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EBI DbfetchID AB003475; SV 1; linear; genomic DNA; STD; PRO; 7209 BP. XX AC AB003475; XX DT 11-JUL-1997 (Rel. 52, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 4) XX DE Deinococcus radiodurans gene for aldehyde dehydrogenase, succinic DE semialdehyde dehydrogenase,partial and complete cds. XX KW aldA; aldehyde dehydrogenase; lexA; orf144a; orf144b; orf144c; orf144d; KW orf144e; orf144f; pprA; ssdA; succinic semialdehyde dehydrogenase. XX OS Deinococcus radiodurans OC Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; OC Deinococcus. XX RN [1] RP 1-7209 RA Narumi I.; RT ; RL Submitted (30-APR-1997) to the EMBL/GenBank/DDBJ databases. RL Issay Narumi, Japan Atomic Energy Research Institute, Biotechnology RL Laboratory; 1233 Watanuki, Takasaki, Gunma 370-12, Japan (Tel:0273-46-9542, RL Fax:0273-46-9688) XX RN [2] RA Narumi I., Du Z., Alatas Z., Kitayama S., Watanabe H.; RT "Isolation and characterization of pprA, a novel Deinococcus radiodurans RT gene involved in DNA repair"; RL Unpublished. XX RN [3] RA Narumi I., Kong X., Du Z., Cherdchu K., Kitayama S., Watanabe H.; RT "Cloning, sequencing and expression of the lexA-like gene of Deinococcus RT radiodurans"; RL Unpublished. XX CC Sequence updated (08-Jul-1997) XX FH Key Location/Qualifiers FH FT source 1..7209 FT /organism="Deinococcus radiodurans" FT /strain="KD8301" FT /mol_type="genomic DNA" FT /clone_lib="pDC144" FT /db_xref="taxon:1299" FT CDS complement(<1..774) FT /codon_start=1 FT /transl_table=11 FT /gene="aldA" FT /product="aldehyde dehydrogenase" FT /note="orf144f" FT /db_xref="GOA:Q9RYG9" FT /db_xref="HSSP:1O02" FT /db_xref="InterPro:IPR015590" FT /db_xref="UniProtKB/Swiss-Prot:Q9RYG9" FT /protein_id="BAA21372.1" FT /translation="MTVAEQQPQHQGYANPGTPGSVVTFKKRYDNFIGGQWVPPVKGQY FT FDNASPVDGKVFTQAARSTAEDVELALDAAHRAAPAWGRTSVTERSNILLKIADRMEQN FT LEMLAVAETWDNGKPVRETLAADLPLAIDHFRYFAGCIRAQEGGLSQIDDSTVAYHFHE FT PLGVVGQIIPWNFPLLMGVWKLAPALAAGNAVVLKPAEQTPASIMVLMELIADLLPEGV FT VNVVNGFGLEAGKPLASSPRIAKIAFTGETNTGRLI" FT CDS 1226..1801 FT /codon_start=1 FT /transl_table=11 FT /gene="orf144a" FT /db_xref="InterPro:IPR002155" FT /db_xref="UniProtKB/TrEMBL:O32503" FT /protein_id="BAA21373.1" FT /translation="MWSSAARYGPSPLPGSIQPGISGGELCGSRWSALRSTSSSRRQIC FT