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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAP32722; SV 2; linear; genomic DNA; WGS; INV; 1659 BP.
XX
PA   CAAC02000521.1
XX
DE   Caenorhabditis briggsae AF16 C. briggsae CBR-HEX-1 protein
XX
KW   WGS.
XX
OS   Caenorhabditis briggsae AF16
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis.
OX   NCBI_TaxID=473542;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1659
FT                   /organism="Caenorhabditis briggsae AF16"
FT                   /chromosome="X"
FT                   /strain="AF16"
FT                   /mol_type="genomic DNA"
FT   CDS             complement(join(CAAC02000521.1:270785..270980,
FT                   CAAC02000521.1:271261..271383,
FT                   CAAC02000521.1:271430..271690,
FT                   CAAC02000521.1:271739..271914,
FT                   CAAC02000521.1:271963..272193,
FT                   CAAC02000521.1:272244..272456,
FT                   CAAC02000521.1:272959..273074,
FT                   CAAC02000521.1:273128..273253,
FT                   CAAC02000521.1:273303..273429,
FT                   CAAC02000521.1:273478..273567))
FT                   /codon_start=1
FT                   /gene="Cbr-hex-1"
FT                   /locus_tag="CBG14058"
FT                   /standard_name="CBG14058"
FT                   /product="C. briggsae CBR-HEX-1 protein"
FT                   /note="contains similarity to Pfam domain PF00728 Glycosyl
FT                   hydrolase family 20, catalytic domain contains similarity
FT                   to Interpro domains IPR015883 (Glycoside hydrolase, family
FT                   20, catalytic core), IPR013781 (Glycoside hydrolase,
FT                   subgroup, catalytic core), IPR001540 (Glycoside hydrolase,
FT                   family 20)"
FT                   /db_xref="GOA:Q619W7"
FT                   /db_xref="InterPro:IPR015882"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q619W7"
FT                   /protein_id="CAP32722.2"
FT                   /translation="MRLIVLSLLFTSTLAWFYGRDEPDRWSVGGVWPLPQKIIYGSKNR
FT                   TLTYDKIGIDLGDKKDCDVLLAMADNYMNKWLFPYPVEMKTGGTEDFIITVTVKEECPG
FT                   GPPVHGASEEYLLRVSVSEAVINAQTVWGALRAMETLSHLVFYDQKSQEYQIRTAEIFD
FT                   KPRFPVRGIMIDSSRHFLSLNVIKRQLEIMSMNKLNVLHWHLVDSESFPYTSQKFPELH
FT                   GVGAYSPRHVYSREDISEVIAFARLRGIRVIPEFDLPGHTSSWKGRKGFLTECFDEKGE
FT                   ETFLPNLVDPMNDANFDFLAEFLEEVTETFPDQFLHLGGDEVSDYIVECWVRNKKIRKF
FT                   MDEKGFGNNTVLLENYFFEKLFSIVEKLKLKRKPIFWQEVFDNNIPDPNSIIHIWKGNT
FT                   HEEIYEQVKNITSKNFPVIVSACWYLNYIKYGADWRDEIRGTAPSNSRYYYCDPTSFNG
FT                   TDTQKNLVLGGIAAIWGELVDNTNIEARLWPRASAAAERLWSPAEKTQKAENAWPRMHE
FT                   LRCRLVSRGYRIQPNNNPDYCPFEFDEPPATKSEL"
XX
SQ   Sequence 1659 BP; 472 A; 351 C; 390 G; 446 T; 0 other; 3855946296 CRC32;
     atgcgactta tagttctatc tttgttattt acctccacac ttgcgtggtt ctatggccga        60
     gacgagccgg atcgttggag tgtcggaggg gtatggcctc tcccacagaa aattatctac       120
     ggctccaaga accgtacgct tacttatgat aaaatcggaa tcgatcttgg agacaagaag       180
     gattgcgatg ttctcctggc aatggcggac aattatatga acaaatggtt gtttccatac       240
     ccagttgaga tgaaaaccgg tggaactgaa gatttcatta tcacagtcac agtgaaagaa       300
     gagtgcccag gaggaccacc agttcacgga gctagtgagg agtatctgtt gcgtgtcagt       360
     gtctcggagg cagtcattaa cgcacaaacc gtatggggag cacttcgcgc aatggaaaca       420
     ttgagtcatc tggtttttta tgatcagaag tctcaagagt atcaaatccg cacagctgaa       480
     atctttgaca aacctcgttt cccggttcgt ggaattatga tcgactccag ccgtcatttc       540
     ttatctctaa acgttatcaa acgccaatta gagatcatgt caatgaacaa actcaatgtt       600
     ctccattggc atcttgtgga cagtgagtcc ttcccgtaca cctctcagaa gtttccagag       660
     cttcatggag tgggtgccta ttctcctcgt cacgtctact ctcgagagga tatttctgaa       720
     gttattgcat ttgccagact tcgtggtatt cgtgtcatcc ctgaattcga tttaccggga       780
     cacacttcat cctggaaggg tcgcaaaggt tttctaaccg aatgttttga tgagaaggga       840
     gaagaaacat tcttgccaaa tttggtggat ccaatgaatg atgccaattt tgactttctt       900
     gctgagttcc tggaagaggt cactgaaaca ttccctgatc agtttttgca tctcggtggt       960
     gatgaggtct cagattacat tgtggagtgt tgggtccgga ataaaaaaat tcggaagttc      1020
     atggatgaga agggatttgg aaataatact gtgctccttg aaaattattt cttcgaaaaa      1080
     ctattttcta ttgtggaaaa actcaaattg aaacgcaaac caatcttctg gcaagaagtg      1140
     ttcgacaaca acattcccga tccaaactcg attatccata tttggaaggg aaatacacac      1200
     gaggagattt atgagcaggt gaagaatatc acatcgaaaa actttccggt gattgtgtcc      1260
     gcatgctggt acttgaacta tatcaagtac ggcgccgatt ggagagacga gattcgtgga      1320
     actgctccgt ccaactcaag atactactac tgtgacccaa ccagtttcaa tggaactgat      1380
     actcagaaaa atctagtgct tggaggaata gctgcgatct ggggagagtt ggtggataac      1440
     actaatattg aagctagatt atggccaaga gcgtcagcag cggccgaaag actttggtca      1500
     ccagccgaaa agacacaaaa agccgaaaac gcgtggcccc gaatgcacga actgcgttgt      1560
     agattggtct ccagaggata ccgtattcag ccgaacaaca atcccgacta ttgtccattc      1620
     gagtttgatg agcctccagc gaccaagtcg gagctttaa                             1659
//
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