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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAL35254; SV 1; linear; genomic DNA; STD; PRO; 996 BP.
XX
PA   AL111168.1
XX
DE   Campylobacter jejuni subsp. jejuni NCTC 11168 putative glycosyltransferase
XX
OS   Campylobacter jejuni subsp. jejuni NCTC 11168
OC   Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
OC   Campylobacteraceae; Campylobacter.
OX   NCBI_TaxID=192222;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..996
FT                   /organism="Campylobacter jejuni subsp. jejuni NCTC 11168"
FT                   /sub_species="jejuni"
FT                   /strain="NCTC 11168"
FT                   /mol_type="genomic DNA"
FT   CDS             complement(AL111168.1:1071408..1072403)
FT                   /transl_table=11
FT                   /locus_tag="Cj1137c"
FT                   /product="putative glycosyltransferase"
FT                   /note="Original (2000) note: Cj1137c, unknown, len: 331 aa;
FT                   similar to hypothetcal proteins in polysaccharide
FT                   biosynthesis operons e.g. TR:O86892 (EMBL:AJ006986)
FT                   Streptococcus pneumoniae CAPP33FI protein (322 aa), fasta
FT                   scores; opt: 295 z-score: 346.5 E(): 5.3e-12, 26.5%
FT                   identity in 294 aa overlap. No Hp match"
FT                   /note="Updated (2006) note: Pfam domain PF05704 Capsular
FT                   polysaccharide synthesis protein identified within CDS.
FT                   Product function modified to more specific family member.
FT                   No specific characterisation has been carried out yet.
FT                   Putative kept within product function. Gilbert
FT                   (Michel.Gilbert@nrc-cnrc.gc.ca) personal communication.
FT                   Identifed as part of Campylobacter jejuni
FT                   lipooligosaccharide locus (Cj1131c - Cj1152c). Functional
FT                   classification - Surface
FT                   polysaccharides,lipopolysaccharides and antigens"
FT                   /note="PMID:11689567, PMID:14742567,
FT                   PMID:11083778,PMID:10660542"
FT                   /db_xref="GOA:Q7BC54"
FT                   /db_xref="InterPro:IPR008441"
FT                   /db_xref="UniProtKB/TrEMBL:Q7BC54"
FT                   /inference="protein motif:Pfam:PF05704"
FT                   /protein_id="CAL35254.1"
FT                   /translation="MQIQQNNSLIYNTLTKKLSSFIPIKSTRRKLRNHIQYKLEHPKVT
FT                   NYLSNNYINPFLEGKIPHFDFEKKHYFKNDKIIWQFWYQGKNQASPMIQQCFNSVQSQM
FT                   KDDYTIIILDKDNIKDYLDFPPFVIEKLENNFFGEKTITFFSDLLRVCLLATYGGIWCD
FT                   ASIFLSSKIPSELCDKDFFTFERSKIKPSKEKLKKFIKSGYFSYGYFNWNDDFKVKMLS
FT                   SFMIAKTNNTFIQTLKDILMNYWKNEQSSENHYYFILHIIFELLKEHGFVNDIYKNMSD
FT                   IECHLLQFSAKEKFNSTLWEEIQKQSFLHKLTHFKSIKKDSMIDKIILQS"
XX
SQ   Sequence 996 BP; 420 A; 123 C; 117 G; 336 T; 0 other; 693761822 CRC32;
     atgcaaatac aacaaaacaa ttctttaatt tataatactt taacaaaaaa actaagctca        60
     tttataccca taaaatcaac aagaagaaaa ttaagaaatc atattcaata taagctagaa       120
     caccctaaag tgactaatta tctttcaaac aactatatta atcctttttt agaagggaaa       180
     attcctcatt ttgattttga aaaaaaacat tattttaaaa acgataaaat tatttggcaa       240
     ttttggtatc aaggtaaaaa tcaagcttca cctatgatac aacaatgttt taactctgta       300
     caaagtcaaa tgaaagatga ctacacaatt atcattttag ataaagataa tataaaagat       360
     taccttgatt ttccaccatt tgttatagaa aaattagaaa ataatttttt tggagaaaaa       420
     actataactt ttttttcaga tcttttaaga gtatgcttgc ttgcaactta tggaggtata       480
     tggtgtgatg caagtatatt tttaagttct aaaattccta gtgaactttg tgataaagac       540
     ttttttacct ttgaaagatc aaaaataaaa cctagtaaag aaaaattgaa aaaatttatc       600
     aaaagtggat atttttctta tggatacttt aactggaatg atgattttaa agttaaaatg       660
     ctaagtagtt ttatgatagc caaaacaaac aatactttta ttcaaactct aaaagatatt       720
     ttaatgaatt attggaaaaa tgagcaatca agtgaaaatc actattattt tatactacat       780
     atcatatttg aacttttaaa agagcatggc tttgtaaatg atatctataa aaacatgagc       840
     gatatagaat gccatttatt acaatttagt gccaaagaaa aatttaattc aactctttgg       900
     gaagaaattc aaaaacaaag ctttttacac aaactcacgc attttaaatc tataaaaaaa       960
     gattcaatga tagataaaat cattttgcaa agttga                                 996
//
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