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EBI DbfetchID AAFI02000260; SV 1; linear; genomic DNA; WGS; INV; 2525 BP. XX AC AAFI02000260; AAFI02000000; AAFI00000000; XX PR Project:201; XX DT 04-APR-2006 (Rel. 87, Created) DT 05-SEP-2009 (Rel. 102, Last updated, Version 8) XX DE Dictyostelium discoideum AX4 DDB0229814.02, whole genome shotgun sequence. XX KW WGS. XX OS Dictyostelium discoideum AX4 OC Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium. XX RN [1] RP 1-2525 RX DOI; 10.1038/nature03481 RX PUBMED; 15875012. RG The Dictyostelium discoideum Sequencing Consortium RA Eichinger L., Pachebat J.A., Glockner G., Rajandream M.A., Sucgang R., RA Berriman M., Song J., Olsen R., Szafranski K., Xu Q., Tunggal B., RA Kummerfeld S., Madera M., Konfortov B.A., Rivero F., Bankier A.T., RA Lehmann R., Hamlin N., Davies R., Gaudet P., Fey P., Pilcher K., Chen G., RA Saunders D., Sodergren E., Davis P., Kerhornou A., Nie X., Hall N., RA Anjard C., Hemphill L., Bason N., Farbrother P., Desany B., Just E., RA Morio T., Rost R., Churcher C., Cooper J., Haydock S., van Driessche N., RA Cronin A., Goodhead I., Muzny D., Mourier T., Pain A., Lu M., Harper D., RA Lindsay R., Hauser H., James K., Quiles M., Madan Babu M., Saito T., RA Buchrieser C., Wardroper A., Felder M., Thangavelu M., Johnson D., RA Knights A., Loulseged H., Mungall K., Oliver K., Price C., Quail M.A., RA Urushihara H., Hernandez J., Rabbinowitsch E., Steffen D., Sanders M., RA Ma J., Kohara Y., Sharp S., Simmonds M., Spiegler S., Tivey A., Sugano S., RA White B., Walker D., Woodward J., Winckler T., Tanaka Y., Shaulsky G., RA Schleicher M., Weinstock G., Rosenthal A., Cox E.C., Chisholm R.L., RA Gibbs R., Loomis W.F., Platzer M., Kay R.R., Williams J., Dear P.H., RA Noegel A.A., Barrell B., Kuspa A.; RT "The genome of the social amoeba Dictyostelium discoideum"; RL Nature 435(7038):43-57(2005). XX RN [2] RP 1-2525 RG The Dictyostelium discoideum Sequencing Consortium RA Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.-A., Sucgang R., RA Song J., Cox E.C., Tunggal B., Szafranski K., Konfortov B.A., RA Farbrother P., Bankier A.T., Lehmann R., Hamlin N., Xu Q., Davies R., RA Gaudet P., Fey P., Pilcher K., Chen G., Saunders D., Sodergren E., RA Davis P., Nie X., Kerhornou A., Hemphill L., Bason N., Berriman M., RA Desany B., Churcher C., Cooper J., van Driessche N., Cronin A., RA Goodhead I., Muzny D., Hall N., Harper D., Lindsay R., Hauser H., James K., RA Quiles M., Buchrieser C., Wardroper A., Thangavelu M., Johnson D., RA Knights A., Loulseged H., Mungall K., Price C., Ma J., Quail M., RA Hernandez J., Rabbinowitsch E., Steffen D., Sanders M., Weinstock G., RA Sharp S., Just E., Shaulsky G., Simmonds M., Tivey A., White B., Walker D., RA Woodward J., Winckler T., Schleicher M., Rosenthal A., Rivero F., RA Chisholm R.L., Gibbs R., Loomis W.F., Platzer M., Kay R.R., Williams J., RA Dear P.H., Noegel A.A., Barrell B., Kuspa A.; RT ; RL Submitted (08-OCT-2004) to the EMBL/GenBank/DDBJ databases. RL dictyBase, Center for Genetic Medicine, Northwestern University, 303 E RL Chicago Ave, Chicago, IL 60611, USA XX RN [3] RP 1-2525 RG The Dictyostelium discoideum Sequencing Consortium RA Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.