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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAQ15398; SV 1; linear; genomic DNA; STD; VRT; 1680 BP.
XX
PA   CR762497.17
XX
DE   Danio rerio (zebrafish) novel protein simiar to human and murine
DE   UDP-N-acetyl-alpha-D-galactosamine:polypeptide
DE   N-acetylgalactosaminyltransferase 2 (GalNAc-T2) (GALNT2)
XX
OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
OX   NCBI_TaxID=7955;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1680
FT                   /organism="Danio rerio"
FT                   /chromosome="13"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="DanioKey"
FT                   /clone="DKEY-162B3"
FT   CDS             complement(join(CR762497.17:12669..12824,
FT                   CR762497.17:14316..14435,CR762497.17:16015..16141,
FT                   CR762497.17:17257..17340,CR762497.17:17518..17610,
FT                   CR762497.17:19597..19723,CR762497.17:26149..26252,
FT                   CR762497.17:28763..28850,CR762497.17:33029..33116,
FT                   CR762497.17:38195..38316,CR762497.17:41157..41222,
FT                   CR762497.17:45904..45971,CR762497.17:46142..46240,
FT                   CR762497.17:67492..67645,CR762497.17:81790..81877,
FT                   CR762497.17:160368..160463))
FT                   /locus_tag="DKEY-162B3.1-001"
FT                   /standard_name="OTTDARP00000018538"
FT                   /product="novel protein simiar to human and murine
FT                   UDP-N-acetyl-alpha-D-galactosamine:polypeptide
FT                   N-acetylgalactosaminyltransferase 2 (GalNAc-T2) (GALNT2)"
FT                   /note="match: proteins: Sw:Q10471 Sw:Q6PB93 Tr:Q3UA32
FT                   Tr:Q3UM52 Tr:Q4RKS0"
FT                   /db_xref="GOA:B0V0U4"
FT                   /db_xref="InterPro:IPR001173"
FT                   /db_xref="UniProtKB/TrEMBL:B0V0U4"
FT                   /db_xref="ZFIN:ZDB-GENE-041111-110"
FT                   /protein_id="CAQ15398.1"
FT                   /translation="MRRKSRMYLCFAVLWVLGIAYYFYSGTTLSRKDDWSGINSNRIQT
FT                   HSNADDKDHSLESLPLGKVRWQDYDQDLYVGATVVRPGQDPYARNKFNQVESDKLRMDR
FT                   NIPDTRHDHCRHKQWRTDLPASSVVITFHNEARSALLRTVISVLKKSPPHLVKEIILVD
FT                   DYSDNPEDGALLGKIEKVRVLRNDRREGLMRSRVRGADAATASVLTFLDSHCECNEHWL
FT                   EPLLERVAEDKTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTLEQRRAR
FT                   QGNPIAPIKTPMIAGGLFVMDKDYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEII
FT                   PCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDDFKNFYYAAVPSARNVPYGNI
FT                   QSRLEMKKRLGCKPFKWYLENVYPELRVPDHQDIAFGALQQGQNCLDTLGHFADGVVGV
FT                   YECHNAGGNQEWALTKDKSVKHMDLCLTVVDRTAGSQIKLQGCRENDTRQKWEQIDNNT
FT                   KLRHVGSNLCLDSRSARSGGLTVEVCSPSLTQQWKFTLNLQP"
XX
SQ   Sequence 1680 BP; 439 A; 385 C; 487 G; 369 T; 0 other; 2257128703 CRC32;
     atgcgcagga aatctaggat gtatctatgt ttcgctgtgc tttgggttct gggcatagct        60
     tattatttct attcgggaac aacgctgagt cgaaaggatg actggagtgg cattaattca       120
     aaccgaattc aaacacacag caatgcagat gacaaagacc acagccttga aagtcttcct       180
     ctagggaagg ttcggtggca ggactatgac caggatctat atgttggagc gactgtggtg       240
     cgtccagggc aggatcccta cgccagaaac aagttcaacc aggtggagag tgacaaactc       300
     cgaatggacc gcaacatccc ggacactaga catgaccatt gtcgtcataa gcagtggaga       360
     acagatctac ctgcatccag tgtggtcatt actttccaca atgaggcccg ttcagccctg       420
     ctgcgcactg tcatcagtgt gctgaagaag agtcctcctc atctggtcaa ggagatcatc       480
     ttggtggacg actacagtga caaccctgaa gacggtgcct tacttgggaa aattgagaaa       540
     gtcagagtcc tgaggaacga ccgtcgagag ggcttgatgc gatctcgagt gcgaggggcg       600
     gatgcagcca cggccagtgt actgaccttc ctcgacagcc actgcgagtg taatgaacac       660
     tggttggagc ccctgctaga aagggttgct gaggataaga ctcgggttgt gtcgcctatc       720
     atagatgtca ttaatatgga caatttccag tatgtggggg catctgcaga tcttaaagga       780
     ggttttgatt ggaatctggt ttttaaatgg gactacatga ccctggaaca aagacgagct       840
     cgacaaggaa accccatcgc tcctatcaag actcctatga ttgccggtgg tctgtttgta       900
     atggacaagg actactttga ggagctgggc aagtacgaca tgatgatgga cgtgtggggc       960
     ggtgagaatc tcgagatctc cttcagagtg tggcagtgtg gaggcagtct ggagatcatt      1020
     ccctgcagtc gagtgggtca cgtattcagg aaacaacatc catacacttt tcctggaggc      1080
     agcggcactg tctttgccag aaacacgagg cgagcggcag aagtttggat ggatgacttc      1140
     aagaatttct actacgccgc tgtgccttca gcccgtaatg tgccgtatgg aaacattcag      1200
     agcaggctgg aaatgaagaa gagattgggc tgcaaaccat ttaaatggta cctggagaac      1260
     gtctatcctg agctgcgagt gccggatcat caggacattg catttggagc tcttcagcag      1320
     ggtcaaaact gtctggacac actgggccat tttgcagatg gtgtggtggg ggtttacgag      1380
     tgccacaacg ctgggggcaa tcaggaatgg gccctgacca aagacaaatc ggtgaagcac      1440
     atggacctgt gcctgacagt ggtggaccgc acagctggct cacagatcaa gcttcagggc      1500
     tgcagggaga acgacaccag acagaaatgg gaacagatcg acaacaacac caagctacgt      1560
     cacgtgggca gcaacctgtg tctggacagc cggagcgcaa ggagcggagg cctgacggtg      1620
     gaggtgtgca gcccgtcgct cactcagcag tggaagttca ccctcaacct gcagccgtag      1680
//
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