EBI Dbfetch

ID   AB004557; SV 1; linear; genomic DNA; STD; PRO; 1878 BP.
XX
AC   AB004557;
XX
DT   11-FEB-1998 (Rel. 54, Created)
DT   14-DEC-2007 (Rel. 94, Last updated, Version 6)
XX
DE   Pseudoalteromonas piscicida chiC gene for chitinase C, complete cds.
XX
KW   .
XX
OS   Pseudoalteromonas piscicida
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC   Pseudoalteromonadaceae; Pseudoalteromonas.
XX
RN   [1]
RP   1-1878
RA   Tsujibo H., Orikoshi H., Shiotani K., Hayashi M., Umeda J., Miyamoto K.,
RA   Imada C., Okami Y., Inamori Y.;
RT   ;
RL   Submitted (31-MAY-1997) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Hiroshi Tsujibo Osaka University of Pharmaceutical Sciences,
RL   Department of Microbiology; 4-20-1 Nasahara, Takatsuki, Osaka 569-1094,
RL   Japan
XX
RN   [2]
RX   PUBMED; 9464381.
RA   Tsujibo H., Orikoshi H., Shiotani K., Hayashi M., Umeda J., Miyamoto K.,
RA   Imada C., Okami Y., Inamori Y.;
RT   "Characterization of chitinase C from a marine bacterium, Alteromonas sp.
RT   strain O-7, and its corresponding gene and domain structure";
RL   Appl. Environ. Microbiol. 64(2):472-478(1998).
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1878
FT                   /organism="Pseudoalteromonas piscicida"
FT                   /strain="0-7"
FT                   /mol_type="genomic DNA"
FT                   /note="originally submitted as 'Alteromonas sp. O-7'"
FT                   /db_xref="taxon:43662"
FT   -35_signal      171..176
FT   -10_signal      196..201
FT   RBS             215..218
FT                   /note="putative"
FT   CDS             226..1518
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /gene="chiC"
FT                   /product="chitinase C"
FT                   /EC_number="3.2.1.14"
FT                   /db_xref="GOA:O50590"
FT                   /db_xref="HSSP:1ITX"
FT                   /db_xref="InterPro:IPR001223"
FT                   /db_xref="InterPro:IPR001579"
FT                   /db_xref="InterPro:IPR003610"
FT                   /db_xref="InterPro:IPR011583"
FT                   /db_xref="InterPro:IPR013781"
FT                   /db_xref="InterPro:IPR017853"
FT                   /db_xref="UniProtKB/TrEMBL:O50590"
FT                   /protein_id="BAA24795.1"
FT                   /translation="MKYTNLLIALPLLGAMEVALAVDCSNLTQWQSQQVYTGGDAVTYQ
FT                   SAKYTAKWWTQNQNPAQNSNTYDVWQANGSCDPATPLPLVSVTSPSSNARVLVGSSVSL
FT                   AAAVSHPQNTAIDSVEFYLDGTLVASDNSAPYEVMWQAQGLGNRALTVYATDVSGARGE
FT                   SSAVNFSVVSDEVPPGDPNFKIVGYFPSWQGAVSDIQFDKLTHINYSFLLPHADGTLRP
FT                   LENLSKMTALVNSAHANNVKVGIAIGGWNGGDDSAFETFASSQQGRARFVQEVIAFVEQ
FT                   HNLDGVDMDWEYPDPGDSANNYALLMKELSVELRARGKFLTAAVVALGYTGGGVLESVF
FT                   QDIDFLNLMAYDANNTDHASMQYAKDSIAYWQGRGLSKEKTVLGVPFYARPTWKAYRTL
FT                   LQENPANSCRDSDGSSYYNGIPDDPRKNAVR"
FT   sig_peptide     226..288
FT   mat_peptide     289..1515
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT   misc_feature    289..465
