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EBI DbfetchID AB010958; SV 1; linear; genomic DNA; STD; PRO; 5774 BP. XX AC AB010958; XX DT 09-OCT-1998 (Rel. 57, Created) DT 14-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Clostridium thermocellum xynA and xynB genes for xylanase, complete cds. XX KW xylanase; xynA; xynB. XX OS Clostridium thermocellum OC Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; OC Clostridium. XX RN [1] RP 1-5774 RA Sakka K.; RT ; RL Submitted (05-FEB-1998) to the EMBL/GenBank/DDBJ databases. RL Kazuo Sakka, Mie University, Laboratory of Applied Microbiology; 1515 RL Kamihamacho, Tsu, Mie 514-8507, Japan (E-mail:sakka@bio.mie-u.ac.jp, RL Tel:81-59-231-9621, Fax:81-59-231-9684) XX RN [2] RX DOI; 10.1007/s002530051401 RX PUBMED; 10222584. RA Hayashi H., Takehara M., Hattori T., Kimura T., Karita S., Sakka K., RA Ohmiya K.; RT "Nucleotide sequences of two contiguous and highly homologous xylanase RT genes xynA and xynB and characterization of XynA from Clostridium RT thermocellum"; RL Appl. Microbiol. Biotechnol. 51(3):348-357(1999). XX FH Key Location/Qualifiers FH FT source 1..5774 FT /organism="Clostridium thermocellum" FT /strain="F1" FT /mol_type="genomic DNA" FT /db_xref="taxon:1515" FT CDS 1227..2600 FT /codon_start=1 FT /transl_table=11 FT /gene="xynB" FT /product="xylanase" FT /db_xref="GOA:O87118" FT /db_xref="HSSP:1GMM" FT /db_xref="InterPro:IPR018208" FT /db_xref="UniProtKB/TrEMBL:O87118" FT /protein_id="BAA33542.1" FT /translation="MKQKLLVTFLILITFTVSLTLFPVNVRADVVITSNQTGTGGGYNF FT EYWKDTGNGTMVLKDGGAFSCEWSNINNILFRKGFKYDETKTHDQLGYITVTYSCNYQP FT NGNSYLGVYGWTSNPLVEYYIIESWGTWRPPGATPKGTITVDGGTYEIYETTRVNQPSI FT KGTATFQQYWSVRTSKRTSGTISVTEHFKAWERLGMKMGKMYEVALVVEGYQSSGKADV FT TSMTITVGNAPSTSSPPGPTPEPTPRSAFSKIEAEEYNSLKSSTIQTIGTSDGGSGIGY FT IESGDYLVFNKINFGNGANSFKARVASGADTPTNIQLRLGSPTGTLIGTLTVASTGGWN FT NYEEKSCSITNTTGQHDLYLVFSGPVNIDYFIFDSKGVNPTPTPTSPPQQDQVLGDLNG FT DKQVNSTDYTALKRHLLNITRLSGTALANADVNRDGKVDSTDLMMLHRYLLRIISKLG" FT CDS 2627..4678 FT /codon_start=1 FT /transl_table=11 FT /gene="xynA" FT /product="xylanase" FT /db_xref="GOA:O87119" FT /db_xref="InterPro:IPR018208" FT /db_xref="PDB:2C71" FT /db_xref="UniProtKB/TrEMBL:O87119" FT /protein_id="BAA33543.1" FT /translation="MRQKLLITFLILITFTVSLTLFPVNVRADVVITSNQTGTHGGYNF FT EYWKDTGNGTMVLKDGGAFSCEWSNINNILFRKGFKYDETKTHDQLGYITVTYSCNYQP FT NGNSYLGVYGWTSNPLVEYYIIESWGTWRPPGATPKGTITVDGGTYEIYETTRVNQPSI FT KGTATFQQYWSVRTSKRTSGTISVTEHFKAWERLGMKMGKMYEVALVVEGYQSSGKADV