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EBI DbfetchID AAFI02000259; SV 1; linear; genomic DNA; WGS; INV; 4068 BP. XX AC AAFI02000259; AAFI02000000; AAFI00000000; XX PR Project:201; XX DT 04-APR-2006 (Rel. 87, Created) DT 05-SEP-2009 (Rel. 102, Last updated, Version 8) XX DE Dictyostelium discoideum AX4 DDB0229810.02, whole genome shotgun sequence. XX KW WGS. XX OS Dictyostelium discoideum AX4 OC Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium. XX RN [1] RP 1-4068 RX DOI; 10.1038/nature03481 RX PUBMED; 15875012. RG The Dictyostelium discoideum Sequencing Consortium RA Eichinger L., Pachebat J.A., Glockner G., Rajandream M.A., Sucgang R., RA Berriman M., Song J., Olsen R., Szafranski K., Xu Q., Tunggal B., RA Kummerfeld S., Madera M., Konfortov B.A., Rivero F., Bankier A.T., RA Lehmann R., Hamlin N., Davies R., Gaudet P., Fey P., Pilcher K., Chen G., RA Saunders D., Sodergren E., Davis P., Kerhornou A., Nie X., Hall N., RA Anjard C., Hemphill L., Bason N., Farbrother P., Desany B., Just E., RA Morio T., Rost R., Churcher C., Cooper J., Haydock S., van Driessche N., RA Cronin A., Goodhead I., Muzny D., Mourier T., Pain A., Lu M., Harper D., RA Lindsay R., Hauser H., James K., Quiles M., Madan Babu M., Saito T., RA Buchrieser C., Wardroper A., Felder M., Thangavelu M., Johnson D., RA Knights A., Loulseged H., Mungall K., Oliver K., Price C., Quail M.A., RA Urushihara H., Hernandez J., Rabbinowitsch E., Steffen D., Sanders M., RA Ma J., Kohara Y., Sharp S., Simmonds M., Spiegler S., Tivey A., Sugano S., RA White B., Walker D., Woodward J., Winckler T., Tanaka Y., Shaulsky G., RA Schleicher M., Weinstock G., Rosenthal A., Cox E.C., Chisholm R.L., RA Gibbs R., Loomis W.F., Platzer M., Kay R.R., Williams J., Dear P.H., RA Noegel A.A., Barrell B., Kuspa A.; RT "The genome of the social amoeba Dictyostelium discoideum"; RL Nature 435(7038):43-57(2005). XX RN [2] RP 1-4068 RG The Dictyostelium discoideum Sequencing Consortium RA Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.-A., Sucgang R., RA Song J., Cox E.C., Tunggal B., Szafranski K., Konfortov B.A., RA Farbrother P., Bankier A.T., Lehmann R., Hamlin N., Xu Q., Davies R., RA Gaudet P., Fey P., Pilcher K., Chen G., Saunders D., Sodergren E., RA Davis P., Nie X., Kerhornou A., Hemphill L., Bason N., Berriman M., RA Desany B., Churcher C., Cooper J., van Driessche N., Cronin A., RA Goodhead I., Muzny D., Hall N., Harper D., Lindsay R., Hauser H., James K., RA Quiles M., Buchrieser C., Wardroper A., Thangavelu M., Johnson D., RA Knights A., Loulseged H., Mungall K., Price C., Ma J., Quail M., RA Hernandez J., Rabbinowitsch E., Steffen D., Sanders M., Weinstock G., RA Sharp S., Just E., Shaulsky G., Simmonds M., Tivey A., White B., Walker D., RA Woodward J., Winckler T., Schleicher M., Rosenthal A., Rivero F., RA Chisholm R.L., Gibbs R., Loomis W.F., Platzer M., Kay R.R., Williams J., RA Dear P.H., Noegel A.A., Barrell B., Kuspa A.; RT ; RL Submitted (08-OCT-2004) to the EMBL/GenBank/DDBJ databases. RL dictyBase, Center for Genetic Medicine, Northwestern University, 303 E RL Chicago Ave, Chicago, IL 60611, USA XX RN [3] RP 1-4068 RG The Dictyostelium discoideum Sequencing Consortium RA Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.