-A., Sucgang R., RA Song J., Cox E.C., Tunggal B., Szafranski K., Konfortov B.A., RA Farbrother P., Bankier A.T., Lehmann R., Hamlin N., Xu Q., Davies R., RA Gaudet P., Fey P., Pilcher K., Chen G., Saunders D., Sodergren E., RA Davis P., Nie X., Kerhornou A., Hemphill L., Bason N., Berriman M., RA Desany B., Churcher C., Cooper J., van Driessche N., Cronin A., RA Goodhead I., Muzny D., Hall N., Harper D., Lindsay R., Hauser H., James K., RA Quiles M., Buchrieser C., Wardroper A., Thangavelu M., Johnson D., RA Knights A., Loulseged H., Mungall K., Price C., Ma J., Quail M., RA Hernandez J., Rabbinowitsch E., Steffen D., Sanders M., Weinstock G., RA Sharp S., Just E., Shaulsky G., Simmonds M., Tivey A., White B., Walker D., RA Woodward J., Winckler T., Schleicher M., Rosenthal A., Rivero F., RA Chisholm R.L., Gibbs R., Loomis W.F., Platzer M., Kay R.R., Williams J., RA Dear P.H., Noegel A.A., Barrell B., Kuspa A.; RT ; RL Submitted (22-JAN-2008) to the EMBL/GenBank/DDBJ databases. RL dictyBase, Center for Genetic Medicine, Northwestern University, 303 E RL Chicago Ave, Chicago, IL 60611, USA XX RN [4] RP 1-2525 RG The Dictyostelium discoideum Sequencing Consortium RA Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.-A., Sucgang R., RA Song J., Cox E.C., Tunggal B., Szafranski K., Konfortov B.A., RA Farbrother P., Bankier A.T., Lehmann R., Hamlin N., Xu Q., Davies R., RA Gaudet P., Fey P., Pilcher K., Chen G., Saunders D., Sodergren E., RA Davis P., Nie X., Kerhornou A., Hemphill L., Bason N., Berriman M., RA Desany B., Churcher C., Cooper J., van Driessche N., Cronin A., RA Goodhead I., Muzny D., Hall N., Harper D., Lindsay R., Hauser H., James K., RA Quiles M., Buchrieser C., Wardroper A., Thangavelu M., Johnson D., RA Knights A., Loulseged H., Mungall K., Price C., Ma J., Quail M., RA Hernandez J., Rabbinowitsch E., Steffen D., Sanders M., Weinstock G., RA Sharp S., Just E., Shaulsky G., Simmonds M., Tivey A., White B., Walker D., RA Woodward J., Winckler T., Schleicher M., Rosenthal A., Rivero F., RA Chisholm R.L., Gibbs R., Loomis W.F., Platzer M., Kay R.R., Williams J., RA Dear P.H., Noegel A.A., Barrell B., Kuspa A.; RT ; RL Submitted (12-AUG-2009) to the EMBL/GenBank/DDBJ databases. RL dictyBase, Center for Genetic Medicine, Northwestern University, 303 E RL Chicago Ave, Chicago, IL 60611, USA XX DR EMBL-CON; CH709181. DR RFAM; RF00005; tRNA. XX CC Each chromosome was individually shotgun cloned and assembled. CC Since the rDNA genes are present on extrachromosomal elements, they CC are not included within this project but are present in GenBank CC Accession Numbers AY171065-AY171067. Similarly, the mitochondrial CC DNA is not included but is present in GenBank Accession Number CC AB000109. CC In August 2009 contig AAFI02000242 was suppressed because it was a CC contaminant, and contigs AAFI02000226 and AAFI02000244 were made CC secondary to contigs AAFI02000006 and AAFI02000262, respectively. CC Assembly Name: dicty_2.7 CC Genome Coverage: 8.3x CC Sequencing Technology: Sanger CC Annotation was updated on the contigs in August 2009. XX FH Key Location/Qualifiers FH FT source 1..2525 FT /organism="Dictyostelium discoideum AX4" FT /strain="AX4" FT /mol_type="genomic DNA" FT /db_xref="taxon:352472" FT gene 190..261 FT /gene="tRNA-Thr-AGU-1" FT /locus_tag="DDB_G0294667" FT tRNA 190..261 FT /gene="tRNA-Thr-AGU-1" FT /locus_tag="DDB_G0294667" FT /product="tRNA-Thr" FT gene complement(666..737) FT /gene="tRNA-Thr-AGU-2" FT /locus_tag="DDB_G0294669" FT tRNA complement(666..737) FT /gene="tRNA-Thr-AGU-2" FT /locus_tag="DDB_G0294669" FT /product="tRNA-Thr" FT gene <1458..>2293 FT /locus_tag="DDB_G0294380" FT /old_locus_tag="DDBDRAFT_0229815" FT /old_locus_tag="DDBDRAFT_0238760" FT /old_locus_tag="DDB_0229815" FT /old_locus_tag="DDB_0238760" FT mRNA join(<1458..1508,1621..1690,1788..1904,2019..