APSCPGVCSTVKSPSSVSPSCSAVSTFTPDGLIRLPARRRSRAAYSPSGTPSRASMASA FT PSLNASARRPGSSMTAAASACAATGAAVSVRTKGSPPTWSGCGWVMTRRERVSQLHASP FT YSSRTRFRPSSSPCWLKSKLLPASMSAV" FT repeat_region 1911..1937 FT /note="direct repeat" FT CDS 2143..2997 FT /codon_start=1 FT /transl_table=11 FT /gene="pprA" FT /function="DNA damage repair" FT /note="orf144b" FT /db_xref="GOA:O32504" FT /db_xref="UniProtKB/Swiss-Prot:O32504" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="BAA21374.1" FT /translation="MARAKAKDQTDGIYAAFDTLMSTAGVDSQIAALAASEADAGTLDA FT ALTQSLQEAQGRWGLGLHHLRHEARLTDDGDIEILTDGRPSARVSEGFGALAQAYAPMQ FT ALDERGLSQWAALGEGYRAPGDLPLAQLKVLIEHARDFETDWSAGRGETFQRVWRKGDT FT LFVEVARPASAEAALSDAAWDVIASIKDRAFQRELMRRSEKDGMLGALLGARHAGAKAN FT LAQLPEAHFTVQAFVQTLSGAAARNAEEYRAALKTAAAALEEYQGVTTRQLSEVLRHGL FT RES" FT variation 2588 FT /gene="pprA" FT /replace="a" FT /note="Base substitution has occurred at this position in FT mutant KH3111" FT CDS 3166..4317 FT /codon_start=1 FT /transl_table=11 FT /gene="orf144c" FT /note="This protein has a HTH DNA-binding motif (AA 2-25)" FT /db_xref="GOA:O32505" FT /db_xref="InterPro:IPR014622" FT /db_xref="UniProtKB/TrEMBL:O32505" FT /protein_id="BAA21375.1" FT /translation="MTKIFAKEWNMSDPGRALASFFATLPTRPQLLALGEPNHTDDAFP FT AQRNRLFRTLVEEYGFRSIALESDILAGQRVNAYVTGGADDLEEVMRTGFSHDFGRRAA FT NRELVGWLRDFNAGRSADEQVHFYGFDPPMENLWAASPRASLLTLHALLARQVPALPVS FT AATIERLCGDDARWANPAAGMDAAQSIGHSDEARQLRVLTDDLLHRLETGAPGLAEQPD FT FWEAQLAARTAAGLLRYHAVMADPAPDRIARMLAARDLLMAGHLLAIAEREQRCGPTLV FT FAHNLHLQRPLSRMKMGAQKIGAQTLDWWGAGAHVSRRLGERYAFIASYPGAAEETFLV FT PSSELTEAAATQLSVRDDGQPYSFPFKLSDLPFLNGALLVGQF" FT CDS 4370..5002 FT /codon_start=1 FT /transl_table=11 FT /gene="lexA" FT /function="SOS repair repressor" FT /note="orf144d" FT /db_xref="GOA:O32506" FT /db_xref="HSSP:1JHC" FT /db_xref="InterPro:IPR011056" FT /db_xref="UniProtKB/Swiss-Prot:O32506" FT /protein_id="BAA21376.1" FT /translation="MPPELTPTRRSILQATLRLGAGATAGQVAQEVGITKQAISQQVNI FT LRKLGYLQPAETRYGPLQVTDRARAALGEGLPIYGQIAAGIPALAEQSPEDFTPSIEAL FT LGLKAGDFLLRVRGESMTGIGVMDGDYVVVRPAPEVHDGEVAVVLVPGDNAATLKRLYH FT FGQDILLTSENPAMPRLSFPAEQVQVQGRMVGRVGVGAPRVSHRVTE" FT CDS 5183..6616 FT /codon_start=1 FT /transl_table=11 FT /gene="ssdA" FT /product="succinic semialdehyde dehydrogenase" FT /note="orf144e" FT /db_xref="GOA:O32507" FT /db_xref="HSSP:1O04" FT /db_xref="InterPro:IPR015590" FT /db_xref="UniProtKB/Swiss-Prot:O32507" FT /protein_id="BAA21377.1" FT /translation="MTATPQASARPERPFATVNPYTGETVKTFPFLESAEIPALIERAD FT QAYREWGQRPVTERAAIMRRAAELMLERTDELASLITLEMGKLLREAKGEVALAASILN FT YYGEQGPSFLEPKTIPVPQGEAAVLHAPLGVLLGIEPWNYPLYQVVRFAAPNLVVGNTV FT LLKHSELCPQSALALEQLFHDAGVPQGAYTNLFLRIADIEQVIAHPAVQGVSLTGSERA FT GASVAELAGRHLKKCVLELGGSDPFIVLDAEDLDTTVKAAATGRLSNTGQACIAAKRLM FT VVDDLYDEFVSRLGQTFSAFVPGDPADPSTRLGPLSSEQAARDLQAQVQDAIDKGATVV FT AGGQRPEHPGAFVQPTVLTDVTPDMRAYHEELFGPVAVVYRVRDEDEAVALANASTYGL FT GGAVFSSDLDRAQRVAERLDTGMVWINHPTSSAADLPFGGVKRSGFGRELSSMGMLEFT FT NQKLVRAFPTKQKPAQVAG" XX SQ Sequence 7209 BP; 1209 A; 2463 C; 2371 G; 1166 T; 0 other; gatcagccgc ccggtgttcg tctcgccggt aaaggcgatc ttggcgatgc gcggactgct 60 cgccagcggc ttgcccgctt ccagcccgaa gccgttgacc acgttgacca cgccctccgg 120 cagcaggtcg gcaatcagtt ccatcagcac catgatgctg gcgggggtct gttcggcggg 180 cttgagcacc accgcgttgc ccgccgcgag tgcgggcgcg agcttccaaa cgcccatcag 240 cagcgggaaa ttccagggaa taatctgccc caccacgccg agcggctcgt ggaagtggta 300 cgcgacggta ctgtcgtcga tctggctgag gccgccttcc tgcgcccgga tgcacccggc 360 gaagtagcgg aaatggtcga tggcgagcgg caggtcggcg gcgagcgtct cgcgcaccgg 420 cttgccgttg tcccaggttt cggcgaccgc cagcatctcg aggttctgct ccatgcggtc 480 ggcaatcttg agcaaaatgt tgctgcgttc ggtcacgctg gtgcggcccc aggcgggcgc 540 ggcccggtgc gcggcgtcga gcgcgagttc gacgtcctcg gcggtcgagc gggcggcctg 600 ggtaaacacc ttgccgtcca ccggcgaagc gttgtcgaaa tactgcccct tcacgggcgg 660 cacccactgc ccaccgatga aattgtcgta gcgcttcttg aaggtgacga cactgccggg 720 cgtgccgggg ttggcgtagc cctggtgctg cggttgctgt tcggcgacgg tcatagaaaa 780 ccctcctgcg gaagacggaa acgaaaagcc gcgcgtcccc acggggcagc cagacgacac 840 gccgccgcgt gaggaaagcc atcagattgt ttgaacgtcc gcagtctagc agggttggcc 900 tgaactgggc tggagtcagg cccgctggta cgtccagcgc tcgccgtccg cggcctgttc 960 gcgcgtttcg tgcaattcgc cccgcaccac gagttcctcg acgagcgccg ccgtctggtc 1020 gagcagcaag agcgcctggg ccgcacgcaa gcggggattg accgcgcagg tcagcgcgta 1080 gatggtctgc ggctcgctgg cggcgccgag caccccacgc agcttgtcgt cgtagcggcg 1140 gcgcagaaag tccacgcgtc cgcgccagtc gggcatcggc tcgtcgtggc tgccgagcgc 1200 gaggtcgacg ccctccagcg tttcgatgtg gtccagcgcg gcgaggtacg gccccagccc 1260 gctgcccggc agcatccagc ccggcatcag cggcggcgag ttgtgcggga gcaggtggtc 1320 ggcgctcagg agcacctcgt ccagccgcag gcaaatctgc gcgccgtcgt gccccggcgt 1380 gtgcagcacg