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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAP39624; SV 3; linear; genomic DNA; WGS; INV; 1647 BP.
XX
PA   CAAC02000606.1
XX
DE   Caenorhabditis briggsae AF16 C. briggsae CBR-ELPC-3 protein
XX
KW   WGS.
XX
OS   Caenorhabditis briggsae AF16
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis.
OX   NCBI_TaxID=473542;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1647
FT                   /organism="Caenorhabditis briggsae AF16"
FT                   /chromosome="V"
FT                   /strain="AF16"
FT                   /mol_type="genomic DNA"
FT                   /clone="cb25.fpc4470"
FT   CDS             join(CAAC02000606.1:484654..484773,
FT                   CAAC02000606.1:484822..485818,
FT                   CAAC02000606.1:485863..486131,
FT                   CAAC02000606.1:486174..486434)
FT                   /codon_start=1
FT                   /gene="Cbr-elpc-3"
FT                   /locus_tag="CBG23399"
FT                   /standard_name="CBG23399"
FT                   /product="C. briggsae CBR-ELPC-3 protein"
FT                   /note="contains similarity to Interpro domains IPR006638
FT                   (Elongator protein 3/MiaB/NifB), IPR000182 (GCN5-related N-
FT                   acetyltransferase), IPR016181 (Acyl-CoA N-
FT                   acyltransferase), IPR005910 (Histone acetyltransferase
FT                   ELP3)"
FT                   /db_xref="GOA:Q60LW7"
FT                   /db_xref="InterPro:IPR006638"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q60LW7"
FT                   /protein_id="CAP39624.3"
FT                   /translation="MDDKGSQRALLAQTVNEIVKLLIEAHNQKKDVNLNRLKCIVAQKN
FT                   GLSFQPKLVDIIAGVPADYKDTLLPKLKAKPVRTASGIAVVAVMSKPHRCPHINFTGNI
FT                   CVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYLQTRGRLNQLMQLGHSVDKVEF
FT                   IVMGGTFMSLPEDYRDFFIRNLHDALSGHTSASVEEAVAYSERSKMKCIGITIETRPDY
FT                   CLPRHLNDMLLYGCTRLEIGVQSTYEDVARDTNRGHTVKSVCETFHMAKDTGYKVVIHM
FT                   MPDLPNVGLERDKEQFLELFESPAFRPDGLKLYPTLVIRGTGLYELWKTGRYQSYPPSV
FT                   LVDLIATILSLVPPWTRVYRVQRDIPMPLVSSGVEHGNLREHAMAKMKELGLKCRDVRT
FT                   REVGIQEIHNKVRPEDVELIRRDYTANGGWETFISYEDPKQDILIGLLRLRKISDKAHR
FT                   AELKGNVSVVRELHVYGSVVSVADRDPKKFQHQGYGSLLMEEAERIAREEHESDKIAVI
FT                   SGVGTRDYYRKLGYELDGPYMSKTLDASSAA"
XX
SQ   Sequence 1647 BP; 507 A; 329 C; 385 G; 426 T; 0 other; 1632744002 CRC32;
     atggacgaca aaggttcaca gcgagcattg ctggctcaaa cggtcaatga aatcgtcaaa        60
     cttcttattg aagctcataa ccagaaaaaa gatgtgaact tgaatcggct aaaatgtatt       120
     gttgcacaga aaaatggact cagcttccaa ccaaaactgg tagatatcat tgctggagtt       180
     ccagcggact acaaggatac tcttctacca aaacttaagg caaaaccagt tcgaacagct       240
     tctggaatcg cagttgttgc agtgatgagc aaaccacatc gttgtccgca tatcaatttc       300
     actggaaaca tttgcgttta ttgtccagga ggcccagatt ctgactttga gtactctaca       360
     caaagttata ctggttacga gccaacaagc atgagagcca tccgagcaag atataatccg       420
     tatttgcaaa cacgtggaag attgaatcag ttgatgcaac taggtcattc tgtcgacaag       480
     gtcgagttca tcgtgatggg aggaacattc atgtcactac cagaggatta ccgagatttc       540
     tttattcgca atctccatga tgctctcagt ggacatactt ctgcttcagt tgaagaagcg       600
     gttgcctact ccgagagatc caaaatgaag tgcattggaa ttaccattga aaccaggcca       660
     gactactgtc tcccacgtca tctgaatgat atgcttctgt acggatgtac acgcctggaa       720
     atcggtgttc agtcaacata tgaagacgtg gcaagggata caaatcgagg tcataccgtt       780
     aaatcagttt gtgaaacctt ccatatggca aaagacactg gatacaaagt tgtaatccac       840
     atgatgcctg atttacctaa tgttggattg gaaagagaca aagagcaatt tttggagttg       900
     tttgaaagtc cagcattccg tccggatggc ttgaaacttt atccaacgtt agtgattcgt       960
     ggaacaggat tgtacgagct gtggaaaact ggaagatatc aaagttatcc accatcagtg      1020
     cttgttgatc taatcgcaac tattctatca ttggttcctc catggacgcg tgtttatcgt      1080
     gtgcaaagag acattccaat gccattggtt tcatcaggtg ttgaacatgg aaatctccga      1140
     gagcatgcaa tggcaaagat gaaggagctt ggattgaaat gtcgggatgt tcgaacaaga      1200
     gaagttggaa ttcaggaaat tcacaacaaa gttcgccccg aagacgtcga attgatccga      1260
     agagattata cggctaacgg tggatgggag acattcattt cgtatgaaga tccaaaacaa      1320
     gatattctca ttggattgct tcgattgaga aaaatctctg ataaagctca tagagcagag      1380
     ttgaagggta atgtgtctgt agtccgtgag cttcacgtat atggatcagt tgtctcggta      1440
     gccgaccggg atcccaagaa gttccaacac caaggatacg gatcactgtt gatggaagaa      1500
     gctgaaagga tagcaagaga agaacatgaa tcagataaga ttgcagtcat ctcgggagtt      1560
     ggaacccgcg actactaccg caagcttggt tatgaattgg atggtcccta catgagcaag      1620
     actcttgatg cttcgtcagc cgcataa                                          1647
//
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