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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAP36507; SV 2; linear; genomic DNA; WGS; INV; 1629 BP.
XX
PA   CAAC02000558.1
XX
DE   Caenorhabditis briggsae AF16 C. briggsae CBR-SPAS-1 protein
XX
KW   WGS.
XX
OS   Caenorhabditis briggsae AF16
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis.
OX   NCBI_TaxID=473542;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1629
FT                   /organism="Caenorhabditis briggsae AF16"
FT                   /chromosome="V"
FT                   /strain="AF16"
FT                   /mol_type="genomic DNA"
FT                   /clone="cb25.fpc4126"
FT   CDS             join(CAAC02000558.1:1267380..1267500,
FT                   CAAC02000558.1:1267547..1267729,
FT                   CAAC02000558.1:1267779..1267876,
FT                   CAAC02000558.1:1267964..1268663,
FT                   CAAC02000558.1:1268712..1269000,
FT                   CAAC02000558.1:1269049..1269286)
FT                   /codon_start=1
FT                   /gene="Cbr-spas-1"
FT                   /locus_tag="CBG19220"
FT                   /standard_name="CBG19220"
FT                   /product="C. briggsae CBR-SPAS-1 protein"
FT                   /note="contains similarity to Interpro domains IPR003960
FT                   (ATPase, AAA-type, conserved site), IPR003593 (ATPase, AAA+
FT                   type, core)"
FT                   /db_xref="GOA:A8XV40"
FT                   /db_xref="InterPro:IPR015415"
FT                   /db_xref="UniProtKB/Swiss-Prot:A8XV40"
FT                   /protein_id="CAP36507.2"
FT                   /translation="MFAFSKAPAGCSTYERVTQKFQDGSNKLRAAIEMDELTKQNGTIN
FT                   EKLQTAELYKQARQMLKEANEFNIMDIPESKRSEVREKREKTLNLEKSAQDRLIKICNE
FT                   VDPNMKRASTAADPCRAARITPRNTRATVPGDKKVSKVKQTEKAPHVCSRGDRCGAHQP
FT                   PPEKKSTPLKPVNQIRTRVKENKNPIGVQQQVFSFILSCCMRRNCRRPHYLFPCMISLK
FT                   MNYFKFQATLPNQLNTVNRSNLLKGVDKAIGERLLDEILDSTGVRMDDVAGCHSAKATL
FT                   EEAVILPALNPNLFSGLRQPVKGILLFGPPGNGKTLLAKAVAGESKQMFFNISASSLTS
FT                   KWVGDSEKTIRGLFQIARNGQPSIIFIDEIDSILCERSEKDAEVSRRMKTEFLVQFDGA
FT                   TSSPDDRILVIGATNRPYELDDAVLRRFPKRIMLNLPDTEARKELITNTLKKHDMMDGL
FT                   SSSDIRYIASNTSGFSNSDLVALCKEAAMVPVREIHRSKLSVTDGDKIRKIRASDFDTA
FT                   LRTIRPSTSDRILSKLSDFSRNFGC"
XX
SQ   Sequence 1629 BP; 508 A; 359 C; 370 G; 392 T; 0 other; 3230254713 CRC32;
     atgttcgcct tttcaaaggc tccggctggt tgttcgactt atgaaagagt gacacagaag        60
     tttcaagacg gatccaacaa actgagagca gcgatagaaa tggatgagct cacgaaacag       120
     aatggcacta taaacgagaa gctacagact gcagagctgt ataagcaagc acgacagatg       180
     ttaaaagaag caaacgagtt caatatcatg gatattccag aatcaaaacg cagtgaagtg       240
     cgagagaaga gagagaaaac gttgaatttg gagaagagtg ctcaggaccg attaattaaa       300
     atttgcaacg aagttgatcc aaatatgaaa agggcgtcga ctgctgctga cccttgtcga       360
     gcggccagaa tcactcctag aaacacgaga gcaacagtcc cgggtgataa aaaggtgtcg       420
     aaagtgaagc aaaccgagaa agctcctcac gtgtgttcgc gcggagatcg ttgcggagcg       480
     caccagccgc cgcccgagaa gaaatcaacc ccattgaagc cagtgaatca aattcgaact       540
     cgagttaagg agaataagaa cccaattggt gtgcagcagc aggtgtttag ttttattttg       600
     agttgctgca tgagaagaaa ctgtcgccgt ccccactacc tgttcccatg catgatatca       660
     ctgaaaatga actatttcaa atttcaggct acacttccca atcaactcaa taccgtgaac       720
     cgatcaaatc ttctgaaagg agttgacaaa gcaatcggag aacgtcttct cgatgaaatt       780
     ctggatagca ctggtgttcg aatggatgac gttgccggtt gtcattctgc gaaggctact       840
     ctcgaagaag cggtaattct ccctgccctc aacccgaatc tcttcagtgg tcttcgtcaa       900
     ccggtcaaag gaattcttct tttcgggcca ccaggaaacg gaaaaacgtt gttagctaaa       960
     gcagttgcag gagaatcgaa acaaatgttc ttcaacatca gcgcatcttc cctcacgtct      1020
     aaatgggttg gagactctga gaagacgatt cgcgggctct tccaaatcgc acggaatgga      1080
     cagccttcca tcattttcat cgatgaaatt gactcaatcc tatgtgagag atcagagaaa      1140
     gatgcagaag tatcacgtcg tatgaaaaca gaattcctcg ttcaatttga tggtgccact      1200
     tcatcaccag atgaccgaat tctggtcatc ggagccacaa atcgtcccta cgagttggat      1260
     gatgcagttt taagacgatt tccaaaaagg atcatgttaa atctcccgga caccgaagct      1320
     aggaaagaat tgatcacaaa cactttgaag aaacacgata tgatggatgg attatcgtcc      1380
     agtgatatca gatatatcgc atccaacacc agtggatttt ccaactcgga cttggtggct      1440
     ctctgtaaag aagcagccat ggttccagta cgcgaaatac acagatcgaa actttctgtg      1500
     acggatggag ataaaattag aaaaattcga gcatctgatt tcgacactgc tctccgcacg      1560
     attcgtcctt ctacttctga cagaattcta tcgaaactct ctgatttctc tcgtaatttt      1620
     ggttgttaa                                                              1629
//
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