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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAL35458; SV 1; linear; genomic DNA; STD; PRO; 1071 BP.
XX
PA   AL111168.1
XX
DE   Campylobacter jejuni subsp. jejuni NCTC 11168 1-deoxy-D-xylulose
DE   5-phosphate reductoisomerase
XX
OS   Campylobacter jejuni subsp. jejuni NCTC 11168
OC   Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
OC   Campylobacteraceae; Campylobacter.
OX   NCBI_TaxID=192222;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1071
FT                   /organism="Campylobacter jejuni subsp. jejuni NCTC 11168"
FT                   /sub_species="jejuni"
FT                   /strain="NCTC 11168"
FT                   /mol_type="genomic DNA"
FT   CDS             complement(AL111168.1:1278851..1279921)
FT                   /transl_table=11
FT                   /locus_tag="Cj1346c"
FT                   /product="1-deoxy-D-xylulose 5-phosphate reductoisomerase"
FT                   /EC_number="1.1.1.267"
FT                   /note="Original (2000) note: Cj1346c, dxr, probable
FT                   1-deoxy-D-xylulose 5-phosphate reductoisomerase, len: 356
FT                   aa; similar to e.g. DXR_BACSU 1-deoxy-D-xylulose
FT                   5-phosphate reductoisomerase (EC 1.1.1.-) (388 aa), fasta
FT                   scores; opt: 610 z-score: 706.2 E(): 4.9e-32, 40.4%
FT                   identity in 349 aa overlap. 46.2% identity to HP0216"
FT                   /note="Updated (2006) note: Pfam domain PF02670
FT                   1-deoxy-D-xylulose 5-phosphate reductase identified within
FT                   CDS. Prosite domain PS00430 TONB_DEPENDENT_REC_1, TonB box,
FT                   N-terminal identified within CDS. Further support given to
FT                   product function. Characterisation work carried out within
FT                   Escherichia coli. This work along with motif identification
FT                   has led to putative being removed from product function.
FT                   Functional classification - Central intermediary metabolism
FT                   - General"
FT                   /note="PMID:15567415, PMID:10787409"
FT                   /db_xref="GOA:Q9PMV3"
FT                   /db_xref="HSSP:1K5H"
FT                   /db_xref="InterPro:IPR013512"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9PMV3"
FT                   /inference="protein motif:Pfam:PF02670"
FT                   /inference="protein motif:Prosite:PS00430"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="CAL35458.1"
FT                   /translation="MILFGSTGSIGVNALKLAALKNIPISALACGDNIALLNEQIARFK
FT                   PKFVSIKDSKNKHLVKHDRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKELG
FT                   KNIALANKESLVVAGSFLKGAKFLPVDSEHAALKFLLEGKKNIAKLYITASGGAFYRYK
FT                   IKDLNQVSVKDALKHPNWNMGAKITIDSATMANKLFEIIEAYHLYDFKEIDALIEPRSL
FT                   VHAMCEFKNGASTAYFSKADMKLAISDAIFEKQDTPILEAVDFSKMPALKFHPISTKKY
FT                   PIFKLKNTFLKEPNLGVIINAANEVGVYNFLENKSGFLDIAKCIFKALDHFGVPKISSI
FT                   EEVFEYDFKTREYLRS"
XX
SQ   Sequence 1071 BP; 388 A; 139 C; 196 G; 348 T; 0 other; 3835567723 CRC32;
     atgatacttt ttggaagtac gggcagtata ggagtaaatg ctcttaaact tgctgcttta        60
     aaaaacattc ccatttctgc tttagcttgt ggggataaca tcgctctttt aaatgagcaa       120
     atcgcaaggt ttaaacccaa atttgtttcc ataaaagatt caaaaaataa gcatttagtt       180
     aaacacgata gagtttttat agggcaagaa ggtttagagc aaattttaac agaatgtcaa       240
     gataagcttt tactcaatgc cattgtaggt tttgcaggac ttaaaagcac tttaaaggct       300
     aaagagcttg gcaaaaacat agctttagct aacaaagaaa gtcttgtagt agctgggagt       360
     tttttgaaag gggctaaatt tttacccgtt gatagtgagc atgcagcttt aaaattttta       420
     ctcgaaggta aaaaaaatat agcaaaactt tatatcacag caagtggtgg agctttttat       480
     aggtataaaa tcaaagattt aaatcaagtc agtgtcaaag atgctttaaa acatcctaat       540
     tggaacatgg gagcaaagat cactatagat agtgcgacta tggcaaataa gctttttgag       600
     attatagagg cttatcattt atatgatttt aaagaaattg atgctttaat agaaccaaga       660
     tctttagtgc atgcaatgtg tgaatttaaa aatggagcta gcacggcgta tttttcaaaa       720
     gcagatatga aactagctat ttcagatgct atatttgaaa aacaagatac gcctatttta       780
     gaggctgttg attttagcaa aatgcctgct ttaaaatttc atccaatcag cacaaaaaaa       840
     tatcctattt ttaagcttaa aaatacattt ttaaaagagc caaatttagg tgttatcatc       900
     aatgctgcta atgaagttgg tgtttataat tttttagaaa ataaaagtgg atttttagac       960
     attgctaaat gcatttttaa agcccttgat cattttggag tacctaaaat ttcaagcata      1020
     gaagaagttt ttgagtatga ttttaaaaca agagagtatt taaggagtta a               1071
//
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