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EBI DbfetchID AB023040; SV 1; linear; genomic DNA; STD; PLN; 6478 BP. XX AC AB023040; XX DT 05-FEB-1999 (Rel. 58, Created) DT 14-APR-2005 (Rel. 83, Last updated, Version 7) XX DE Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMG1. XX KW . XX OS Arabidopsis thaliana (thale cress) OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; OC eurosids II; Brassicales; Brassicaceae; Arabidopsis. XX RN [1] RP 1-6478 RA Nakamura Y.; RT ; RL Submitted (01-FEB-1999) to the EMBL/GenBank/DDBJ databases. RL Yasukazu Nakamura, Kazusa DNA Research Institute, Department of Plant Gene RL Research; 1532-3, Yana, Kisarazu, Chiba 292-0812, Japan RL (E-mail:ynakamu@kazusa.or.jp, Tel:81-438-52-3935, Fax:81-438-52-3934) XX RN [2] RA Kaneko T., Katoh T., Asamizu E., Sato S., Nakamura Y., Kotani H., RA Tabata S.; RT "Structural analysis of Arabidopsis thaliana chromosome 5. XI."; RL Unpublished. XX DR EMBL-CON; BA000015. DR GOA; Q6Y657. DR HSSP; 1JK0; P49723. DR InterPro; IPR000358; Ribonucl_redctse. DR UniProtKB/Swiss-Prot; Q6Y657; RIR2B_ARATH. XX CC Address for correspondence: kaos@kazusa.or.jp CC For the latest information on annotation of this clone, please see CC http://www.kazusa.or.jp/kaos/cgi-bin/agd_graph.cgi?c=MMG1 CC Genes with similarity to proteins in the databases are described CC in 'product' or 'note' qualifiers. Genes that have no significant CC protein similarity are described as 'unknown protein'. CC The software programs used to predict genes include: CC Grail (Informatics Group, Oak Ridge National Laboratory, CC http://compbio.ornl.gov/Grail-1.3/), CC GENSCAN (Chris Burge, MIT, http://CCR-081.mit.edu/GENSCAN.html), CC NetGene2 (S.M. Hebsgaard, et al., CBS, Technical University of CC Denmark, http://www.cbs.dtu.dk/services/NetGene2/) and CC SplicePredictor (Volker Brendel, Stanford University, CC http://gremlin1.zool.iastate.edu/cgi-bin/sp.cgi). CC Genes encoding tRNAs are predicted by tRNAscan-SE CC (Sean Eddy, Washington University School of Medicine, St. Louis, CC http://genome.wustl.edu/eddy/tRNAscan-SE/). CC This sequence may not be the entire insert of this clone. CC It may be shorter because we remove overlaps between CC neighboring submissions. CC The 5' clone is MHK7 and the 3' clone is MEE6. XX FH Key Location/Qualifiers FH FT source 1..6478 FT /organism="Arabidopsis thaliana" FT /chromosome="5" FT /ecotype="Columbia" FT /mol_type="genomic DNA" FT /clone_lib="Mitsui P1" FT /clone="MMG1" FT /db_xref="taxon:3702" FT CDS join(AB011477.1:75125..75591,AB011477.1:75701..75788, FT AB011477.1:75840..76781,AB011477.1:76908..77153, FT AB011477.1:77244..78181,1..487) FT /codon_start=1 FT /product="disease resistance