-A., Sucgang R., RA Song J., Cox E.C., Tunggal B., Szafranski K., Konfortov B.A., RA Farbrother P., Bankier A.T., Lehmann R., Hamlin N., Xu Q., Davies R., RA Gaudet P., Fey P., Pilcher K., Chen G., Saunders D., Sodergren E., RA Davis P., Nie X., Kerhornou A., Hemphill L., Bason N., Berriman M., RA Desany B., Churcher C., Cooper J., van Driessche N., Cronin A., RA Goodhead I., Muzny D., Hall N., Harper D., Lindsay R., Hauser H., James K., RA Quiles M., Buchrieser C., Wardroper A., Thangavelu M., Johnson D., RA Knights A., Loulseged H., Mungall K., Price C., Ma J., Quail M., RA Hernandez J., Rabbinowitsch E., Steffen D., Sanders M., Weinstock G., RA Sharp S., Just E., Shaulsky G., Simmonds M., Tivey A., White B., Walker D., RA Woodward J., Winckler T., Schleicher M., Rosenthal A., Rivero F., RA Chisholm R.L., Gibbs R., Loomis W.F., Platzer M., Kay R.R., Williams J., RA Dear P.H., Noegel A.A., Barrell B., Kuspa A.; RT ; RL Submitted (22-JAN-2008) to the EMBL/GenBank/DDBJ databases. RL dictyBase, Center for Genetic Medicine, Northwestern University, 303 E RL Chicago Ave, Chicago, IL 60611, USA XX RN [4] RP 1-4068 RG The Dictyostelium discoideum Sequencing Consortium RA Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.-A., Sucgang R., RA Song J., Cox E.C., Tunggal B., Szafranski K., Konfortov B.A., RA Farbrother P., Bankier A.T., Lehmann R., Hamlin N., Xu Q., Davies R., RA Gaudet P., Fey P., Pilcher K., Chen G., Saunders D., Sodergren E., RA Davis P., Nie X., Kerhornou A., Hemphill L., Bason N., Berriman M., RA Desany B., Churcher C., Cooper J., van Driessche N., Cronin A., RA Goodhead I., Muzny D., Hall N., Harper D., Lindsay R., Hauser H., James K., RA Quiles M., Buchrieser C., Wardroper A., Thangavelu M., Johnson D., RA Knights A., Loulseged H., Mungall K., Price C., Ma J., Quail M., RA Hernandez J., Rabbinowitsch E., Steffen D., Sanders M., Weinstock G., RA Sharp S., Just E., Shaulsky G., Simmonds M., Tivey A., White B., Walker D., RA Woodward J., Winckler T., Schleicher M., Rosenthal A., Rivero F., RA Chisholm R.L., Gibbs R., Loomis W.F., Platzer M., Kay R.R., Williams J., RA Dear P.H., Noegel A.A., Barrell B., Kuspa A.; RT ; RL Submitted (12-AUG-2009) to the EMBL/GenBank/DDBJ databases. RL dictyBase, Center for Genetic Medicine, Northwestern University, 303 E RL Chicago Ave, Chicago, IL 60611, USA XX DR EMBL-CON; CH709180. XX CC Each chromosome was individually shotgun cloned and assembled. CC Since the rDNA genes are present on extrachromosomal elements, they CC are not included within this project but are present in GenBank CC Accession Numbers AY171065-AY171067. Similarly, the mitochondrial CC DNA is not included but is present in GenBank Accession Number CC AB000109. CC In August 2009 contig AAFI02000242 was suppressed because it was a CC contaminant, and contigs AAFI02000226 and AAFI02000244 were made CC secondary to contigs AAFI02000006 and AAFI02000262, respectively. CC Assembly Name: dicty_2.7 CC Genome Coverage: 8.3x CC Sequencing Technology: Sanger CC Annotation was updated on the contigs in August 2009. XX FH Key Location/Qualifiers FH FT source 1..4068 FT /organism="Dictyostelium discoideum AX4" FT /strain="AX4" FT /mol_type="genomic DNA" FT /db_xref="taxon:352472" FT gene complement(<406..