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EBI DbfetchID AAFI02000113; SV 1; linear; genomic DNA; WGS; INV; 3830 BP. XX AC AAFI02000113; AAFI02000000; AAFI00000000; XX PR Project:201; XX DT 04-APR-2006 (Rel. 87, Created) DT 05-SEP-2009 (Rel. 102, Last updated, Version 8) XX DE Dictyostelium discoideum AX4 chromosome 5 DDB0232724.02, whole genome DE shotgun sequence. XX KW WGS. XX OS Dictyostelium discoideum AX4 OC Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium. XX RN [1] RP 1-3830 RX DOI; 10.1038/nature03481 RX PUBMED; 15875012. RG The Dictyostelium discoideum Sequencing Consortium RA Eichinger L., Pachebat J.A., Glockner G., Rajandream M.A., Sucgang R., RA Berriman M., Song J., Olsen R., Szafranski K., Xu Q., Tunggal B., RA Kummerfeld S., Madera M., Konfortov B.A., Rivero F., Bankier A.T., RA Lehmann R., Hamlin N., Davies R., Gaudet P., Fey P., Pilcher K., Chen G., RA Saunders D., Sodergren E., Davis P., Kerhornou A., Nie X., Hall N., RA Anjard C., Hemphill L., Bason N., Farbrother P., Desany B., Just E., RA Morio T., Rost R., Churcher C., Cooper J., Haydock S., van Driessche N., RA Cronin A., Goodhead I., Muzny D., Mourier T., Pain A., Lu M., Harper D., RA Lindsay R., Hauser H., James K., Quiles M., Madan Babu M., Saito T., RA Buchrieser C., Wardroper A., Felder M., Thangavelu M., Johnson D., RA Knights A., Loulseged H., Mungall K., Oliver K., Price C., Quail M.A., RA Urushihara H., Hernandez J., Rabbinowitsch E., Steffen D., Sanders M., RA Ma J., Kohara Y., Sharp S., Simmonds M., Spiegler S., Tivey A., Sugano S., RA White B., Walker D., Woodward J., Winckler T., Tanaka Y., Shaulsky G., RA Schleicher M., Weinstock G., Rosenthal A., Cox E.C., Chisholm R.L., RA Gibbs R., Loomis W.F., Platzer M., Kay R.R., Williams J., Dear P.H., RA Noegel A.A., Barrell B., Kuspa A.; RT "The genome of the social amoeba Dictyostelium discoideum"; RL Nature 435(7038):43-57(2005). XX RN [2] RP 1-3830 RG The Dictyostelium discoideum Sequencing Consortium RA Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.-A., Sucgang R., RA Song J., Cox E.C., Tunggal B., Szafranski K., Konfortov B.A., RA Farbrother P., Bankier A.T., Lehmann R., Hamlin N., Xu Q., Davies R., RA Gaudet P., Fey P., Pilcher K., Chen G., Saunders D., Sodergren E., RA Davis P., Nie X., Kerhornou A., Hemphill L., Bason N., Berriman M., RA Desany B., Churcher C., Cooper J., van Driessche N., Cronin A., RA Goodhead I., Muzny D., Hall N., Harper D., Lindsay R., Hauser H., James K., RA Quiles M., Buchrieser C., Wardroper A., Thangavelu M., Johnson D., RA Knights A., Loulseged H., Mungall K., Price C., Ma J., Quail M., RA Hernandez J., Rabbinowitsch E., Steffen D., Sanders M., Weinstock G., RA Sharp S., Just