protein-like" FT /note="gene_id:MHK7.15" FT /db_xref="GOA:Q9FGW1" FT /db_xref="InterPro:IPR000767" FT /db_xref="UniProtKB/TrEMBL:Q9FGW1" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="BAB10522.1" FT /translation="MAFSSPSDFKRYHVFSSFHGPDVRSGFLSHLHNHFESKGITPFKD FT QEIERGHTIGPELIQAIRESRVSIVVLSEKYASSGWCLDELVEILKCKEASGHAVMTIF FT YKVDPSSVRKQWGDFGSTFKKTCEGKTEEVKQRWSKALAYIATVAGEHSLNWDNEAEMI FT QKIAIDVSNKLNVTPSRDFEGMCDDVKMIGIWGPAGIGKTTIARALFNQLFTGFRHSCF FT MGNIDVNNYDSKLRLHNMLLSKILNQKDMKIHHLGAIEEWLRNQRVLIVLDDVDDLEQL FT EVLAKESFWFGPGSRVIVTLKDKKILMAHGINDIYHVDYPSQKKALEIFCLSAFKQSSP FT QDGFEELARKVVELCGNLPLALRVVGSSFYGESEDEWRLQLYGIETNLDRKIEHVLRVG FT YDKLLEKHQSLFLHIACFFNHESVDYVSTMLADSTLDVENGLKTLAAKSLVHISTHGLV FT RMHCLLQQLGRQVVVQQSGEPGKRQFLVEAKEIRDVLANETMSKIGEFSIRKRVFEGMH FT NLKFLKFYNGNVSLLEDMKYLPRLRLLHWDSYPRKRLPLTFQPECLVELYLVSSKLEKL FT WGGIQPLTNLKKINLEYSSNLKEIPNLSKATNLETLRLTGCESLMEIPSSISNLHKLEV FT LDASGCSKLHVIPTKINLSSLKMVGMDDCSRLRSFPDISTNIKILSIRGTKIKEFPASI FT VGGLGILLIGSRSLKRLTHVPESVSYLDLSHSDIKMIPDYVIGLPHLQHLTIGNCRKLV FT SIEGHSPSLESIVAYRCISLESMCCSFHRPILKLEFYNCLKLDNESKRRIILHSGHRII FT FLTGNEVPAQFTHQTRGNSITISLSPGGEESFSVSSRFRACLVLSPSKNSPYSDINCFL FT RTKQGVEINSTAKSIYSSPPNRSLSEYLLIFFGDIFPEANRCLMDVTPNEIVFEFSSSS FT AKTMECGVQILAEGGQNCSVVEMGHSETGGNRNHLTDVLKVSQVETIKNSNNTGHWSWL FT LGKKKTELSSTLVSGSSDDTLMRHHEPEAVQLSNDENTRNLSRLLCIVSLVISVLLLFH FT CFFLQMQ" FT CDS join(788..883,975..1047,1229..1398,1500..1547,1846..1899, FT 1968..2090) FT /codon_start=1 FT /product="protein import receptor TOM20, FT mitochondrial-like" FT /note="gene_id:MMG1.2" FT /db_xref="GOA:P82805" FT /db_xref="InterPro:IPR010547" FT /db_xref="UniProtKB/Swiss-Prot:P82805" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="BAB10523.1" FT /translation="MDMQNENERLMVFEHARKVAEATYVKNPLDAENLTRWAGALLELS FT QFQTEPKQMILEAILKLGEALVIDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKAS FT QFFQLAVEEQPESELYRKSLTLASKAPELHTGGTAGPSSNSAKTMKQKKTSEFKYDVFG FT WVILASYVVAWISFANSQTPVSRQ" FT CDS complement(2921..4195) FT /codon_start=1 FT /note="gene_id:MMG1.3" FT /note="unknown protein" FT /db_xref="GOA:Q9FGW0" FT /db_xref="InterPro:IPR000782" FT /db_xref="UniProtKB/Swiss-Prot:Q9FGW0" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="BAB10524.1" FT /translation="MNKKPSKYFPSLNRTDYKNCNFLCNGFSLKPNEKKSSKNASMASK FT LLTTFFLIFFVLDIDLVATSMTSVSSAVEVLSDSGYLSMGLTLKLANQDLNLEDWQELT FT LFAPSDQSFSKFGQPSLLDMKYQLSPTRLPGETLRNLPNGAKIPTLRSNYSLTVTNSSR FT FGGKTSINNVVVQDSPVFDDGYVVIYGSDEFFTSPTKISDDSSSSSSIPSTTSSTGSIP FT IPSSATQTPPSPNIASDSTRNLPNRSKPVNRFNIFESASRLLMSRGFVIIATFLALQLE FT DNTSGNDTKITVFAPIDEAIPNPTTKFSDYVTIFRGHVVSQLLLWKDLQKFAKEGSILQ FT TVLKGYEIEISLSGDILLLNGVPLIYPDLYVNDWIAVHGFNQMIVTKEKQVDVGDSITV FT LNNGEQEEEGVHGEYSSELGDYGLH" FT CDS 4431..5427 FT /pseudo FT /note="contains