gaccgcttgg catggcgccg acggcaccgc 3420 aagggttctt tacgacgaaa acaacctgta cgttctgatc aaggttaatg acacacagct 3480 tgataaagga agcccaaatc catgggagca ggattcggtt gaaatattta tagacgaaaa 3540 taatgcaaaa acatcatttt atgagggaga cgacggccag tacagggtta actttgaaaa 3600 cgagacatcc tttaatccgg aaagtatagc cggcggtttt gaatcggccg cggaagtttc 3660 gggacaacta taccttggaa gtgaaaatac cgttcaggac cgtgaacccg tcagcaatat 3720 gcaaatcgga tttgacgtgc agattaacga cggaaaaaac ggagtgcggc agagcattgc 3780 aacatggaat gacccgactg gaaatgcatg gcaggatact tcggttttcg gtattcttac 3840 tttgaaatca aaaaatccgg ttacccgcgg tgaagccatt gttaaaatta tgaaggctta 3900 tgatatggaa ccactggaaa actggaacga caattccccc gatgcttcgg gaagctacgc 3960 gggatattac gcgagagcaa aggaaacggg ttttgtcagc ggtatcgggg acaataagat 4020 aggtgctgaa attccgctta cccgggaaat gttttttaca atgatttata atatcgaacg 4080 aataacaggg aaaatgcagg ggatagatat ttcagacgcg gaacttacac ttttcagcga 4140 ttataacgac ttgtcggagt gggccgaaga ggcagttaag gcattggtta aatcaggcag 4200 gatcaaaatt aacggcgatt tattgccgaa ggcgcttatg gacgctgaag aagtggaggc 4260 atttttaaga ttaagataat ttatatacaa gcgtagtaaa aatacacccg gacgggctgc 4320 ttttacagaa gtgatgacag gacctgtccg ggtgttttac cttttatatt tacaaaacta 4380 atctttcctt cagacagcgg gcgcgccttg tgtcgcagtg tgtacagcct aaatcccggt 4440 tgacaattga ttacaaatta atttataatc aatatcaata caataaaggc gatgaaaggg 4500 agtagttacc gttctgtcca cgaaggaaca gtgccgcgac ggagagcgtt tttggggcaa 4560 acagtacggt taaaaaacac cccggagcct gtcgggtgaa aggtattatt tcccgtagtc 4620 cggcacgagt tgtatgcgat aaggacataa acggagctga aacttctcat aagatggaac 4680 cacgggaatg cctctcgtcc cttctttggt ggacagaggt ttttttgttc cgaaaacagg 4740 caggattttt attattaatg ggagtgatgc gaatgttgac aagtgcgccc aaggggacaa 4800 aggatatact gccggacgag atatataaat ggtattatgt tgaggagaaa ttcagagaaa 4860 tggccgaaag gtttggcttc agagagatcc 4890 // |
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