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EBI DbfetchID AB003413; SV 1; linear; genomic RNA; STD; VRL; 3946 BP. XX AC AB003413; XX DT 24-APR-1999 (Rel. 59, Created) DT 14-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Mumps virus genomic RNA for fusion protein, SH protein and HN protein, DE complete cds, strain:MP 77-M. XX KW HN protein; SH protein. XX OS Mumps virus OC Viruses; ssRNA negative-strand viruses; Mononegavirales; Paramyxoviridae; OC Paramyxovirinae; Rubulavirus. XX RN [1] RP 1-3946 RA Nakayama T.; RT ; RL Submitted (28-APR-1997) to the EMBL/GenBank/DDBJ databases. RL Tetsuo Nakayama, The Kitasato Institute, Department of Virology 1; 5-9-1, RL Shirokane, Minato-ku, Tokyo 108, Japan (E-mail:kibanate@kiwi.co.jp, RL Tel:81-3-3444-6161(ex.2135), Fax:81-3-3444-6637) XX RN [2] RX DOI; 10.1007/s007050050527 RX PUBMED; 10226622. RA Kashiwagi Y., Takami T., Mori T., Nakayama T.; RT "Sequence analysis of F, SH, and HN genes among mumps virus strains in RT Japan"; RL Arch. Virol. 144(3):593-599(1999). XX FH Key Location/Qualifiers FH FT source 1..3946 FT /organism="Mumps virus" FT /strain="MP 77-M" FT /mol_type="genomic RNA" FT /db_xref="taxon:11161" FT 5'UTR 1..63 FT CDS 64..1680 FT /product="fusion protein" FT /db_xref="GOA:Q9WAF1" FT /db_xref="HSSP:1SVF" FT /db_xref="InterPro:IPR000776" FT /db_xref="UniProtKB/TrEMBL:Q9WAF1" FT /protein_id="BAA76978.1" FT /translation="MKAFLVTCLGFAVFSSSVCVNINILQQIGYIKQQVRQLSYYSQSS FT SSYIVVKLLPNIQPTDNSCEFKSVTQYNKTLSNSLLPIAENINNIASPSSGSRRHKRFA FT GIAIGIAALGVATAAQVTAAVSLVQAQTNARAIAAMKNSIQATNRAVFEVKEGTQQLAI FT AVQAIQDHINTIMNTQLNNMSCQILDNQLATSLGLYLTELTTVFQPQLINPALSPISMQ FT ALRSLLGSMTPAVVQATLSTSISAAEILSAGLMEGQIVSVLLDEMQMIVKINIPTIVTQ FT SNALVIDFYSISSFINNQESIIQLPDRILEIGNEQWSYPAKNCKLTRHHIFCQYNEAER FT LSLESKLCLAGNISACVFSPIAGSYMRRFVALDGTIVANCRSLTCLCKSPSYPIYQPDH FT HAVTTIDLTACQTLSLDGLDFSIVSLSNITYAENLTISLSQTINTQPIDISTELSKVNA FT SLQNAVKYIKESNHQLQSVSVNSKIGAIIVAALVLSILSIIISLLFCCWAYIATKEIRR FT INFKTNHINTISSSVDDLIRY" FT 3'UTR 1681..1728 FT 5'UTR 1736..1785 FT CDS 1786..1959 FT /product="SH protein" FT /db_xref="GOA:Q9WAF2" FT /db_xref="InterPro:IPR001477" FT /db_xref="UniProtKB/TrEMBL:Q9WAF2" FT /protein_id="BAA76979.1" FT /translation="MPAIQPPLYPTFLLLILLSLIITLYAWIISTITYKTAVRHAALYQ FT RSFFCWSFDHSL" FT 3'UTR 1960..2051 FT 5'UTR 2054..2131 FT CDS 2132..3880 FT /product="HN protein" FT /db_xref="GOA:Q9WAF3" FT /db_xref="HSSP:1USR" FT /db_xref="InterPro:IPR016285" FT /db_xref="UniProtKB/TrEMBL:Q9WAF3" FT /protein_id="BAA76980.1" FT /translation="MGPSKLFTMSDNATFAPGPVINAADKKTFRTCFRILVLSVQAVTL FT ILVIVTLGELVSMINDQGLSNQLSSIADKIRESATMIASAVGVMNQVIHGVTVSLPLQI FT