similarity to ribonucleoside-diphosphate FT reductase" FT /note="gene_id:MMG1.4" FT /inference="non-experimental evidence, no additional FT details recorded" FT CDS complement(join(6238..6478,AB010072.1:1..178)) FT /pseudo FT /note="gene_id:MMG1.5" FT /note="pir||T00530" FT /note="similar to unknown protein" FT /inference="non-experimental evidence, no additional FT details recorded" XX SQ Sequence 6478 BP; 1919 A; 1157 C; 1309 G; 2093 T; 0 other; tctatcagaa tatctgttaa ttttttttgg cgacatattt cctgaagcaa acagatgcct 60 tatggacgtg accccgaacg aaattgtgtt tgaattcagc tcctctagtg ctaagactat 120 ggaatgtggt gtacagatct tggcagaagg aggacagaat tgtagtgtcg tcgaaatggg 180 ccactctgaa actggaggca acagaaacca cctcacagat gttttaaagg tatctcaagt 240 cgaaaccatc aaaaacagta ataatacagg tcactggagt tggcttctag ggaagaagaa 300 gacagagctt agttcgacat tagtctcagg atccagtgat gataccttga tgaggcatca 360 tgagcctgaa gctgttcagc tcagtaatga tgaaaacacc agaaatcttt cgcgtttgct 420 atgtattgtt tcccttgtga tctctgtttt gttacttttc cattgctttt ttcttcaaat 480 gcaatgacct gatgcattac actacagatc ctgttgtggt tagacgtaat agttgttgtt 540 gtattgtttg gtgttttttt tgttgttact agttgttgta tgattgtgtg aaaaaaaaag 600 ggtttagttt tcttagatat tgttgggctg actttagcaa aagcccataa ggccttttaa 660 gcccacttcc cggacgagaa gagcgaaccg acttatatac gaggatttat agctcgtctt 720 ccttaaatta tcgtttgtga cggaagaaga atcaaaacaa ttaatcgcga ggcttgagaa 780 tcaatcaatg gatatgcaga atgaaaacga gagattgatg gtcttcgaac atgctcgcaa 840 agtagcagaa gcaacctacg tcaaaaaccc tttagatgcc gaggttagtc ttttgattta 900 tcgttttttg gataatttac cctaaattcg attacgaatt ttgttattcg aattttgttt 960 ctttgtttct gtagaatttg acgagatggg caggagcttt acttgaacta tcacagtttc 1020 agacagagcc aaagcagatg attctaggtt ctttgttatt tcttctcgtt ttagttttgt 1080 atcgaattca gattaaattc gtttgattga gtctgccttg aaattgaatt attatagact 1140 tagattagtc gtttatgtat gtatgttaag atgtatgttt tgttattgaa atctgtaact 1200 aatacttaaa agatggaatt ttacgtagag gctattttga agctgggaga ggccttggtc 1260 atcgatccaa agaagcatga tgctctttgg ttaattggga atgctcatct ttcatttggg 1320 tttttgagtt ctgatcagac agaagctagc gataactttg agaaagcttc tcagttcttt 1380 caacttgctg tggaggaggt aattagtctc tttctttcgt aatcctgacc taattaatat 1440 gatttgtttt atgtttttgt cttctgtggt gttttgaaat gtgagatgta tttttgcagc 1500 aaccagagag cgaactctat cggaaatcat tgacattggc ttccaaggta catcttcatt 1560 gttaaaattt cctcaaattt ggtcatgttt acttcctgat ttaagaaatt gagatctgct 1620 tagctagttg tcttagcaat aggaactgcg aggtggtttg gtttgatgga tatatatagt 1680 aactcataga cggggaataa tgtatgtgaa ctgaatcata cctttatgcc tagagatgaa 1740 gcttttttag tgtagaataa actcattgtt cagtgaagca atggttatga atctttgatt 1800 tttgttcgtg agacctattc tccttctctc tttgtgaaac tgcaggctcc agaactacat 1860 acaggcggca ccgctggacc atcatctaac agtgcgaagg ttgtttcttt tattcgaaac 1920 tacaatttgg