E., Shaulsky G., Simmonds M., Tivey A., White B., Walker D., RA Woodward J., Winckler T., Schleicher M., Rosenthal A., Rivero F., RA Chisholm R.L., Gibbs R., Loomis W.F., Platzer M., Kay R.R., Williams J., RA Dear P.H., Noegel A.A., Barrell B., Kuspa A.; RT ; RL Submitted (08-OCT-2004) to the EMBL/GenBank/DDBJ databases. RL dictyBase, Center for Genetic Medicine, Northwestern University, 303 E RL Chicago Ave, Chicago, IL 60611, USA XX RN [3] RP 1-3830 RG The Dictyostelium discoideum Sequencing Consortium RA Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.-A., Sucgang R., RA Song J., Cox E.C., Tunggal B., Szafranski K., Konfortov B.A., RA Farbrother P., Bankier A.T., Lehmann R., Hamlin N., Xu Q., Davies R., RA Gaudet P., Fey P., Pilcher K., Chen G., Saunders D., Sodergren E., RA Davis P., Nie X., Kerhornou A., Hemphill L., Bason N., Berriman M., RA Desany B., Churcher C., Cooper J., van Driessche N., Cronin A., RA Goodhead I., Muzny D., Hall N., Harper D., Lindsay R., Hauser H., James K., RA Quiles M., Buchrieser C., Wardroper A., Thangavelu M., Johnson D., RA Knights A., Loulseged H., Mungall K., Price C., Ma J., Quail M., RA Hernandez J., Rabbinowitsch E., Steffen D., Sanders M., Weinstock G., RA Sharp S., Just E., Shaulsky G., Simmonds M., Tivey A., White B., Walker D., RA Woodward J., Winckler T., Schleicher M., Rosenthal A., Rivero F., RA Chisholm R.L., Gibbs R., Loomis W.F., Platzer M., Kay R.R., Williams J., RA Dear P.H., Noegel A.A., Barrell B., Kuspa A.; RT ; RL Submitted (22-JAN-2008) to the EMBL/GenBank/DDBJ databases. RL dictyBase, Center for Genetic Medicine, Northwestern University, 303 E RL Chicago Ave, Chicago, IL 60611, USA XX RN [4] RP 1-3830 RG The Dictyostelium discoideum Sequencing Consortium RA Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.-A., Sucgang R., RA Song J., Cox E.C., Tunggal B., Szafranski K., Konfortov B.A., RA Farbrother P., Bankier A.T., Lehmann R., Hamlin N., Xu Q., Davies R., RA Gaudet P., Fey P., Pilcher K., Chen G., Saunders D., Sodergren E., RA Davis P., Nie X., Kerhornou A., Hemphill L., Bason N., Berriman M., RA Desany B., Churcher C., Cooper J., van Driessche N., Cronin A., RA Goodhead I., Muzny D., Hall N., Harper D., Lindsay R., Hauser H., James K., RA Quiles M., Buchrieser C., Wardroper A., Thangavelu M., Johnson D., RA Knights A., Loulseged H., Mungall K., Price C., Ma J., Quail M., RA Hernandez J., Rabbinowitsch E., Steffen D., Sanders M., Weinstock G., RA Sharp S., Just E., Shaulsky G., Simmonds M., Tivey A., White B., Walker D., RA Woodward J., Winckler T., Schleicher M., Rosenthal A., Rivero F., RA Chisholm R.L., Gibbs R., Loomis W.F., Platzer M., Kay R.R., Williams J., RA Dear P.H., Noegel A.A., Barrell