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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AB015980; SV 2; linear; genomic DNA; STD; PRO; 1320 BP.
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AC   AB015980;
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DT   10-JUL-1998 (Rel. 56, Created)
DT   14-APR-2005 (Rel. 83, Last updated, Version 3)
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DE   Aeromonas punctata XynX gene for exo-beta-1,4-xylanase, complete cds.
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KW   .
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OS   Aeromonas punctata
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales;
OC   Aeromonadaceae; Aeromonas.
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RN   [1]
RP   1-1320
RA   Suzuki T., Usui K.;
RT   ;
RL   Submitted (03-JUL-1998) to the EMBL/GenBank/DDBJ databases.
RL   Tohru Suzuki, Gifu University, Department of Biotechnology; 1-1 Yanagido,
RL   Gifu, Gifu, 501-1193, Japan (E-mail:suzuki@cc.gifu-u.ac.jp,
RL   Tel:81-58-293-2909, Fax:81-58-293-2909)
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RN   [2]
RX   PUBMED; 16233445.
RA   Usui K., Suzuki T., Akisaka T., Kawai K.;
RT   "A cytoplasmic xylanase (XynX) of Aeromonas caviae ME-1 is released from
RT   the cytoplasm to the periplasm by osmotic downshock";
RL   J. Biosci. Bioeng. 95(5):488-495(2003).
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RN   [3]
RX   DOI; 10.1271/bbb.63.1346
RX   PUBMED; 10500996.
RA   Usui K., Ibata K., Suzuki T., Kawai K.;
RT   "XynX, a possible exo-xylanase of Aeromonas caviae ME-1 that produces
RT   exclusively xylobiose and xylotetraose from xylan";
RL   Biosci. Biotechnol. Biochem. 63(8):1346-1352(1999).
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FH   Key             Location/Qualifiers
FH
FT   source          1..1320
FT                   /organism="Aeromonas punctata"
FT                   /strain="ME-1"
FT                   /mol_type="genomic DNA"
FT                   /note="synonym: Aeromonas caviae"
FT                   /db_xref="taxon:648"
FT   -35_signal      86..91
FT   -10_signal      110..115
FT   RBS             168..172
FT   CDS             181..1182
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /gene="XynX"
FT                   /product="exo-beta-1,4-xylanase"
FT                   /note="This gene encoding a xylanase classified in family
FT                   10 (family F), beta-1,4 endo-xylanase. However, XynX is an
FT                   exo-xylanase because it produces only xylobiose and
FT                   xylotetraose."
FT                   /db_xref="GOA:O83007"
FT                   /db_xref="InterPro:IPR013781"
FT                   /db_xref="UniProtKB/TrEMBL:O83007"
FT                   /protein_id="BAA31551.2"
FT                   /translation="MPTEIPSLHAAYANTFKIGAAVHTRMLQSEGEFIAKHFNSITAEN
FT                   QMKFEEIHPEEDRYSFEAADQIVDFAVAQGIGVRGHTLVWHNQTSKWVFEDTSGAPASR
FT                   ELLLSRLKQHIDTVVGRYKGQIYAWDVVNEAVEDKTDLFMRDTKWLELVGEDYLLQAFS
FT                   MAHEADPNALLFYNDYNETDPVKREKIYNLVRSLLDKGAPVHGIGLQGHWNIHGPSIEE
FT                   IRMAIERYASLDVQLHVTELDMSVFRHEDRRTDLTAPTSEMAELQELRYEEIFNLFREY
FT                   KSSITSVTFWGVADNYTWLDHFPVRGRKNWPFVFDQQLQPKVSFWRIINSMS"
FT   mat_peptide     184..1179
FT                   /note="N-terminal amino acid sequence of mature enzyme,
FT                   determined by peptide sequencer"
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SQ   Sequence 1320 BP; 355 A; 239 C; 350 G; 376 T; 0 other;
     ttccaagaaa tcgttctgtt gcgatgagca gtgggaacaa acgtggaggt gtttttgttt        60
     tgcgcacagg gcccaggatc ataaatagtt aaatataagg gggaagaagt ataatttgtt       120
     cattgtaagc gtattcaaca aacgatatga tgaataaaaa tgggcaggga ggaattgtaa       180
     atgccaaccg agattccatc actacatgct gcgtacgcta atacgttcaa aataggtgct       240
     gctgtacata ccagaatgtt gcagtccgaa ggggaattta tcgccaaaca cttcaatagc       300
     atcacggctg aaaatcagat gaaattcgaa gaaattcacc cggaagagga tcgttattca       360
     tttgaggcgg cggatcaaat tgttgatttt gctgttgccc aagggattgg ggttcgcgga       420
     catactttgg tctggcataa tcaaacatcg aaatgggtct ttgaggatac ctcaggtgct       480
     cccgcttcca gagagctgtt attatctcgc ttgaagcaac atattgatac ggtagtaggt       540
     cggtataagg ggcaaatata tgcgtgggat gttgttaatg aagctgttga agataagacc       600
     gacctgttca tgcgggacac gaagtggtta gagctagtgg gggaagatta tttgctgcaa       660
     gcgttcagta tggctcatga agctgatcca aatgctcttc ttttctataa tgactacaat       720
     gagacggatc cggtcaaacg ggagaagatc tacaatctgg ttcggtcttt gctggacaag       780
     ggagcgcctg tacacgggat tgggttgcag gggcattgga atattcatgg tccttcgatt       840
     gaggagatcc gaatggctat tgagcgttat gcttcactgg atgtacagtt gcatgttacg       900
     gagctggata tgtccgtgtt tcgtcatgag gatcgtcgaa cggacctcac cgcgccaact       960
     tcggagatgg ctgagctaca ggagcttcga tatgaggaaa tcttcaattt gttccgtgag      1020
     tataaatcat ccattacctc tgtgacgttc tggggagtag cggacaatta tacctggctc      1080
     gaccatttcc cggttcgtgg gcgaaaaaat tggccctttg tttttgatca gcagttgcag      1140
     ccaaaggtat cattttggcg tatcattaat tctatgtcct gaatatcagg taagtggaga      1200
     gaatcggtca cgatgtggcc ggttttttgt tgcgctcaat atagattata cagtacggct      1260
     atcccgtgca taattgaaca ctacgcttgt atgtgtgtaa gtatatggtt tttaatggaa      1320
//
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