gtaaaaagcc catcgagcgt gtcgccgtct tgcagcgccg tctccacctt 1440 caccccggac ggactcatca ggttgcccgc ccgccgccgc agccgcgccg catactcgcc 1500 ctcgggcaca ccgagccgcg cgagcatggc gtccgccccc agcttgaacg cctcggcgcg 1560 gcgccccggc tcctcgatga ccgccgccgc cagcgcgtgt gctgccaccg gagccgccgt 1620 cagcgtccgc acgaagggca gcccgcccac atggtccggg tgcgggtggg tgatgacgag 1680 gcgcgagagg gtctcccagc tccacgcctc gccatactcc tcgcgcacgc gcttcaggcc 1740 atctagcagc ccttgctggc tgaagtcgaa gctgctgccc gcgtcgatga gcgccgtgta 1800 gctcggctgc tgcgggtcgc ccaccacgac aagaaagaca ttgaccccga ggtgctcaaa 1860 cgcgcggata ccgatggtgt agattctcgc gccgctggcg gtgacgtggc gggtgacggt 1920 ggggtgggtg acggtggaag cggcggaagc ggtcacggcc ccactgtagt ccgcacctgt 1980 gccctgaacg gcgccgggtg cactttgggt gtcactgtca tctggacgtt tctttcgccg 2040 tgaaagctgg caaaggcaca aagaccgccg aagctgggtt ttccttatgc cagagtgcta 2100 cccctggcct ttttaatctg ttcagggcat aataaaggca gtatggcaag ggctaaagca 2160 aaagaccaaa cggacggcat ctacgccgcc ttcgacacct tgatgagcac ggcgggcgtg 2220 gacagccaga tcgccgccct cgccgcgagt gaggccgacg cgggcacgct ggacgcggcg 2280 ctcacgcagt ccttgcaaga agcgcagggg cgctgggggc tggggctgca ccacctgcgc 2340 catgaggcgc ggctgaccga cgacggcgac atcgaaattc tgaccgatgg ccgccccagc 2400 gcccgcgtga gcgagggctt cggagcactc gcgcaggcct acgcgcccat gcaggcgctc 2460 gacgaacgcg gcctgagcca gtgggcggcg ctcggcgagg gctaccgcgc tcccggcgac 2520 ttgccgttgg cgcagctcaa ggtgctgatc gagcacgccc gcgacttcga aaccgactgg 2580 tcggcggggc gcggcgaaac ctttcagcgc gtgtggcgca agggcgacac cctgtttgtc 2640 gaggtggccc ggcccgcgtc cgccgaggcc gcgctctccg acgctgcctg ggacgtgatc 2700 gccagcatca aggaccgcgc cttccagcgt gagctgatgc gccgcagcga gaaggacggg 2760 atgctcggcg ccctgctcgg ggctcgccac gccggggcca aggccaacct cgcccagctg 2820 cccgaagcgc acttcaccgt gcaggcgttc gtgcagaccc tcagcggagc cgccgcccgc 2880 aacgccgagg agtaccgcgc ggccctgaaa accgccgccg ctgcgctgga ggaataccag 2940 ggcgtgacca cccgccaact gtccgaagtg ctgcggcacg gcctgcgcga gagctgagtc 3000 aagaaaagca aaggcgtctg ggagtccttt tcaggcgccg tttttcatgc tgctatctct 3060 ttgagtaaag actccatgaa gatgtttccg taagctttct caggcgttgc acaggaagga 3120 tgaacgagcc aaagcgggcc ccccttctgg caaaggagtc tttccatgac caaaatcttc 3180 gcgaaagaat ggaacatgtc ggaccccggt cgggcgctcg cgtccttctt cgccactctc 3240 ccgacgcgcc cccaactgct ggcattgggc gaacccaacc acaccgacga cgcctttccg 3300 gcgcagcgca accgcctgtt tcgcacgctc gtcgaggagt acggctttcg