B., Kuspa A.; RT ; RL Submitted (12-AUG-2009) to the EMBL/GenBank/DDBJ databases. RL dictyBase, Center for Genetic Medicine, Northwestern University, 303 E RL Chicago Ave, Chicago, IL 60611, USA XX DR EMBL-CON; CM000154. XX CC Each chromosome was individually shotgun cloned and assembled. CC Since the rDNA genes are present on extrachromosomal elements, they CC are not included within this project but are present in GenBank CC Accession Numbers AY171065-AY171067. Similarly, the mitochondrial CC DNA is not included but is present in GenBank Accession Number CC AB000109. CC In August 2009 contig AAFI02000242 was suppressed because it was a CC contaminant, and contigs AAFI02000226 and AAFI02000244 were made CC secondary to contigs AAFI02000006 and AAFI02000262, respectively. CC Assembly Name: dicty_2.7 CC Genome Coverage: 8.3x CC Sequencing Technology: Sanger CC Annotation was updated on the contigs in August 2009. XX FH Key Location/Qualifiers FH FT source 1..3830 FT /organism="Dictyostelium discoideum AX4" FT /chromosome="5" FT /strain="AX4" FT /mol_type="genomic DNA" FT /db_xref="taxon:352472" FT gene <411..>1401 FT /locus_tag="DDB_G0288507" FT /old_locus_tag="DDBDRAFT_0187966" FT /old_locus_tag="DDBDRAFT_0267113" FT /old_locus_tag="DDB_0187966" FT /old_locus_tag="DDB_0267113" FT mRNA join(<411..720,812..>1401) FT /locus_tag="DDB_G0288507" FT /old_locus_tag="DDBDRAFT_0187966" FT /old_locus_tag="DDBDRAFT_0267113" FT /old_locus_tag="DDB_0187966" FT /old_locus_tag="DDB_0267113" FT /product="arylamine N-acetyltransferase family protein" FT CDS join(411..720,812..1401) FT /codon_start=1 FT /locus_tag="DDB_G0288507" FT /old_locus_tag="DDBDRAFT_0187966" FT /old_locus_tag="DDBDRAFT_0267113" FT /old_locus_tag="DDB_0187966" FT /old_locus_tag="DDB_0267113" FT /product="arylamine N-acetyltransferase family protein" FT /db_xref="GOA:Q54IU8" FT /db_xref="InterPro:IPR001447" FT /db_xref="UniProtKB/Swiss-Prot:Q54IU8" FT /protein_id="EAL63187.1" FT /translation="MEPNPIFSEFQLEFFKRIKMQPKSIETLNDVSEVMSGCAQIFSFE FT NLDVVANTTEPLNREVIIQQLVNNKQGGLCYKINSVFYYFIKSFGFNIYQVRCCVENQE FT THDCWQINGAHIINIIEYENKKYLADVAFGCNLSYEPIPFSEEIIESCTGLYRIRKVDN FT IIRDIKYTYLLEFKKPDSFSPESARLWTNGYAFDPLVKAIDIDENDKIDSHATQIQQLI FT IDDPTKEFSVKPLATKVVNNESIATLTSNSFTLTNCKTGEKTKVTFDINNEIKQLEQFN FT QHLISIFNLPPLKFLPKI" FT gene <1746..>2765 FT /locus_tag="DDB_G0288509" FT /old_locus_tag="DDBDRAFT_0187967" FT /old_locus_tag="DDBDRAFT_0267114" FT /old_locus_tag="DDB_0187967" FT /old_locus_tag="DDB_0267114" FT mRNA join(<1746..2055,2155..