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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAL35406; SV 1; linear; genomic DNA; STD; PRO; 561 BP.
XX
PA   AL111168.1
XX
DE   Campylobacter jejuni subsp. jejuni NCTC 11168 putative deoxycytidine
DE   triphosphate deaminase
XX
OS   Campylobacter jejuni subsp. jejuni NCTC 11168
OC   Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
OC   Campylobacteraceae; Campylobacter.
OX   NCBI_TaxID=192222;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..561
FT                   /organism="Campylobacter jejuni subsp. jejuni NCTC 11168"
FT                   /sub_species="jejuni"
FT                   /strain="NCTC 11168"
FT                   /mol_type="genomic DNA"
FT   CDS             AL111168.1:1224239..1224799
FT                   /transl_table=11
FT                   /gene="dcd"
FT                   /locus_tag="Cj1292"
FT                   /product="putative deoxycytidine triphosphate deaminase"
FT                   /EC_number="3.5.4.13"
FT                   /note="Original (2000) note: Cj1292, dcd, possible
FT                   deoxycytidine triphosphate deaminase, len: 186 aa; similar
FT                   to many predicted dcd proteins, and to DCD_ECOLI
FT                   deoxycytidine triphosphate deaminase (EC 3.5.4.13) (193
FT                   aa), fasta scores; opt: 160 z-score: 203.5 E():
FT                   0.00049,28.8% identity in 160 aa overlap. 71.4% identity to
FT                   HP0372. Contains Pfam match to entry PF00692 dUTPase"
FT                   /note="Updated (2006) note: Characterised within
FT                   Escherichia coli, however, identity score was marginal.
FT                   Thus, putative kept within product function. Literature
FT                   search identified papers giving further clues to product
FT                   function. Functional classification -2'-deoxyribonucleotide
FT                   biosynthesis"
FT                   /note="PMID:1324907, PMID:14617187"
FT                   /db_xref="GOA:Q9PN07"
FT                   /db_xref="InterPro:IPR011962"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9PN07"
FT                   /inference="protein motif:Pfam:PF00692"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="CAL35406.1"
FT                   /translation="MGLKADNWIRKMALEHKMIEPFCEANIGKGVVSYGLSSYGYDIRV
FT                   GREFKIFTNVNSTVVDPKNFVEENVVDFEGDVCIVPANSFALARTIEYFKMPDNVLAIC
FT                   LGKSTYARCGIIVNVTPFEPGFEGHITIEISNTTPLPAKIYANEGIAQVLFLQGDEKCD
FT                   TTYKDKKGKYQAQTGITLPRILK"
XX
SQ   Sequence 561 BP; 197 A; 83 C; 114 G; 167 T; 0 other; 1784143759 CRC32;
     atgggcttaa aagcggataa ttggataaga aaaatggcat tagaacacaa gatgatcgaa        60
     ccattttgcg aagcaaatat aggaaaaggt gtggtaagct atggactttc aagctatggt       120
     tatgatatac gtgtagggcg tgagtttaaa atttttacca atgttaattc aactgtagtg       180
     gatccaaaaa atttcgtaga agaaaatgta gtagattttg aaggcgatgt atgtatagtt       240
     cctgcaaatt cttttgccct agctagaact atagagtatt ttaaaatgcc tgataatgtc       300
     ttagctattt gtcttggcaa aagcacttat gcaagatgtg gcatcattgt caatgttacc       360
     ccttttgaac caggttttga aggacatatc actatagaaa tttcaaatac tacgccttta       420
     cctgcaaaaa tttatgccaa tgaaggtata gcgcaagtgt tgtttttgca aggcgatgaa       480
     aaatgtgaca ccacttataa agataaaaaa ggcaagtatc aagcccaaac tggcataacc       540
     ttgccaagaa ttttaaaata g                                                 561
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