>2293) FT /locus_tag="DDB_G0294380" FT /old_locus_tag="DDBDRAFT_0229815" FT /old_locus_tag="DDBDRAFT_0238760" FT /old_locus_tag="DDB_0229815" FT /old_locus_tag="DDB_0238760" FT /product="hypothetical protein" FT CDS join(1458..1508,1621..1690,1788..1904,2019..2293) FT /codon_start=1 FT /locus_tag="DDB_G0294380" FT /old_locus_tag="DDBDRAFT_0229815" FT /old_locus_tag="DDBDRAFT_0238760" FT /old_locus_tag="DDB_0229815" FT /old_locus_tag="DDB_0238760" FT /product="hypothetical protein" FT /db_xref="GOA:Q54AK6" FT /db_xref="HSSP:2F4W" FT /db_xref="InterPro:IPR000608" FT /db_xref="InterPro:IPR016135" FT /db_xref="UniProtKB/Swiss-Prot:Q54AK6" FT /protein_id="EAL60294.1" FT /translation="MSEHNSDIVHPPTKDCITRLKREFQEISKNPIENILVTPSPSNIL FT EWHYVILGASNTPYEGGVYYGQLIFKYNYPLSPPSILMTTPSGRFETQKRLCLSISDYH FT PESWSPSWSTSSILLGLLSFMSDNEVTAGSIVTTNDEKRILATKSMDFNKKNKTFCELF FT PYLAMDE" XX SQ Sequence 2525 BP; 953 A; 282 C; 274 G; 1016 T; 0 other; atttttcttt aaaaagttaa aaatctggaa attttctaat taacttggtt cccaggtttt 60 tttttttttt tttttttttt ttttaagtct tttttatatg aaaaatgaaa taatcaaaaa 120 aagagattgt tgttgttgtt tgtataaagc aaaatttggg atgctgttga aataaaaatt 180 ttcaaaaatg gctccttagc atagtggtat tgcgcttccc tagtaaggaa gaggtcatga 240 gttcgatcct cataggagcc ttttacattg aaaaacaaaa tagatcgaag gttcgattcc 300 ccataaaaac catattaaat aagaacctat tacccacctt ctaccaaaat aattaacttg 360 gaaactgctt ccaaatctta tctctttgaa ccaatttttt atttaacttt taatactggg 420 ctaacacact tttttaaaaa ttaaaaatcc attttttaaa aaaaaaaaaa aaaaattaaa 480 ttttaaattc acaaacaaaa ctattaattg tttatttcct taaacgtata atccgtaatt 540 aataaataaa aaactctgcc tattagacat cataatgcat aggtttcttc ccaacattga 600 ggggcagcgg ttaatcgttt atgcttaata gtgtgtttaa ttatattaaa aaaacatgta 660 ttaaaaggct cctatgagga tcgaactcat gacctcttcc ttactaggga agcgcaatac 720 cactatgcta aggagccatt tttgatattt ttttttataa cagaattcca agtttaaaat 780 aatttcaatt caaaaaaaaa acaaaaaaag tttaaaataa tttccaattg ccttatccat 840 ttcaaaaaaa aaagtttaaa atattttcgt caagagattt ctattgcaag ataatctgac 900 atattgggaa tttataaatc tataacatta ttatatggaa tgatttggat atttcaaaac 960 taattataac ccaagaacaa gaaaaatatt caatttaaat agctgttttt cctgaattta 1020 tacaatacaa taattttttt cctgaatcta ttgaatttat tttattttaa ttttgaaaat 1080 aaaattttgg atgaatattg ttggagaaat tattagattt tttttttttt tttttttttt 1140 tttttttttt tttttttttt tttttttttg gtatttttga gaattctcac aagtgtcagt 1200 tggtccaaaa aaaaaaaaaa aaaatacaat tttttttatt tttatttttt tttttttttt 1260 ttttttttaa tttttatttt ttaaagttgt attacatgaa attttaagaa taaactttat 1320 atgttttttt tttattctta aaattatata tttaaatata ttttttatgt atttttgttt 1380 tatttaaata acacaaattt ataaattgta atttatttta tattttttat ttatatattt 1440 tacaccacaa atacaaaatg tccgagcata atagtgatat agttcatcca ccaactaaag 1500 attgtattgt aagtaatatt tttttaaaaa tcactaaata tactatttta tttattttat 1560 taaccaaaat tttttaattt tttaattttt tttttttttt tttttttttt gtgaacacag 1620 acgagattaa aaagagaatt tcaagagatt agtaagaatc caattgaaaa tattttagtc 1680 acaccatctc gtacgtattt caacacatat aaatatttat atatatatat atattatata 1740 caaactgttt actaataata tattttttat atattatata tttttagcaa gtaatatttt 1800 agaatggcat tatgttattt tgggtgcatc taataccccc tacgaaggcg gtgtttatta 1860 tggtcaatta atatttaaat ataactatcc tctttcacca ccatgtaagc tatctctttt 1920 ttaaatttta ctattataaa atttataata tatatataaa ttaatactaa tttgaaaaaa 1980 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa acctatagca attttaatga caacaccaag 2040 tggtagattt gaaactcaaa agagattatg tttatcaatt tcagattatc atccagaaag 2100 ttggtcacca agttggagta catcttcaat tttacttgga ttattatcat ttatgtctga 2160 taatgaagtt acagcaggta gtatagttac aacaaatgat gaaaagagaa ttttagctac 2220 aaaatcaatg gattttaata agaagaataa aactttttgt gaattattcc cttatttagc 2280 gatggatgaa taataataaa gtataaaatg aaaaaaaatg aaaaaaaatg aaaaaaaaat 2340 atgaaaaaaa aaaaaagaat aattaaatcc gagaatcctc tccttttttt ttttttagcg 2400 atggtgaata gtaagttcag tctttattat ttcatcatga tttgatttat catcctttat 2460 atatatttac attaaaaaaa aaaggggttc tttagagtcg acaagcaggt tttcaagccg 2520 aagtg 2525 // |
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