>2765) FT /locus_tag="DDB_G0288509" FT /old_locus_tag="DDBDRAFT_0187967" FT /old_locus_tag="DDBDRAFT_0267114" FT /old_locus_tag="DDB_0187967" FT /old_locus_tag="DDB_0267114" FT /product="arylamine N-acetyltransferase family protein" FT CDS join(1746..2055,2155..2765) FT /codon_start=1 FT /locus_tag="DDB_G0288509" FT /old_locus_tag="DDBDRAFT_0187967" FT /old_locus_tag="DDBDRAFT_0267114" FT /old_locus_tag="DDB_0187967" FT /old_locus_tag="DDB_0267114" FT /product="arylamine N-acetyltransferase family protein" FT /db_xref="GOA:Q54IU7" FT /db_xref="InterPro:IPR001447" FT /db_xref="UniProtKB/Swiss-Prot:Q54IU7" FT /protein_id="EAL63188.1" FT /translation="MEAISIFSDYQLQFFKRIGMKPKPIETLDDVSDVMKACSNVFSFE FT NLDIVSNSCEPLNKDVLIKQVICNNQGGLCYKINTLLYHFLLEFGFKIHIIRGSVENQE FT THSDWNIPTGHMINIINFENRLYVVDVAFGCNLSLRPIPITDDGSEVVESCTGLYRVRK FT VENCVSGKYNYTHILEHRKLDSFLIESGKTWVTGYAFDPLLIVDNNNNNEKTTHQTLVQ FT QLVIDDPTKEFSTKPLATKIVNDGSSFSIATLTANSFTLTDCKTGQKTKTNFDNDKSSF FT EQFNQHLISIFNLPPLKTIPPIFLN" XX SQ Sequence 3830 BP; 1641 A; 345 C; 387 G; 1457 T; 0 other; taactttttt tattactttt tgggtcacta tctttttttg gtcaaaaagc aagatttttt 60 ttatgttaca atcttttttt ggtaataact ttttttatgt aaaataaaaa ataaaaaaaa 120 aaaatacccc aaaaaagggt cggaatagaa ggagtttaaa aacattgctg acatcattga 180 ttgacggtta aaaaataaaa ttaaaaaaaa aaaaaaaaat ttaatgtaaa attaacaaaa 240 atatgattcc gaactttttt gggtaattcc gagctttggt ataagatttt ttcgaattct 300 tattattatt ttttttttat ttaacttttt tttttttttt ttttttttca tattttattt 360 tagtctaata aaagtttaaa aacaaatata tatatataaa caaataaaaa atggaaccaa 420 atccaatatt tagcgaattt caattagaat tttttaaaag aattaaaatg caaccaaaat 480 caatagaaac attaaatgat gtttcagaag tgatgagtgg ttgtgcacaa attttttcat 540 ttgaaaattt agatgtagtt gcaaatacaa ctgaaccttt aaatagagaa gtgataattc 600 aacaacttgt aaataataaa caaggtggat tatgttataa aattaattct gtattttatt 660 attttattaa aagttttggt tttaatattt atcaagttag atgttgtgtt gaaaatcaag 720 gtatgttttt ttggttaaaa aaaaaaagtt gaaaaaaaaa aaaaaaattt tattaacaaa 780 tttttaaaaa aataaaaaat aaaaaataaa gaaacacatg attgttggca aattaatggt 840 gcacatatta taaatataat tgaatatgaa aataaaaaat atttagcaga cgttgcattt 900 ggatgtaatt tatcatatga accaattcca ttttcagaag agattattga atcatgtaca 960 ggtttatatc gtattcgtaa agttgataat attattaggg atattaaata tacatatctt 1020 ttagaattta aaaaaccaga ttcattttca ccagaatctg ctcgtttatg gaccaatggt 1080 tatgcatttg atccattggt aaaagcaatt gatattgatg aaaatgataa aattgatagt 1140 catgcaactc aaattcaaca attaattatt gatgatccaa caaaagaatt tagtgttaaa 1200 cctttagcta caaaagttgt aaacaatgaa tcaatagcaa ctttaacctc aaattcattc 1260 actttaacaa attgtaaaac tggtgaaaaa acaaaagtta cctttgatat caataatgaa 1320 atcaaacaat tagaacaatt taatcaacat ttaatttcaa tttttaattt accaccttta 1380 aaatttttac caaaaattta aaaataatat gaaaataaaa aaataaaaaa aaaataaaaa 1440 aaaaataaaa aaaataaaaa aaaaaaaaca attgattcgt gtctgaaagt gtggatttaa 1500 aaaagaatct aaattttaat tcaggaatct tcttttttta gaaaatgttt gtgcaataat 1560 ttattttttt ttttattttt ttaatttttt