ttcgattgct 3360 ctggaaagcg acatcctggc ggggcagcgg gtcaacgctt atgtgacggg cggcgcggac 3420 gaccttgaag aggtcatgcg gacaggcttc agccacgact ttggccgccg ggccgccaac 3480 cgcgaactgg tgggctggct gcgcgacttc aacgcggggc gctctgcgga cgagcaggtg 3540 cacttctacg gcttcgaccc gccgatggaa aacctctggg cggcgagtcc ccgcgccagt 3600 ctgctcacgc tgcacgcttt gctcgcccgc caggtgcccg cgttgcctgt gagcgccgcg 3660 accatcgagc gcctgtgcgg agacgacgcc cgctgggcca atccagcggc gggaatggac 3720 gccgcacagt ccatcggcca cagcgacgag gcgcggcaat tgcgggtgct gaccgacgac 3780 ctccttcacc ggctcgaaac cggggcgccg ggcctggccg agcagccgga tttctgggag 3840 gcgcaactcg ccgcccgcac cgctgccggc ctgctccgct accacgcggt gatggcggac 3900 cccgccccgg accgcattgc ccggatgctc gccgcgcgtg acctgctgat ggccgggcac 3960 ctgctcgcca ttgccgagcg cgagcagcgg tgcgggccga cgctggtctt cgcccacaac 4020 ctgcacctgc aacgcccgct cagccgtatg aagatggggg cccagaagat aggggctcag 4080 acgctcgact ggtggggcgc cggggcgcac gtcagccgcc gcctaggcga gcgctacgcc 4140 ttcatcgcca gttatccggg cgccgcagag gagacttttc tggtgccttc ttccgaactc 4200 acggaagctg cggccaccca gttgtcagtc agggacgacg gtcagcccta ttcttttccg 4260 ttcaaactct ctgacctccc gtttctgaac ggtgcgctcc tcgtaggcca attctgacgg 4320 ttgggccgcc gcttgacccg tgacaaggcg tgcggcaaac tgcgcgcaca tgccgcctga 4380 actgacgccc acccgccgct ccatcctgca agccaccctg cgtctgggcg cgggggccac 4440 ggcggggcag gtggcgcagg aagtgggcat caccaagcag gcaatcagcc agcaggtgaa 4500 catcctgcgc aagctcggct acctccagcc ggccgaaacg cgctacggcc cgttgcaggt 4560 cacggaccgg gcgcgggcgg cgctgggcga agggctgccg atctacggcc agatcgccgc 4620 cggcatcccg gcccttgccg agcagtcgcc cgaggacttt acccccagca tcgaggcgct 4680 gctcggcctg aaagcgggcg atttcttgct gcgggtgcgc ggcgaaagca tgaccggcat 4740 cggcgtgatg gacggcgact acgtggtggt gcgcccggcg cccgaggtcc acgacggcga 4800 ggtggcggtg gtcctcgtgc ccggcgacaa tgcggcgacc ctcaagcggc tgtaccactt 4860 cggccaggac atcctcctga cgagcgagaa ccccgccatg ccgcgcctgt cttttcccgc 4920 cgagcaggtg caggtgcagg ggcgaatggt ggggcgcgtc ggggtcgggg cgccgcgcgt 4980 gagccaccgc gtgaccgagt agaagctcga ctgtcccgca cggctcgggc aggtgtcatt 5040 gtcgggaatg tcggcaacaa ccaggagcgg ccacagagag cagtatcttc aaggctttac 5100 ccggcactca tacccttgcc gcgccggggg agtctagtgc gcggtgttgt cctgggcgcg 5160 ccccaggcac tgaggagaag ccatgactgc caccccccaa gcgtccgccc gtcccgagcg 5220 tccctttgcc actgtcaacc cctacaccgg cgaaacggtc aagacctttc cctttttgga 5280 gagcgccgaa attccggccc tcatcgagcg