tttgatgaaa atttaacacg tttgttcttt ctcacagacg atgaagcaga 1980 aaaagaccag tgagttcaag tatgatgtgt tcggatgggt catcttagcc agttacgttg 2040 ttgcgtggat cagttttgcc aattctcaga cgccggtgtc aaggcagtaa cgctcaccaa 2100 gagcgtctaa agaccagcac ttttttttta atgcattttg aaacaaaaga gttttctcat 2160 tataacaact cctagaacat atttgaagtt aagaatgaga gagactcaga aaatgtataa 2220 gaactcatat tgtcctttgg aaattaacat acaaattagt gaagacatta tgcctaactc 2280 agtagagtac tcttcataat caccttcttc ttctccccca tcgcttagct ctgacaaaga 2340 ctccctatgt aacctgtttc tcgttgggta ccgtaccatc atttggttaa caaaaatatc 2400 agttttcttt tccttgtact atatttgtcc atgatcaggt tctagctttg aagattaaca 2460 tttcatctta ttctagcgat agtaacttct aggtggttcg aatttatcta ctcatacaag 2520 gagaatagtg catctgaatc atgttctgcc tatagatgaa gtttttagtc tagaaaaaca 2580 cagtatatag tgaagcaatg gttatgactt atgagtgcag gctccaatac tacatacaga 2640 ggttcacgaa catggtttac gtccacaaat acgagcaacc tcacaggcta tgaagaacaa 2700 cactgattcc aggtactaac taccatcaac ctcagagacc aatatcgagc cagtaacatt 2760 caccaagaga gtctaaattc acaactttat attcattttc aaactaaaga ggttctcatt 2820 gttaacaact ctgaacagat tcgagattat gaaataagag aatcaacact gatatgagta 2880 tctctctaca ttgctgttga atcaaattgt cttgtagaaa tcagtgaaga ccatagtcac 2940 ctaactcaga agagtactct ccatgaacac cttcttcttc ttgttctcca ttgtttagca 3000 ctgtgataga atctcccaca tccacctgtt tctcttttgt tacaatcatc tgattaaagc 3060 catgaacagc aatccaatcg ttgacataca aatctggata tatgagtgga actccattga 3120 gaagaagtat atcaccggac aaagaaatct caatctcata ccctttaaga acagtctgca 3180 gaatcgatcc ttccttagca aatttctgaa gatctttcca taagagaagt tgactgacaa 3240 catgtcctct gaaaatagta acgtaatcgg agaatttagt agttggattt ggaattgctt 3300 cgtcgatcgg agcaaagact gtgatcttcg tgtcgtttcc tgaagtatta tcttctaatt 3360 gcagagcgag aaacgtagct ataatcacga aacctctcga cattaacaat cttgaagccg 3420 attcaaagat gttgaagcga ttcactggtt tagatctatt gggaagattt cgagtggaat 3480 ccgaagcgat attaggactt ggaggtgttt gagtcgctga gctagggata gggattgaac 3540 cagtagatga agtagtgctt gggattgaag aagaagatga tgaatcgtcg gagattttcg 3600 tcggtgatgt gaaaaactcg tcggatccgt aaatcacgac gtatccgtcg tcaaaaacag 3660 gagaatcttg gactacgacg ttgttgatcg aagttttacc tccgaatcgt gaagaattcg 3720 tgacggttag agagtaatta gatctgagag tagggatttt ggcgccattt gggaggtttc 3780 ttaaggtttc tcctgggagt ctcgtcggag agagctggta cttcatatcg agaagcgaag 3840 gttgaccaaa cttagagaaa gattgatcag aaggtgcgaa gagggtgagt tcttgccaat 3900 cttcgaggtt tagatcttga ttcgcgagct ttagtgtgag tcccatggat aagtagccgg 3960 aatcggaaag aacttccacg gcggatgaaa cagatgtcat agaagttgcg acgagatcga 4020 tatcgagaac gaaaaatatg aggaagaagg tcgttagaag cttcgacgcc attgatgcgt 4080 tcttcgagct ttttttttcg tttggtttca gagaaaagcc gttgcagagg aagttacagt 4140 ttttatagtc cgtcctatta agagagggaa aatatttact gggcttttta ttcataggcc 4200 catgtgtttt tttgtcaaca ggcccatatg