EGNQNQLLSTLATICTGKKQVSNCSTNIPLVNDLRFINGINKFIIEDYATHDFSIGHPL FT NMPSFIPTATSPNGCTRIPSFSLGKTHWCYTHNVINANCRDHTSSNQYISMGILVQTAS FT GYPMFKTLKIQYLSDGLIRKSCSIATVPDGCAMYCYVSTQLETDDYAGSSPPTQKLTLL FT FYNDTVTERTISPTGLEGNWATLVPGVGSGIYFENKLIFPAYGGVLPNSTLGVKSAREF FT FRPVNPYNPCSGPQQDLDQRALKSYFPSYFSNRRVQSAFLVCAWNQILVTNCELVVPSN FT NQTLMGAEGRVLLINNRLLYYQRSTSWWPYELLYEISFTFTNSGQSSVNMSWIPIYSFT FT RPGSGNCSGENVCPTACVSGVYIDPWPLTPYSHQSGINRNFYFTGALLNSSTTRVNPTL FT YVSALNNLKVLAPYGNQGLFASYTTTTCFQDTGDTSVYCVYIMELASNIVGEFQILPVL FT TRLTIT" FT 3'UTR 3881..3946 XX SQ Sequence 3946 BP; 1207 A; 891 C; 732 G; 1116 T; 0 other; aagcctagaa ggatatctta cttctcgact ttccaacttt gaaaatagaa ttgatcagta 60 atcatgaagg cttttttagt tacttgctta ggctttgcag tcttttcatc ttctgtatgt 120 gtgaatatca acatcttgca gcaaattgga tatatcaagc aacaagtcag gcaactaagc 180 tattactcac aaagttcaag ctcctacata gtggtcaagc ttttaccgaa tatccaaccc 240 actgataata gctgtgaatt taagagtgta actcaataca ataagacctt gagtaattcg 300 cttcttccaa ttgcagaaaa cataaacaat attgcatcgc cctcatctgg gtcaagacgg 360 cataaaaggt ttgctggcat tgctattggc attgctgcgc tcggtgttgc gaccgcagca 420 caagtaactg ccgctgtctc attagttcaa gcacagacaa atgcacgtgc aatagcggca 480 atgaaaaatt caatacaagc aactaatcga gcagtcttcg aagtgaagga aggcactcaa 540 cagttagcta tagcggtaca agcaatacaa gaccacatca atactattat gaatacccaa 600 ttgaacaata tgtcttgtca gatccttgat aaccagcttg caacttccct aggattatac 660 ctaacagaat taacaacagt gtttcagcca caattaatta atccggcatt gtcaccaatt 720 agtatgcaag ccttgaggtc tttgcttggg agtatgacgc ctgcagtggt ccaagcaaca 780 ttatctactt caatttctgc tgctgaaata ctaagtgccg gtctaatgga gggtcagatt 840 gtttctgttc tgctagatga gatgcagatg atagttaaga taaatattcc aaccattgtc 900 acacaatcaa atgcattggt gattgacttc tactcaattt cgagctttat taataaccag 960 gaatccataa ttcaattgcc agacagaatc ttggagatcg ggaatgaaca atggagctat 1020 ccagctaaaa attgtaagtt gacaagacac cacatattct gccaatacaa tgaggcagag 1080 aggctgagcc tagagtcaaa actatgcctt gcaggcaata taagtgcctg tgtgttctca 1140 cccatagcag ggagttatat gaggcgattt gtggcactgg atggaacaat tgttgcaaac 1200 tgtcgaagtc taacgtgtct atgcaagagt ccatcttatc ctatatacca acctgaccat 1260 catgcagtca cgaccattga tctaaccgca tgtcaaacat tgtccctaga cggattggat 1320 ttcagcattg tctctctaag caacatcact tacgctgaga accttaccat ttcattatct 1380 cagacaatca atactcaacc cattgacata tcaactgagc tgagtaaggt taatgcatcc 1440 ctccaaaatg ccgttaagta cataaaggag agcaaccatc agctccaatc tgtgagtgta 1500 aactccaaaa tcggagctat aattgtagca gccttagttt tgagcattct gtcaattatc 1560 atttcgctat tgttttgctg ctgggcttac attgcaacta aagaaatcag aagaatcaac 1620 ttcaaaacaa atcatatcaa tactatatca agtagtgtcg atgatctcat taggtactaa 1680 gcctaacctt gtgattcatc ctgcattgag aaaaaattta gaaaaaaact aaattaagaa 1740 tgaatctcct ggggtcgtaa