FT TSMTITVGNAPSTSSPPGPTPEPTPRSAFSKIEAEEYNSLKSSTIQTIGTSDGGSGIGY FT IESGDYLVFNKINFGNGANSFKARVASGADTPTNIQLRLGSPTGTLIGTLTVASTGGWN FT NYEEKSCSITNTTGQHDLYLVFSGPVNIDYFIFDSNGVNPTPTSQPQQGQVLGDLNGDK FT QVNSTDYTALKRHLLNITRLSGTALANADLNGDGKVDSTDLMILHRYLLGIISSFPRSN FT PQPSSNPQPSSNPQPTINPNAKLVALTFDDGPDNVLTARVLDKLDKYNVKATFMVVGQR FT VNDSTAAIIRRMVNSGHEIGNHSWSYSGMANMSPDQIRKSIADTNAVIQKYAGTTPKFF FT RPPNLETSPTLFNNVDLVFVGGLTANDWIPSTTAEQRAAAVINGVRDGTIILLHDVQPE FT PHPTPEALDIIIPTLKSRGYEFVTLTELFTLKGVPIDPSVKRMYNSVP" XX SQ Sequence 5774 BP; 1803 A; 1325 C; 1144 G; 1502 T; 0 other; aagcttaaac ttgaagaaaa acctacggtt gaaccaaaag actccttgga agaaaaaccc 60 gtgacaaaac caaaggatga caaaaaggaa aaagcaaaga acagcattga aaaaatgcca 120 taggtaggga tgcaaatatc cttaccccta ttttattatt accggtattt cgcggacaat 180 gtccattctt ctttgttccg catcaacttt gcatacgtag gccatgaggt caacgccggc 240 ttccgcggct attctcagcg cattggcaaa gttcttgtcc gtcctgtcat tgggccttac 300 aacatccgcg tcctctctct gcacaataaa ggcaactcct gcctctttgc cattttgcct 360 tatttttgtc aattcttcaa gatgccgggt accctttggg tgggagcatc ggggaaaaaa 420 ccttgcctgt tttccacaag tgttacccct ttaacttcaa tataatattc tttaccttca 480 gaaaacagtc caaagtcaaa gcggctgttt aacacggtta cttccctgcg tatttcgcta 540 tagtcccgaa atttatcaaa tttcccctgc accagtgctt catgcattat tctgttgggc 600 gcattcgcag aatcaatgga tacccatatc ccgttttttc ttaccaatat gagcccaaaa 660 cgggtcttgc ggtcagtttt gtcatacttt ctgaccatca cagccgcccc gtccaccagg 720 agttctttca atcttcccgt attcggaaca tgggcaaatt cctgtacccc gtcaacttcc 780 acaagagcta caaaccggtt taatcttttg acaaactttg ctttaacaag ttctccttca 840 attctcattt acttctcctt ttaattctct gtttttcagc accgctattt aagtcaaact 900 caaatattac acaagactaa ttacccataa taaacggcaa cataacactt ataatttaaa 960 taaaaacatg taaatatcta ttaattattt taaaagattt tatactatta agcgacttaa 1020 aaaattatat ttttgcgaat agataatatg aaataaacgg gtaggggtgt aaattttttc 1080 tcgctgttat aaaaaatcca taacactgtc aatttacagg cgaagggaaa gtatatataa 1140 aagttatata ttttttcaga attgcttaaa aaaattatta atataaattt atattttata 1200 aaaaaatcta aaaaaggggg agaaaaatga aacaaaaatt actggtaact ttcctgattt 1260 taattacttt taccgtttcg ctgactttgt ttccggtaaa tgtacgcgct gatgtggtaa 1320 ttacgtcaaa ccagacgggt actggcggcg ggtacaactt tgagtactgg aaagacaccg 1380 gaaacggaac catggtcctc aaagacggtg gtgcgttcag ctgcgaatgg agcaatatca 1440 acaatattct tttccgtaaa ggtttcaaat acgatgaaac aaagacacat gatcaacttg 1500 gatacataac ggtaacttat tcctgcaact atcagccaaa cggaaactct tatctgggag 1560 tctacggatg gaccagcaat ccgcttgtag agtattacat catcgagagc tggggaacct 1620 ggagaccacc