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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAL35601; SV 1; linear; genomic DNA; STD; PRO; 1119 BP.
XX
PA   AL111168.1
XX
DE   Campylobacter jejuni subsp. jejuni NCTC 11168 carbamoyl-phosphate synthase
DE   small chain
XX
OS   Campylobacter jejuni subsp. jejuni NCTC 11168
OC   Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
OC   Campylobacteraceae; Campylobacter.
OX   NCBI_TaxID=192222;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1119
FT                   /organism="Campylobacter jejuni subsp. jejuni NCTC 11168"
FT                   /sub_species="jejuni"
FT                   /strain="NCTC 11168"
FT                   /mol_type="genomic DNA"
FT   CDS             complement(AL111168.1:1428394..1429512)
FT                   /transl_table=11
FT                   /gene="carA"
FT                   /locus_tag="Cj1494c"
FT                   /product="carbamoyl-phosphate synthase small chain"
FT                   /EC_number="6.3.5.5"
FT                   /note="Original (2000) note: Cj1494c, carA, proabable
FT                   carbamoyl-phosphate synthase small chain, len: 371 aa;
FT                   similar to many e.g. CARA_ECOLI carbamoyl-phosphate
FT                   synthase small chain (EC 6.3.5.5) (382 aa), fasta scores;
FT                   opt: 946 z-score: 1094.4 E(): 0, 40.3% identity in 377 aa
FT                   overlap. 57.8% identity to HP1237. Contains PS00442
FT                   Glutamine amidotransferases class-I active site, Pfam match
FT                   to entry PF00117 GATase, Glutamine amidotransferases
FT                   class-I, and Pfam match to entry PF00988
FT                   CPSase_sm_chain,Carbamoyl-phosphate synthase small chain,
FT                   CPSase domain"
FT                   /note="Updated (2006) note: Characterised wihtin
FT                   Escherichia coli with acceptable identity scores. Putative
FT                   not added to product function. Functional classification
FT                   -Pyrimidine ribonucleotide biosynthesis"
FT                   /note="PMID:10428826"
FT                   /db_xref="GOA:Q9PMG8"
FT                   /db_xref="HSSP:1M6V"
FT                   /db_xref="InterPro:IPR000991"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9PMG8"
FT                   /inference="protein motif:Pfam:PF00988"
FT                   /inference="protein motif:Pfam:PF00117"
FT                   /inference="protein motif:Prosite:PS00442"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="CAL35601.1"
FT                   /translation="MKAYIYLENDIFLSAKAFGKSGTFFGELVFNTSLTGYQEIISDPS
FT                   YAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEKHG
FT                   KIGIYELDTRYLVKMIRNNGNLRAVISTEISNKEDLKIALEKSAKIDEVNFVKEVSTKK
FT                   NYSHKQGVWNASFQKFNDAKRSEKKVAVIDYGVKTNILNELVEVGFEVEVYPYNVKADE
FT                   LITLYKKGEIQGVFLSNGPGEPRILKQEIAEIKKLAEAKIPMLGICLGHQLLSNAFGYE
FT                   TYKMKFGQHGANHPVINLDTKTVEITAQNHNYNVPEELAQVAHITHRNLFGDNVEGVRY
FT                   KDYPIISVQHHPESSSGPHESKYIFKEFMNLM"
XX
SQ   Sequence 1119 BP; 422 A; 131 C; 208 G; 358 T; 0 other; 199999676 CRC32;
     atgaaggctt atatttattt agaaaatgat atttttttaa gtgctaaggc ttttggaaag        60
     agcggtactt tttttggaga gcttgtattt aacacttctt taacagggta tcaagaaatt       120
     atttcagatc cttcttatgc agggcaattt atcgtatttt ccatgccaga aattggtata       180
     gtgggaacca atgaaaatga taatgaaagc aaggaaattt ttgcaagtgg tgttttaatg       240
     cgtgaattaa gttccagttt ttcaaatttt cgcgctaaag aaagtctgca agattatctt       300
     gaaaaacatg gaaaaatagg aatttatgaa cttgatacga gatatctagt aaaaatgata       360
     agaaataatg gcaatttaag agctgtaatt tcaactgaaa tttcaaataa agaagattta       420
     aaaatcgcct tagaaaaatc agcaaaaatt gatgaagtaa attttgtaaa agaagttagc       480
     actaagaaaa attattctca taaacaaggc gtttggaacg ctagttttca aaaatttaat       540
     gatgctaaaa gaagtgagaa aaaagttgct gttatagatt atggtgttaa aacaaatatc       600
     ttaaatgaac ttgtagaagt aggttttgaa gtagaagttt atccatataa tgttaaagca       660
     gatgagttga ttactctgta taaaaaaggt gaaattcaag gcgtgtttct ttctaatggt       720
     ccaggtgagc caaggatttt aaaacaagag attgcagaga ttaaaaaact tgcagaagct       780
     aaaattccta tgcttggaat ttgcttaggt caccagcttt taagtaatgc ttttggatat       840
     gaaacttata aaatgaaatt tggacaacat ggagcaaatc atcctgtgat caatcttgat       900
     acaaaaacgg tagaaattac cgcacaaaat cataattata atgttccaga agaattagct       960
     caagtggctc atatcactca tagaaattta tttggcgata atgttgaagg agtaagatat      1020
     aaagactatc ctattatttc agtgcaacat catccagaaa gttcttcagg tcctcatgaa      1080
     agtaagtata tttttaaaga atttatgaat ttgatgtga                             1119
//
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