tttttttatt tttaatttta aaagaaaaaa 1620 aaaaaaaaaa aaacaaaaaa aaataaaaaa aataaaaaaa ccatattttt tttcaacctt 1680 ttacaacaga tatatctaaa aaaaaaaaaa aaataaaaaa aaataaaaaa aataaaaaaa 1740 aaaaaatgga agcaatttca atattttcag attatcaatt acaatttttt aaaagaattg 1800 gaatgaaacc aaaaccaatt gaaacattag atgatgtttc agatgtaatg aaagcatgct 1860 caaatgtatt ttcttttgag aatttagata ttgtatctaa ttcatgtgaa cctttaaata 1920 aggatgtatt aataaaacaa gtaatatgta ataatcaagg tggactatgt tataaaatca 1980 acactttatt atatcatttt cttttagaat ttggtttcaa aattcatata attagaggta 2040 gtgttgaaaa tcaaggtatg tgaataaaaa ttaattttta aaaatatttt tttttttttt 2100 tttttttttt tttttttttt ttattaataa ttgtttacat taataatttt atagaaactc 2160 attcagattg gaatattcca actggtcata tgattaatat aattaatttt gaaaataggt 2220 tatatgttgt tgatgttgca tttggatgta atctttcatt gagaccaatt ccaattacag 2280 atgatggtag tgaagtagtt gaatcctgca caggtttata tcgtgttcgt aaagttgaaa 2340 attgtgtttc tggaaaatat aattatacac atattctaga acataggaaa ttggatagtt 2400 ttttaattga atctggaaag acctgggtga caggttatgc atttgatcca ttattaattg 2460 ttgataataa taataataat gaaaaaacaa cccaccaaac acttgtacaa caattagtaa 2520 ttgatgatcc aactaaagaa tttagtacta aacctttggc tactaaaatt gtaaatgatg 2580 gttcatcatt ctctattgca actttaactg caaattcatt cacacttaca gattgtaaaa 2640 ctggtcaaaa aactaaaacc aattttgata atgataaatc atcatttgaa caatttaatc 2700 aacatttaat ttcaattttt aatttaccac ctttaaaaac aattccgcca atatttttaa 2760 attaatcaga aaaaataata aaaaataaaa ataaaaataa tacttttatt ttttttattt 2820 ttttttttaa aaaaatttta attttttatt tatttttttt tttttttttt atgtcgacta 2880 aacgatacat ataaaaaaga caaccggaaa tctttgggcg ataatttatt ggtgattgtc 2940 tttgggcgaa atttaattga aaaatgtttt ttgttttttt tttttttttt tatatttttt 3000 tttttttttt tttttaaaat aaaattttta ttactgttat tttttttttt tattttattt 3060 tatttttttt ataaaatata tactaatcta aatttagtac tttataggat cttttataac 3120 aatttctttt ttttatacaa ataaacgaaa catataaagg tagctcaaaa aaattaaaaa 3180 caaataattg gaaattaata ataaaaaaaa aaaaaaaccc acacacaagc ctttggtatc 3240 atcctttaac acaaaaatct aatcaaaaaa aaaataaaaa aaaataaaaa aataaaaaat 3300 aaaagaaaag aaaaaaaatg aaaaataaaa aacacaaagg tttaattcaa accaataacg 3360 aacacacaac acaaaattaa cactaccacc attattctca taacacacaa cgatcatggg 3420 ttaattattt ttattattat tgttggttta caaaataatt aaaaaaaaaa aaaaaaaaaa 3480 aagaaaaaaa aaaaaaaaaa aaagtgattg tgagagatta ttaatttttt aaatattttg 3540 tgtgtgtttt tcaaaacaat aataataaaa aatcaataaa attaaaaaat taaaaaatta 3600 aatataataa taataataat atcagctaca aaaaaaaaaa aaaaaaaaaa aaaaaaatac 3660 aaaaagagag tgtgcagggg taaaataatt ttaaatattt tgtttttagt taattattat 3720 tatttttttt cttttatttg tttattttta attttatttt attttttgtt tttttgtttt 3780 taaaatattt tttttttatt tatttttttt taaaaatttt atattttttt 3830 // |
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