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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAP09246; SV 1; linear; genomic DNA; STD; VRT; 1623 BP.
XX
PA   BX005252.15
XX
DE   Danio rerio (zebrafish) novel protein similar to human chondroitin sulfate
DE   GalNAcT-2 (GALNACT-2)
XX
OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
OX   NCBI_TaxID=7955;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1623
FT                   /organism="Danio rerio"
FT                   /chromosome="13"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="DanioKey"
FT                   /clone="DKEY-192P21"
FT   CDS             join(BX005252.15:99235..99886,BX005252.15:102891..103107,
FT                   BX005252.15:105055..105156,BX005252.15:106101..106282,
FT                   BX005252.15:107137..107231,BX005252.15:107317..107398,
FT                   BX005252.15:109023..109315)
FT                   /locus_tag="DKEY-192P21.4-001"
FT                   /standard_name="OTTDARP00000017997"
FT                   /product="novel protein similar to human chondroitin
FT                   sulfate GalNAcT-2 (GALNACT-2)"
FT                   /note="match: proteins: Sw:Q8C1F4 Sw:Q8N6G5"
FT                   /db_xref="GOA:A8E7C8"
FT                   /db_xref="InterPro:IPR008428"
FT                   /db_xref="UniProtKB/TrEMBL:A8E7C8"
FT                   /protein_id="CAP09246.1"
FT                   /translation="MPRRGLPLQGRARWLLLGVFLLVILLLFAYLLECTPPADVSQVLP
FT                   GLAGDPYGKEYYQALLQEQEERHLSRAASLKRQIAQLKQELQEMSEKLRVLQEKKEGPG
FT                   PQSLNDGRDQEPGDLLEYLHSQIDKAEVNTGARLPSEYALVPFESFTTTKVYQLEMGLT
FT                   RHPEEKPVRKDRRDELVEVIEAGLDIINNPEEDDGQEDNIPMQRQTFTESQFFEGLYRT
FT                   ERDKGTLYELYFAKENSHEYRHVTLFRPFGPLMKVRSTSVDTASAIINIIVPLSGRTEA
FT                   FVQFLHNFREVCIQQDKRVHLTVVYFGQAGLQDVKESLKKMASEESFSNYTLIPVDEEF
FT                   SRGRGLDIGAHAWEKGGDVLMFFCDVDIYFTLEFLSTCRLNTAPGKRVFYPVVFSLYNP
FT                   AIVYGNLEFPPPIESQLIHKKDAGFWRDFGFGMTCQYRSDFLNIGGFDLEVKGWGVEDV
FT                   HLYRKYLRSDPIVIRTPVSGLFHLWHEKLCADELTPEQYRMCIQSKAMNEASHSHLGML
FT                   VFREEIETHLRKQAYKTQSRPAE"
XX
SQ   Sequence 1623 BP; 395 A; 377 C; 473 G; 378 T; 0 other; 1109330222 CRC32;
     atgcccagac gggggcttcc tctgcagggg cgggcacgct ggcttctcct gggtgttttc        60
     ctgttggtga tactgcttct ctttgcttat ctgctggagt gcacaccgcc tgcagacgtg       120
     agccaggtgc tcccaggtct ggcaggagat ccgtatggaa aagagtatta ccaagccctc       180
     ttacaggagc aggaagagcg ccatctcagc cgagcggcca gcctgaagag gcagatcgca       240
     cagctcaaac aagagctcca ggagatgagc gagaagctgc gggtgcttca agagaagaag       300
     gagggtcccg ggccgcagag tctgaacgat ggcagggatc aagagccagg tgatctcctg       360
     gagtatctgc attcacagat cgacaaggcc gaggtgaaca ctggagccag gctgcccagt       420
     gaatatgcgc tggttccctt tgagagcttc accaccacta aagtgtacca gctggagatg       480
     ggtttgactc gccatcctga ggagaaacct gtgaggaagg accggaggga tgagctggtg       540
     gaggtgatcg aagctggttt ggatattatt aataaccctg aggaagacga tggacaggag       600
     gacaacattc ctatgcagag gcagaccttc actgaaagcc aattttttga agggctctac       660
     aggacggaga gggacaaagg cacactgtat gagctctact ttgctaaaga gaattctcat       720
     gagtatcgtc acgtcaccct cttccggccg ttcgggcccc tcatgaaagt gaggagcacg       780
     tctgtggaca ccgccagtgc catcattaac atcatagtac cgctgtcggg acgcactgaa       840
     gcctttgttc agttcttgca taacttcagg gaggtttgta tccagcagga caagcgggtc       900
     catctcacag tggtgtattt tgggcaggca ggcttgcagg atgtgaagga gtctttgaag       960
     aaaatggcca gtgaagagag cttcagtaac tacactctga tccctgtgga tgaggagttt      1020
     tctcgaggtc gtggtctgga tattggagct catgcgtggg agaaaggagg agatgtgttg      1080
     atgttcttct gtgacgttga catctacttc acactggagt ttctcagcac ctgtcgactc      1140
     aatacagctc caggaaagag ggttttctat ccggtggttt tcagtttgta taatccagct      1200
     atagtttatg gaaatctgga gtttccgcca cccattgaga gtcagctgat tcataaaaaa      1260
     gatgctgggt tctggaggga ctttggattt ggcatgactt gtcagtatcg ctctgatttc      1320
     ctcaatattg gaggatttga cctggaagtg aaaggttggg gtgttgaaga tgtgcacttg      1380
     tacaggaagt acctgcggag cgatccgatc gtgatccgca cccccgtctc aggcctcttc      1440
     cacttgtggc acgagaagct gtgtgctgat gaactgaccc cagagcagta tcgcatgtgc      1500
     atccagtcca aggccatgaa cgaggcgtct cactctcacc ttggcatgct ggtcttcaga      1560
     gaagagatcg agacgcacct gcgcaaacag gcctacaaaa cccagagcag acccgcagaa      1620
     tga                                                                    1623
//
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