>1432) FT /gene="fcpA" FT /locus_tag="DDB_G0294376" FT /old_locus_tag="DDBDRAFT_0229811" FT /old_locus_tag="DDBDRAFT_0229894" FT /old_locus_tag="DDB_0229811" FT /old_locus_tag="DDB_0229894" FT mRNA complement(join(<406..415,522..>1432)) FT /gene="fcpA" FT /locus_tag="DDB_G0294376" FT /old_locus_tag="DDBDRAFT_0229811" FT /old_locus_tag="DDBDRAFT_0229894" FT /old_locus_tag="DDB_0229811" FT /old_locus_tag="DDB_0229894" FT /product="hypothetical protein" FT CDS complement(join(406..415,522..1432)) FT /codon_start=1 FT /gene="fcpA" FT /locus_tag="DDB_G0294376" FT /old_locus_tag="DDBDRAFT_0229811" FT /old_locus_tag="DDBDRAFT_0229894" FT /old_locus_tag="DDB_0229811" FT /old_locus_tag="DDB_0229894" FT /product="hypothetical protein" FT /db_xref="GOA:Q9XYL0" FT /db_xref="InterPro:IPR004274" FT /db_xref="UniProtKB/Swiss-Prot:Q9XYL0" FT /protein_id="EAL60295.1" FT /translation="MNSSPITQVSNPNDSLNHSSTNLIPSSHNSLNNYPQKSVKGNRKK FT KGSIINKLFCCFVPSNDQNNGNNINTDNGASNNDKLQQQKQYNQQQQQQYNQHQQQQQQ FT QQQQQQYINKDSSQQNGEIPLMVPMIPRHVGLKTLVLDLDETLVHSSFKPVHNPDFIVP FT VEIEGTIHQVYVVKRPFVDDFLRAIAEKFEIVVFTASLAKYADPVLDFLDTGRVIHYRL FT FRESCHNHKGNYVKDLSRLGRDLKSTIIVDNSPSSYLFHPENAIPIDSWFDDKDDRELL FT DLLPLLDDLIKVEDVRLVLDESRNN" FT gene <3182..>3334 FT /locus_tag="DDB_G0294378" FT /old_locus_tag="DDBDRAFT_0229812" FT /old_locus_tag="DDB_0229812" FT mRNA <3182..>3334 FT /locus_tag="DDB_G0294378" FT /old_locus_tag="DDBDRAFT_0229812" FT /old_locus_tag="DDB_0229812" FT /product="hypothetical protein" FT CDS 3182..3334 FT /codon_start=1 FT /locus_tag="DDB_G0294378" FT /old_locus_tag="DDBDRAFT_0229812" FT /old_locus_tag="DDB_0229812" FT /product="hypothetical protein" FT /db_xref="UniProtKB/Swiss-Prot:Q54AK7" FT /protein_id="EAL60296.1" FT /translation="MVEKKKKKKFYKQNNKENKNNNNNNNNNNNNNNNNNNNNNNNNNN FT KNTKK" XX SQ Sequence 4068 BP; 1650 A; 302 C; 397 G; 1719 T; 0 other; tttttttttt tttttttttt tttttttttt tttttttttt tttttttttt atttaaataa 60 atatttattt atattgatat cattcaaaca aatgaatgaa taattattac attggctttt 120 aaaaattttt attattaata ttatcattat tattatttat tttatttttg ttattatcac 180 tatacaattg ttaattatta cttttttttt tttgtttaag tattttttat tttttttatt 240 tttttttttt taataataca tatttattgt atgtgttgaa taaatatttt ttataaatat 300 ttttgatatt attattgtta tgtttttttt ttttttgttt ttattttttt tttcttttcc 360 agtttttttt tttgttgata ttaatattat atctatataa tataattaat tatttctatt 420 tgaaagaaaa aaaaaataat aaatattaat aaatattaaa tataaatttt aatttttaaa 480 aaaaataaaa ataaaaaata aaaaaaaatt ttaaaactta ccttgattca tctaaaacta 540 atcttacatc ttcaacttta attaaatcat ctaataaagg taataaatcc aataattctc 600 tatcatcttt atcatcgaac caagaatcaa tcggaattgc attttcagga tggaaaagat 660 aagaggatgg tgaattatct acaatgatcg ttgattttag atctctacct aatctactta 720 gatctttaac gtagtttcct ttatggttat gacaagactc tctaaacaat ctatagtgta 780 tcactctacc tgtatctaaa aagtccaata cggggtctgc atatttagct aaagaggcgg 840 tgaatacaac aatttcaaac ttctctgcga ttgctcttaa aaaatcatct acaaatggtc 900 tctttaccac ataaacctga tgtattgtac cttcaatctc tacgggaaca atgaaatctg 960 gattatgtac tggtttaaat gatgaatgta ctaatgtttc atctaaatct aataccaatg 1020 ttttaagtcc aacatgtctt ggtatcattg gtaccattag tggtatttca ccattttgtt 1080 gactactatc tttatttata tattgttgtt gttgttgttg ttgttgttgt tgttgttgat 1140 gttgattgta ttgttgttgt tgttgttgat tatattgttt ttgttgttgt aatttatcat 1200 tattacttgc accattatcg gtatttatat tattaccatt gttttgatca tttgatggaa 1260 cgaaacaaca aaataattta tttataatac ttcctttctt ttttctattt cctttaacag 1320 