cgccgaccag gcctaccgcg agtggggcca 5340 acgcccggtg acggagcggg ccgcgatcat gcgccgcgcc gccgagttga tgctcgagcg 5400 cactgatgaa cttgccagcc tgatcacgct cgaaatgggc aagctgctgc gcgaggccaa 5460 gggcgaagtc gcgctcgccg ccagcatcct caactactac ggcgagcagg gcccgagctt 5520 cctcgaaccc aagaccatcc cggtgccgca gggtgaagcc gccgtgctgc acgcgccgct 5580 gggcgtcctg ctcggcatcg agccgtggaa ctacccgctg tatcaggtcg tgcgttttgc 5640 tgcgcccaac ctcgtcgtcg gcaacacggt gctgctcaag cactccgaac tctgcccaca 5700 gtcggcgctc gccctcgaac aactgttcca tgacgcgggc gtgccgcagg gggcctacac 5760 caacctgttt ctgcggattg ccgacatcga acaggtcatc gcgcaccccg ccgtacaggg 5820 cgtgtcgctc accggcagcg agcgcgccgg ggcgagcgtg gccgaactgg cggggcggca 5880 cctgaaaaag tgcgtgctgg aactcggcgg cagtgacccc ttcatcgtgc tcgacgccga 5940 ggacctcgac acgacggtca aggcggcggc cacggggcgc ctgagcaaca ccgggcaggc 6000 ctgcatcgcg gccaagcgcc tgatggtcgt ggacgacctg tacgacgagt tcgtgtcccg 6060 gctgggtcag accttctcgg ccttcgtgcc cggcgacccc gccgaccctt cgacccgcct 6120 ggggccgctg tcttccgaac aggccgcccg tgacttgcag gcgcaggtgc aagacgccat 6180 cgacaaaggt gcgaccgtcg tcgcgggcgg gcagcgaccc gagcatcccg gcgccttcgt 6240 gcagcctacc gtgctcaccg acgtgacacc cgacatgcgc gcctaccacg aggaactgtt 6300 cggcccggtg gcggtcgtct accgcgtgcg cgacgaggac gaagccgtag cgctggcgaa 6360 cgcttcgacc tatgggctgg gcggcgcggt gttcagcagc gacctcgacc gggcgcagcg 6420 ggtggccgag cgcctcgaca ccggcatggt ctggatcaac caccccacgt cctccgccgc 6480 tgacctgccc ttcggcggcg tcaaacgctc gggtttcggg cgtgagctgt cctcgatggg 6540 aatgctcgaa ttcaccaacc agaagctggt gcgcgctttc ccgaccaagc aaaagcccgc 6600 gcaggtcgct ggctgagcga gcgcccctgt tgaaaaaagt gctgctgtcc caggttcgac 6660 tggatgacag cggcactttt gatgttgatt cttccgaaaa ctgctgaccg ctcagtgatc 6720 ttccttgaac catatagaat cagtttcttc cccgcgccgc cccactttca tgcggtacat 6780 ccgggcgtcg ctgacgcgca gcaggtcacc ggcggtggca gcatctctgt tgtagcaggc 6840 gctcccatag ctgaagctga taccaggctg tccagtaacc cgcaaattct gaggcaaccg 6900 ccgcaggacc tggacgatgt cctgctcggt gacgtccaga ttccacaaaa cggcgaactc 6960 gtcgccgccg atgcggtaag tcttgccggc agcgcaactc tggcgcaagc acaacgcaaa 7020 ttgccgcagc aactgatcac cgtactggtg gccctgcgag tcgttgattt ccttcaggct 7080 gtccagatcg agcgacgtca tgtagaagtc caccgcgccg gggtaaatcc gctgctcgag 7140 gtcaagttcg agcgcccgtc tgttgtgcag gccggtcaaa ctgtccgaca gggcaagttg 7200 caggagctc 7209 // |
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