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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAP26139; SV 2; linear; genomic DNA; WGS; INV; 1095 BP.
XX
PA   CAAC02000470.1
XX
DE   Caenorhabditis briggsae AF16 C. briggsae CBR-TAG-335 protein
XX
KW   WGS.
XX
OS   Caenorhabditis briggsae AF16
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis.
OX   NCBI_TaxID=473542;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1095
FT                   /organism="Caenorhabditis briggsae AF16"
FT                   /chromosome="IV"
FT                   /strain="AF16"
FT                   /mol_type="genomic DNA"
FT                   /clone="cb25.fpc0143"
FT   CDS             join(CAAC02000470.1:33443..34220,
FT                   CAAC02000470.1:34268..34386,CAAC02000470.1:34434..34538,
FT                   CAAC02000470.1:34587..34679)
FT                   /codon_start=1
FT                   /gene="Cbr-tag-335"
FT                   /locus_tag="CBG06266"
FT                   /standard_name="CBG06266"
FT                   /product="C. briggsae CBR-TAG-335 protein"
FT                   /note="contains similarity to Pfam domains PF00132
FT                   (Bacterial transferase hexapeptide (three repeats)) (4),
FT                   PF00483 (Nucleotidyl transferase) contains similarity to
FT                   Interpro domains IPR001451 (Bacterial transferase
FT                   hexapeptide repeat), IPR005835 (Nucleotidyl transferase),
FT                   IPR018357 (Hexapeptide transferase, conserved site)"
FT                   /db_xref="GOA:A8X0H9"
FT                   /db_xref="InterPro:IPR005835"
FT                   /db_xref="UniProtKB/TrEMBL:A8X0H9"
FT                   /protein_id="CAP26139.2"
FT                   /translation="MKALILVGGYGTRLRPLTLTQPKPLVEFANKPMMLHQMEALAAVG
FT                   VDTVVLAVSYRAEQLEAEMTVHADRLGVKLIFSLEEEPLGTAGPLALARKHLEDDDPFF
FT                   VLNSDVICDFPFKQMVEFHKQHGKEGTIAVTKVEEPSKYGVVVFKEDGKIDDFVEKPQE
FT                   YVGNKINAGLYIFNSAILDRIPLKPTSIEKEIFPQMATSGNLYAYVLPGFWMDVGQPKD
FT                   FLKGMSLFLNHVQTTRTGALATGSNIHGTATIRGSVLVDPSATVGENCVIGPDVVIGPR
FT                   VQIEGGVRIQHSTILSDSTVGNYSWVSGSIIGRECHIGSWVRMENVCVLGDDVVVKDEV
FT                   YLNEASVLPHKVIAVNVPSKDIIM"
XX
SQ   Sequence 1095 BP; 315 A; 213 C; 267 G; 300 T; 0 other; 695973543 CRC32;
     atgaaagcgc tcattctagt tggaggatat ggaactcggc tgagaccgct cacactaaca        60
     cagcccaaac cactcgttga attcgccaac aagcctatga tgttgcatca gatggaagct       120
     ctagctgcgg ttggagtcga tacagttgtt ttagcagtta gctacagagc agaacagttg       180
     gaggcggaaa tgactgtgca cgcagatcgg cttggagtta agctgatttt ttctcttgaa       240
     gaagaaccgc tcggaactgc tggacctctg gctttggctc gaaaacatct agaggacgat       300
     gatccatttt tcgttcttaa cagtgatgtt atttgtgatt tcccattcaa gcaaatggtt       360
     gaatttcata agcaacatgg aaaagaggga acgattgcag taacaaaggt ggaagaacca       420
     tctaaatatg gagtcgttgt tttcaaagaa gatggaaaaa ttgatgactt cgttgagaaa       480
     ccacaggagt acgttggaaa caaaatcaac gccggcctct atattttcaa ctctgcaatt       540
     ctcgatcgaa ttcccctgaa acctacaagt atcgaaaaag aaatcttccc tcaaatggcg       600
     acttcaggta atctctatgc ctacgtactg cctggattct ggatggatgt aggacaacca       660
     aaagacttcc tcaagggaat gtctctgttt ttgaaccatg tgcaaacaac aaggacggga       720
     gcattagcta ctgggtcaaa tattcacgga acagccacga ttcgtggtag tgtcttagta       780
     gacccatctg caactgttgg tgagaactgt gttattggtc ccgatgttgt cattggccca       840
     agagttcaga ttgaaggagg tgttcgcatt caacattcca ctattttatc ggattcgacc       900
     gtaggcaact attcgtgggt ctcaggaagc attataggac gtgagtgtca tattggaagt       960
     tgggtccgta tggagaacgt atgtgttctt ggagatgatg tggttgtgaa agacgaagtc      1020
     tatctcaatg aagcgagtgt cttgccacac aaagttatag ctgtgaatgt tccttcaaag      1080
     gatatcatta tgtga                                                       1095
//
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