gggagcaaca ccaaagggca ctattaccgt tgacggtggt acatacgaga 1680 tatacgagac caccagagtt aaccagcctt ccatcaaagg tacagctact ttccagcaat 1740 actggagtgt acgtacatca aaacgtacaa gcggaaccat atccgtaacc gaacacttta 1800 aagcctggga acgtctgggt atgaaaatgg gaaaaatgta tgaggttgct ttggttgtag 1860 aaggatacca gagcagcgga aaagccgacg taaccagcat gacaattact gttggcaacg 1920 caccgtcaac atcatcacca ccgggtccga cacctgaacc gactccaaga agtgcttttt 1980 caaaaatcga agctgaggag tacaactccc tcaagtcatc aaccattcag accataggca 2040 cttccgacgg aggaagcggt ataggttata ttgaaagcgg tgactatctg gtatttaaca 2100 aaataaactt tggaaacggt gcaaactctt tcaaggcaag ggttgcatcc ggtgcggaca 2160 cacccaccaa tatccagtta agactcggaa gcccgaccgg tactcttata ggaactctta 2220 cggtggcttc cacaggcggt tggaacaatt acgaggaaaa atcctgcagc ataaccaaca 2280 ctacaggaca gcacgactta tatctggtat tctcaggtcc tgttaacatt gactacttca 2340 tattcgactc gaaaggtgta aatcctacac ctacacctac ttctccgccg caacaagacc 2400 aggttttggg tgacttgaac ggagacaaac aagtaaattc aacagactat acagcactga 2460 agagacattt gctcaatata accagacttt caggaaccgc tcttgccaat gccgatgtaa 2520 accgcgacgg caaagttgat tccactgacc ttatgatgtt gcacagatac cttcttcgta 2580 taatctccaa acttggatga taatcggctg aagaaaggag agcaaaatga gacaaaaatt 2640 actgataact ttcctgattt taattacttt taccgtttca ctgactttgt ttccggtaaa 2700 tgtacgcgct gatgtagtaa ttacgtcaaa ccagacgggt actcatggcg ggtacaactt 2760 tgagtactgg aaagacaccg gaaacggaac catggtcctc aaagacggtg gtgcgttcag 2820 ctgcgaatgg agcaatatca acaatattct tttccgtaaa ggtttcaaat acgatgaaac 2880 aaagacacat gatcaacttg gatacataac ggtaacttat tcctgcaact atcagccaaa 2940 cggaaactct tatctgggag tctacggatg gaccagcaat ccgcttgtag agtattacat 3000 catcgagagc tggggaacct ggagaccacc gggagcaaca ccaaagggca ctattaccgt 3060 tgacggtggt acatacgaga tatacgagac caccagagtt aaccagcctt ccatcaaagg 3120 tacagctact ttccagcaat actggagtgt acgtacatca aaacgtacaa gcggaaccat 3180 atccgtaacc gaacacttta aagcctggga acgtctgggt atgaaaatgg gaaaaatgta 3240 tgaggttgct ttggttgtag aaggatacca gagcagcgga aaagccgacg taaccagcat 3300 gacaattact gttggcaacg caccgtcaac atcatcacca ccgggtccga cacctgaacc 3360 gactccaaga agtgcttttt caaaaatcga agctgaggag tacaactccc tcaagtcatc 3420 aaccattcag accataggca cttccgacgg aggaagcggt ataggttata ttgaaagcgg 3480 tgactatctg gtatttaaca aaataaactt tggaaacggt gcaaactctt tcaaggcaag 3540 ggttgcatcc ggtgcggaca cacccaccaa tatccagtta agactcggaa gcccgaccgg 3600 tactcttata ggaactctta cggtggcttc cacaggcggt tggaacaatt acgaggaaaa 3660 atcctgcagc ataaccaaca ctacaggaca gcacgactta tatctggtat tctcaggtcc 3720 tgttaacatt