atttttgtgg ataattattt aaactattat gtgatgatgg tattaaattc gtactggaat 1380 gatttaatga atcatttgga tttgaaactt gagttattgg tgatgaattc atttatataa 1440 aaaaaaaaaa aattgattaa agattttttt tttttttttt ttctttccaa aagaaaattt 1500 ctatattttt tttttttttg ttttttcttt gtttactact aaaatttact attacaatta 1560 attatttgtg aggttttttt tttttttttt tttttttttt ttttactata ttgatttttt 1620 ttttttaaaa aataaaaaaa aaataaataa taaaaaaaat aaaaaaataa aattaaatgg 1680 tattaatata aaaataatat taattttaaa atgataaagt gttgtgtggt tgaattgaaa 1740 attgagtggt tggtgtggtg gggtttgtga gtgggcagtt ataataaaaa aaaaaaaaaa 1800 aaaaaaaaaa ctattttatg tatacaaata aaaggtgatt gcgctttgta aaaaaaaaaa 1860 aaaaacaaaa agatagttga attgcaaata gtagttaatt tataaaaaat aaatgtataa 1920 attttacaaa aaaaaaaata aaaaataaaa taaaaaaaaa atagaaaagg attataaatt 1980 ggaaataaaa atcaatcttt atgatgcata gggaaaaaaa ataaaaaaat tttgaagttg 2040 ttatctaata aatttttttt tttttttttg taatttattt gtattttcac gaaataaggt 2100 ggtttaggtg tttttttttt ttttttttgg atgattaaaa tttttttaaa atatttacat 2160 aatgttttta tggtcaataa ataaataaat aaataaataa ataaataaat aaataaataa 2220 ataaataaat taattaatga atgaaagaat gaataaataa ataaataaaa ttttttgaaa 2280 aaaaaaaaga aaaaaaaaaa aggatatgaa attttattga tgaatgtgaa ataaatattt 2340 taattaaatg aataaaaaaa aataaaataa aaaaaaatta aactaaacta atcacattgg 2400 gtgtattttt ttttttttct tttttttttt tttttttttt ttttgtgggg gtaaaaatat 2460 ttagtgtttg gttatggcag tttttttttt tatttgtatg atgtgtgtgt gaatccaaat 2520 ttacatgtgg atatccaaaa aaaaaaaaaa aaaaaaattt aacacactcg tgcttacaat 2580 tgttttattt ttattattat tattattatt attattatta ttattattat ttttattatt 2640 attatttatt ttataatata attatcttat tctcactttt aaatatttaa tttttatttt 2700 atttcatttt atttttttat ttttttttta ttataaaaac tttcaaatca cacaagaaat 2760 gggtacaaac actaaatatg gatattttaa tgagtggttg tgagtttttt taaaaaaaaa 2820 aaaaaaaaaa aaatcaattt ttagatcaaa cacaccaaca cccctttgta atataaaata 2880 aaataaatta aataaaaaaa aattattgtt caaatcacta ttaagtttat ataattagag 2940 ttaaatcgtt attgttattt ttaaatttta ttctttttta tttttaaaaa taacaactac 3000 taataataat aataataata aaaataataa taattattat gatttgatcg tatgatgtgt 3060 gagtgtgtgt atgtgggaaa ttatgtgtat ttattgttta tgataactga taatatgatg 3120 atgataccat taatcattta ttaatggcga aagggaaatt taataattga tgatggtaaa 3180 aatggttgaa aaaaaaaaaa aaaaaaagtt ttataaacaa aataacaaag aaaataaaaa 3240 taataataat aataataata ataataataa taataataat aataataata ataataataa 3300 taataataat aataataaaa atacaaaaaa ataaaatata tatacattac attcaattgg 3360 aatgatagta tttttgaata taattattaa ttttgttttc caatattgat gattgaactc 3420 attggaagat ttccagtaag caaaaaaata aaaaataaaa aataaaaaaa aaaaaacaaa 3480 acaataaaaa tattaatata aataataaat aataaatata aaaaaaaaaa aagtttgatt 3540 taatttttta taacaacaat aaaaaagaga taaataaatt aaaaatacaa aaaaaattaa 3600 aaaataatta aaaaaaaaat aaaaaaaatt attattattt agctgaattc acctaatgga 3660 tttttttttt tttttttttt ttgttgttat tgtttattgt tatgttgtta tgtttttgtc 3720 ttgtagaata tattatcagt ttatccagtc gaaaaatggg tgtgggtgac atgcatgtta 3780 tattaaaaat tatcaaaaaa ataatataaa aaaaaaaaaa aaaaatcttt attttatttt 3840 taacacaaaa aacaaaccct aaattttttt acaaaattat gataatgcaa acaaatcctc 3900 tcaccttttg tttttttttt taattttttt tttttttttt ttttttcttt tgtattatta 3960 taattattga atgctatgat ttaaaaaaaa aaaaaaaaaa accaaaaaac caaaccaaac 4020 caaaccaaaa caaaccaaac caaaccaaac caaaccaaac caaaccaa 4068 // |
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