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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AAVX01008311; SV 1; linear; genomic DNA; WGS; VRT; 2078 BP.
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AC   AAVX01008311; AAVX01000000; AAVX00000000;
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PR   Project:18361;
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DT   11-JAN-2007 (Rel. 90, Created)
DT   04-DEC-2008 (Rel. 98, Last updated, Version 2)
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DE   Callorhinchus milii scaf_1099306868983, whole genome shotgun sequence.
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KW   WGS.
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OS   Callorhinchus milii (ghost shark)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes;
OC   Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus.
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RN   [1]
RP   1-2078
RX   DOI; 10.1126/science.1130708
RX   PUBMED; 17185593.
RA   Venkatesh B., Kirkness E.F., Loh Y.H., Halpern A.L., Lee A.P., Johnson J.,
RA   Dandona N., Viswanathan L.D., Tay A., Venter J.C., Strausberg R.L.,
RA   Brenner S.;
RT   "Ancient noncoding elements conserved in the human genome";
RL   Science 314(5807):1892-1892(2006).
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RN   [2]
RP   1-2078
RA   Venkatesh B., Kirkness E.F., Loh Y.-H., Halpern A.L., Lee A.P., Johnson J.,
RA   Dandona N., Viswanathan L.D., Tay A., Venter J.C., Strausberg R.L.,
RA   Brenner S.;
RT   ;
RL   Submitted (20-DEC-2006) to the EMBL/GenBank/DDBJ databases.
RL   Institute of Molecular and Cell Biology, 61 Biopolis Drive, Singapore
RL   138673, Singapore
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DR   GOA; P0C5A2.
DR   HSSP; 1VHR; P51452.
DR   InterPro; IPR016130; Tyr_Pase_AS.
DR   UniProtKB/Swiss-Prot; P0C5A2; DUPD1_CALMI.
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CC   This version of the project represents approximately 1.4x coverage
CC   of the genome.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2078
FT                   /organism="Callorhinchus milii"
FT                   /isolate="IMCB2004"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia:Tasmania; Hobart"
FT                   /sex="male"
FT                   /tissue_type="testis"
FT                   /db_xref="taxon:7868"
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SQ   Sequence 2078 BP; 627 A; 436 C; 388 G; 627 T; 0 other;
     accttaatag acacactgag tcttctactg tgaggaacaa taataacaca taattggtga        60
     aggtatttcg agagtcaaca tttcagtggc tgtaattggt atatgtaata aattacattt       120
     taaaatgtaa aaaaagaaag tatagttttc aagaatgaaa gataacaata atggtgtgca       180
     tcatgtttca gaatgtcttg ggaagagaca gacaggggat ttgcatcaag atcaaaacta       240
     ccttctgcat taaaaaacga aagtgaagac aattatgaac ctcctaattt atctgatctc       300
     catcgcctcc tctggacaaa agcagaatct gggcacgttg atcaagtctg gccaaacctt       360
     tacctgggag atgcgtaagc atatacagta cataccacac aaagcttact tgcccttgcc       420
     acatagaggc taggaataga atcaaaatat tcagttgctt acaaaatggc catcgcttct       480
     ttttaatttt ttatatattg tacctatttt tcatattatt gctctccgtt gtcccacccc       540
     cagtctgata tctttttcat tgattttgat tcacaaaagc cagtcatcca cacttgagaa       600
     ttccagctca tggctgttgg ttagaaggat agcacgttaa ccattgagtt ttttaaaaaa       660
     acattaagca attttcatcc catttactcc tgtgggaagt gaaattgatc aatcaagcca       720
     tttgccacca aaagactgaa agaattgatt gcccttttta ccaggtggac tgctcgagac       780
     aaagccactc tccagagatt gaagattact cacatcctca acagtgccca tggaaagttc       840
     aacatcaata caggagcaaa ttattataag gatatgctaa tacattacta tggaattgag       900
     gcatttgata gcccggattt caatctcagt gtcttttttt actcagctgc aaaattcatc       960
     cgagctggtc tgaacacacc tggaggtaag tagctgttct ctgacagtgc aatgttgttt      1020
     aatagaagct cagcgaaccc tcgctccata tggcttcctc ccccggctgt ccttcatttc      1080
     tgtcctattt ccatttgtaa tagaccaggt aattaagaaa tacttgtgat gcccgtgggg      1140
     ttaagtggcc cttgacacat tggaacaaat cggaattttg cctgacataa gtataataaa      1200
     acagctcgtc ttcctgtgtc aggggtcagc agctacccct tgggttcagc acaggaggga      1260
     tagtccatgt acagacaggt tggcagtttg agtgacccag catctaattt tctgctctca      1320
     ctggtatcaa gatgccaaaa gataggtcca gctgttctac agacctgtct caggaagagt      1380
     cacaaattgc tgttaatgag aagtcggtta tgttcataga agcaaaggat ccgcaacact      1440
     tagaaggtct ggaattctac ctagctttag cacgcgtagc cattttgtat taaaattgaa      1500
     gactgtgcag aattatggaa aattcttaat ttcaccctga atttggaatc tgttcttcca      1560
     ctgttcttaa agagaaccag tttccaaatt aaaactggag ttgaaaatgt tccataattc      1620
     tgcgcaatcg cacattttaa gacaaaatgg tcttcttaca ggctggatgg tgatcaggag      1680
     taggggtttt tctcttctta aatccagggg ctctgaggtc aattgtagca tctcaacagc      1740
     tgaacttgct gagatcaggt aattcaacac agttttccca acaagccatc aaaggagctc      1800
     ttgggatcat ttcttaattg tttaaagttc tggttcagcc aaatgacaca ttgatttgtc      1860
     tcagtgttaa catactcatc attcatagaa ttataaagac tataccaccc cgaaagaggc      1920
     tatttggcac atctagtcca tgttagtgtt tatacaccat atgagcctcc actcctccta      1980
     catccctctc tctacctcct tccataccct tctattcact tttctctctt gtattcctct      2040
     gaggatggtt taaaaatagg aaagactaag gcaaaaat                              2078
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