gactacttca tattcgactc gaatggcgta aatcctacac ccacctctca 3780 gcctcaacaa ggccaggttt tgggtgactt gaacggagac aaacaagtaa attcaacaga 3840 ctatacagca ctgaagagac atttgctcaa tataaccaga ctttcaggaa ctgctcttgc 3900 caacgccgat ttaaacggtg acggcaaagt tgattccact gaccttatga ttctacacag 3960 atatcttctc ggtataattt catcttttcc acgcagcaat ccacaaccaa gcagcaaccc 4020 tcaaccaagc agcaatccgc agccaacgat taatccaaat gcgaaactgg tggctcttac 4080 ctttgacgac ggtccggaca acgtacttac ggcacgggtt ctcgacaagc ttgataaata 4140 taacgttaag gctacattca tggtagtagg tcagagagtc aatgattcga cggctgccat 4200 catcagaagg atggttaatt caggccatga aataggaaac cactcatgga gttattcagg 4260 catggccaat atgagtccgg atcagataag gaaatccatt gccgatacaa atgcagttat 4320 tcaaaaatat gctggaacaa cacccaagtt cttccgtccg ccgaacctcg aaacaagccc 4380 aacattattc aacaatgttg acttggtgtt tgtcggcggc ttaacggcaa atgactggat 4440 tccatccaca accgccgaac agagggctgc cgcagttata aacggtgtca gagacggtac 4500 aataattctt ttgcatgatg ttcaacctga gccacacccg acaccggaag ctctggatat 4560 aatcatccct acacttaaga gccggggcta tgaatttgtg accttgactg agttgttcac 4620 gttaaagggt gtgccaattg acccatcagt caaaagaatg tataactctg taccgtaaga 4680 caaatcgaat atcaaatcag tacaacaaag ggggataaaa ttactccccc tttttttgct 4740 ttattattgc ccgttattct ctctttttat atattttatc gatattgcga tggatattaa 4800 atttacaacc aacgtaaata ttacagttgc aacgaatgcc gtaacaacgt ttacatatga 4860 tgccgaaggg atactaaaat ctgtcaccaa gcaccattac cccacatgtt acagctacaa 4920 tcagggcaaa aaaggcaagg cgtccttttt ctactccaaa cttgaacata aggggaagat 4980 ttatcgcctg aatgatagtt gcatacagca ataagtatta cgaaaggact tgttccatct 5040 cgaaaggtgt attttttatc agactcatga caatttgtac tgctatcgaa aataaagcta 5100 cagtagcagc agctatatat ccaaggacat atttacttcc caccatgctc tcatccgaat 5160 atggcatcat caacgcaaga ctgttccact ttgagcgttc atcataagcc agagccgtaa 5220 tcggcagcat agccgcatat ccatggcaaa tccggctata gaatatccgg gaatagctgc 5280 aaatataatt atcattatga taaaaatttt tatctgcttt atcagtgtgt agaagtcttt 5340 taagagtaat gccttcattg tttcctgtct cctttcgcca agaataaaat aatatcttcc 5400 aaagtggtat attctgtgtt aaacatgcgc gaaacggcag atttcagaac cagggcttca 5460 acaccatatt tgttgacctt tttgcccttt accgcttctt ttggcaactt ttcaaagtcg 5520 tcctttgaca tccttacaat ggcatattcc tccaacagtt tatccttctc ttcgcagaaa 5580 agcagccttc cgttatggat aaaagcaatg tagtcgcata tcttttcaag atccacagga 5640 cgggtgtggt cgccatgatc gcgtagtcga tagtggctcc aagtagcgaa gcgagcagga 5700 ctgggcggca aagcggtcgg acagtgctcc gagaacgggt gcgcatagaa attgcaacaa 5760 cgcatatagc gcta 5774 // |
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