tttttttctt ttttagtttt cagtttttca 4260 cattttccct cccgcttctt tttcttattt ccctctctaa aaacaagaaa acatttttac 4320 attttccctc ctaaatctcc aaattttcag aataaatatc tcaattacaa atccatgata 4380 atccacacaa caataaacac tcatcgatta aatcttcttc accggaaaaa atgccttcga 4440 tgccagagga accaatccta acaccaacac cagatcgatt ctgtatgttc ccaatccaat 4500 acccacagat ttgggagatg tacaagaaag ccgaagcatc cttctggaca gccgaagaag 4560 tcgatctctc tcaagacaat cgcgactggg aaaactcact aaccaacgac gaacgtcact 4620 tcattaaaca cgtcctcgcc ttcttcgccg catcagacgg aatcgttctc gagaatctct 4680 caactagatt catgtccgat gttcagatct cagaagctcg tgccttctac ggattccaaa 4740 tcgcgattga gaatattcac tccgagatgt atagtctcct tctcgacacg tatatcaaag 4800 acaacaaaga gagagatcat ctttttcgtg caatcgaaac cattccttgt gacgaaaaaa 4860 gcagaatggg ctatgaaatg gatcaacgga tctcaaagct tcgctgagag aatcgtagcg 4920 tttgcttgcg ttgaaggtat attcttctcc ggtagctttt gttcgatatt ctggttgaag 4980 aaacgaggtt taatgcctgg actcactttt tcaaacgaat tgatttcgag agacgaaggt 5040 cttcactgtg atttcgcttg tttgatatat agtcttctta gaactaagtt tgatgaagat 5100 cgtttgaaag cgattgtttg tgatgctgtt gagattgaga gagagtttgt ttgtgacgcg 5160 ctttcttgtg ccttggttgg gatgaatcgt gagttgatga gtcagtacat tgagttcgtt 5220 gctgataggt tgttggctgc gcttgggtgt ggtaaggtgt atggtgtgac taatcctttt 5280 gattggatgg aattgatttc gcttcagggt aagaccaact tttttgagaa gagagttggt 5340 gagtatcaga aagcttctgt tatgtctagt gttcatggaa acgctgcgtt taatgatgat 5400 catgtcttca agcttgacga ggatttttag attttgctta cttgctttat ttttagtttt 5460 gtaattttca gtataatgaa aaacagatga agtttaattt gataatggac atttaatttc 5520 ttaattattt aacatagttt ttacatggtt aacatataac taatccggat cctagtaatt 5580 acatgggtct acccaaatcc aaaaaggatt ggagccaatg actttgctat atatttcgtt 5640 cttaagaaca ttgctaggtt tctagctata ttggttttgc ctctttattg gcagagggag 5700 cacaaagaga atcctcccct ttcgacataa aaatgttatt ttctcatggt cttttggatg 5760 attagcaaga cttactctta agtttttgca taagtatctt acatcacttt ctaactcaac 5820 cttcgaaata tgcatttgtt tcaaacaatc cagtgttcat ttccaagtag gtgtagtgac 5880 ttatgataag aaagcatgtc gattatggta aaaatatttt agtggctgtt cacaataatt 5940 ctatgagaga gaatcattag taggcaaatt gaataggaaa cagacatgat atcaaattct 6000 tttgaaggca gaaagaaatg aaaatataga aaacataact aaaagagaat aaacaaccaa 6060 ttaccattta ccgttccaaa gaccttcatc gtcgaatttc aagaacaatg aaggtctttg 6120 aaagatactt ttgtcaataa atatgaaaac cataaacaat tagtagagat gagagatcac 6180 tataactctc ctatgacttt ccatccaatc aaaaagaaaa gtttgtgtcc atgtctctat 6240 aactctatcc aacttcttta agataagatc attttctcgc ttattacacc aagtatacag 6300 cggaccatgg gatgataggt ctcaaacaaa gcaatagttt accactgatt gaaagtctct 6360 cattccattg gtataatagg gttgtcttca gctctagaat gctccacaag ttctaaaatc 6420 tcattaaaat ctccaaacat tatttaaggc ttgctactaa tgacaggaga gtcatagt 6478 // |
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