cgtctcgtga ccctgccgtt gcactatgcc ggcaatccaa 1800 cctcccttat acccaacatt tctattgcta attcttctct ctctgatcat aactttgtat 1860 gcctggatta tatcaaccat cacttacaag actgcagtgc gacatgcagc actgtaccag 1920 agatccttct tttgctggag tttcgatcac tcactctaga aagatctcca gttgggacaa 1980 gtcccaatcc atcatgcgag aacaagctgc atttaaatga tgccgttcaa tcatgagaca 2040 taaagaaaaa accaagccag aactagctta ggatcacaat accacacaga accccagctg 2100 ctatcataac tgttctctag ccgctcgaaa gatggggccc tcaaaactct tcacaatgtc 2160 agacaatgcc acctttgcac ctgggcctgt tatcaatgca gctgacaaga agacattccg 2220 aacctgcttc cgaatattgg tactatctgt acaagctgtt acccttatat tagttattgt 2280 cactttaggt gagcttgtga gtatgatcaa tgatcaaggc ttgagcaatc agttgtcttc 2340 aattgcagac aagataagag agtcagctac tatgattgca tctgctgtgg gagtaatgaa 2400 tcaagttatt cacggagtaa cggtatcctt acccctacaa attgagggaa accaaaatca 2460 attgttatcc acacttgcca caatctgtac aggcaaaaaa caagtctcaa actgctctac 2520 aaacattccc ttagttaatg accttaggtt tataaatggg atcaataaat tcatcattga 2580 agattatgca actcatgatt tctctatcgg ccatccactc aacatgccta gctttatccc 2640 aactgcaact tcacccaatg gttgcacaag aattccatcc ttttctctag gtaagacaca 2700 ctggtgctac acacataatg taattaatgc caactgcagg gatcatactt cgtctaacca 2760 atatatttcc atggggatac tcgttcagac cgcgtcaggg tatcccatgt tcaaaacctt 2820 aaaaatccaa tatctcagtg atggcctgat tcggaaaagc tgctcaattg caacagtccc 2880 tgatggatgc gccatgtact gttacgtctc aactcaactt gaaaccgacg actatgcggg 2940 gtccagccca cctacccaga aacttaccct gttattctac aatgataccg tcacagaaag 3000 gacaatatct ccaactggtc ttgaagggaa ttgggctact ttggttccag gagtggggag 3060 tggaatatat ttcgagaata aattgatctt tcctgcatat gggggggtct tgcccaatag 3120 tacactcgga gttaaatcag caagagaatt tttccggcct gttaatccat ataatccatg 3180 ttcaggacca caacaagatt tagatcagcg tgctttgaaa tcatacttcc caagttactt 3240 ctctaatcga agagtacaga gtgcatttct tgtctgtgcc tggaatcaga tcctagttac 3300 aaattgcgag ctagttgtcc cctcaaacaa tcagacactg atgggtgcag aagggagagt 3360 tttattgatc aataatcgac tattatatta tcagagaagt accagctggt ggccgtatga 3420 actcctctat gagatatcat tcacctttac aaactctggt caatcatctg tgaatatgtc 3480 ctggatacct atatattcat tcactcgtcc tggttcaggc aactgcagtg gtgaaaatgt 3540 gtgcccaact gcttgtgtgt caggggttta tattgatccc tggccattaa ctccatatag 3600 ccaccaatca ggcattaaca gaaatttcta cttcacaggt gcactgttaa attcaagcac 3660 aactagagta aatcctaccc tttatgtctc tgcccttaat aatcttaaag tactagcccc 3720 atatggtaat cagggactgt ttgcctcgta caccacaacc acctgctttc aagataccgg 3780 tgatactagt gtgtattgtg tttatattat ggaactagca tcgaatatcg ttggagaatt 3840 ccagattcta cctgtgctaa ccagactgac catcacctga gtcatagtga atgcagcggg 3900 aggccctatg ggcgtgtctc aattttcatc aattattaag aaaaaa 3946 // |
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