FT                   /note="chitin-binding"
FT   misc_feature    466..705
FT                   /note="fibronectin type-III like"
FT   misc_feature    706..1515
FT                   /note="catalytic"
FT   repeat_region   1523..1537
FT                   /rpt_type=INVERTED
FT                   /note="a putative rho-independent transcription terminator"
XX
SQ   Sequence 1878 BP; 543 A; 390 C; 455 G; 490 T; 0 other;
     aagcttggtt agaaaaatca gcgtatggag attttataaa ctaacataat cacggatgaa        60
     taattggtgt aaagaaaaga agtattttct attttcatta gactaaggtc gtagagagtt       120
     gcgttgtacg aaatttatcc atgctggtag gctagaattg caagttaaca tttatttaaa       180
     ctcggcacga cttgctctag ccgacataca acatggaaaa aggtaatgaa atatacaaat       240
     ttattaattg cacttccgct cttgggcgcg atggaagttg cactagcggt cgactgtagc       300
     aacttaacgc aatggcaatc acagcaggta tatacaggtg gcgacgcagt cacctatcag       360
     tcagctaaat acaccgcgaa atggtggaca caaaaccaaa acccagcgca aaattccaat       420
     acttatgatg tctggcaagc caatggcagt tgtgatcctg caacgccatt gcctttagtt       480
     tcggtcactt ccccaagcag taacgcacga gtgttagtgg gctcatcagt tagcctagcg       540
     gcggcagtaa gccatccgca aaacaccgca atcgatagtg ttgaattcta tctcgatggc       600
     acgcttgtcg cctctgataa cagtgcgcct tatgaggtga tgtggcaagc gcaggggcta       660
     ggtaatcgcg cattaactgt ctatgcaact gacgtatctg gggcacgagg tgaatcgagt       720
     gcggtgaact tcagtgtcgt gtctgacgaa gttcctcctg gcgatcctaa ttttaaaatt       780
     gtcggctatt tcccaagttg gcagggagcc gtgagtgaca ttcagtttga taaactcacc       840
     catattaatt actcattttt actaccccat gcagatggca cactgagacc gcttgaaaat       900
     ttaagcaaaa tgacagcgct agtaaattcg gctcatgcta acaatgtaaa agtggggatt       960
     gccattggtg gttggaacgg gggggacgat agtgcattcg agacattcgc cagttcacag      1020
     caaggcagag cccgtttcgt gcaagaggtc attgcgtttg tagagcagca taatcttgat      1080
     ggtgttgata tggattggga atatccagat cctggtgatt cggcaaataa ctatgcatta      1140
     ctgatgaagg aactaagcgt tgagttacgc gccagaggta aattcttgac ggcagctgtg      1200
     gtggcgcttg gctataccgg tggtggcgtg ttggaatctg tattccaaga tatcgacttt      1260
     ttaaatttaa tggcatacga cgcgaacaat actgatcatg cttctatgca atacgccaaa      1320
     gactcaatag cttactggca aggtcgtggg ctcagtaaag aaaaaacggt attaggcgta      1380
     ccattttatg caagacctac ttggaaagcg tatcgcacct tactacaaga gaaccctgcc      1440
     aattcctgtc gcgatagtga tggtagcagc tactacaatg gtatccccga cgatccgcgc      1500
     aaaaacgcag tacgctaagc tcaatgccgg tggcattatg aattgggagc tatcccatga      1560
     cagtaatggc cctgcgtcgc tattaacggc gaaatgggaa gttgctaatg gtgtaacacc      1620
     aagctatcaa tgtcagtaaa ttattactta acctgaggtt tggataagga atgttccaac      1680
     tcattgttgc taaagcacaa cttagttttc tccttgtcta gccagagagt tttagggaaa      1740
     acaaggcgaa tttacgcacc aatagctggc tattggaagt gaattcaacg cagttagcgc      1800
     taaaactggc tgctagaaag gcattaatta tccgcagctc aggttactta taactcagct      1860
     cggcggcgag tgaaagct                                                    1878
//