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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAL35026; SV 1; linear; genomic DNA; STD; PRO; 987 BP.
XX
PA   AL111168.1
XX
DE   Campylobacter jejuni subsp. jejuni NCTC 11168 alanine racemase
XX
OS   Campylobacter jejuni subsp. jejuni NCTC 11168
OC   Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
OC   Campylobacteraceae; Campylobacter.
OX   NCBI_TaxID=192222;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..987
FT                   /organism="Campylobacter jejuni subsp. jejuni NCTC 11168"
FT                   /sub_species="jejuni"
FT                   /strain="NCTC 11168"
FT                   /mol_type="genomic DNA"
FT   CDS             complement(AL111168.1:844295..845281)
FT                   /transl_table=11
FT                   /gene="alr"
FT                   /locus_tag="Cj0905c"
FT                   /product="alanine racemase"
FT                   /EC_number="5.1.1.1"
FT                   /note="Original (2000) note: Cj0905c, alr, probable alanine
FT                   racemase, len: 328 aa; similar to e.g. TR:O85045
FT                   (EMBL:AF038438) Listeria monocytogenes alanine racemase (EC
FT                   5.1.1.1) (368 aa), fasta scores; opt: 233 z-score: 286.6
FT                   E(): 1.2e-08, 32.6% identity in 359 aa overlap, and
FT                   ALR1_ECOLI alanine racemase, biosynthetic (EC 5.1.1.1) (359
FT                   aa), fasta scores; opt: 193 z-score: 238.5 E(): 5.5e-06,
FT                   25.6% identity in 324 aa overlap. 28.6% identity to HP0941.
FT                   Contains Pfam match to entry PF00842 Ala_racemase, Alanine
FT                   racemase"
FT                   /note="Updated (2006) note: Characterised in Bacillus
FT                   stearothermophilus and others with marginal identity
FT                   scores. Appropriate motifs present. Putative not added to
FT                   product function. Functional classification - Murein
FT                   sacculus and peptidoglycan"
FT                   /note="PMID:9063881, PMID:2835089"
FT                   /db_xref="GOA:Q9PP26"
FT                   /db_xref="InterPro:IPR000821"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9PP26"
FT                   /inference="protein motif:Pfam:PF00842"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="CAL35026.1"
FT                   /translation="MSLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLLA
FT                   PLAKNLGVSFVAVKSEEEAREIEEFFENILILSHRPHGNENSRFIYALNDISQVKNYKQ
FT                   DIKIHLKIDTGMHRNGICVENLEHAINLIQGSDLKLTGMFTHFASADEMDGSFFVQKEN
FT                   FQKAKKIVKKYFSNLLFHSYNSAALFRGKIPEDEYCRVGLVQFGYGDSNLKRVLSLYAH
FT                   RLSQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFRYNGRGELVLGNGKAMLGKM
FT                   SMDSFSCENSGEEICVFKDADIWADFFHTINYEILVKLNPNIQRVLV"
XX
SQ   Sequence 987 BP; 357 A; 100 C; 191 G; 339 T; 0 other; 1185945934 CRC32;
     atgtctttaa taaaaattga tcaaaaagct tatgaataca atttaagaca tattgctaaa        60
     aaaataggga gttttcaaag attaatttgt gtttttaaag ataatgcata tggacatgga       120
     gctaagcttt tagctccatt agccaaaaat ttaggagttt cttttgttgc tgttaagagt       180
     gaagaagaag ctcgagaaat cgaagaattt tttgagaata tattaatact atcacatcgt       240
     cctcatggta atgaaaattc tcgatttatt tatgctttaa atgacatttc tcaagtaaaa       300
     aattacaagc aagatataaa aatacatcta aaaatagata caggcatgca tcgcaatgga       360
     atttgtgtag aaaatttaga gcatgctata aatcttattc aaggtagtga tttaaaactt       420
     actggaatgt ttacacattt tgctagtgca gatgaaatgg atggaagttt ttttgttcaa       480
     aaagaaaatt ttcaaaaagc taaaaagata gtaaaaaaat atttttcaaa tttattattt       540
     cattcgtata attctgcagc attatttaga gggaaaattc ctgaagatga atattgtaga       600
     gttgggcttg ttcaatttgg atatggggat tcaaatttaa aaagagtttt aagtttgtat       660
     gctcatagat taagtcaaag gattttacaa aaaggacaga gcataggata tggaggcatt       720
     tttactgctg caaaggatat ggaagtagca acttatgatt tgggttatgc tgatggtctt       780
     tttcgctaca atggaagggg ggagttagtg cttggaaatg gaaaagcaat gcttggaaag       840
     atgtcaatgg atagtttttc ttgtgaaaat tctggtgagg aaatttgcgt gtttaaagat       900
     gctgatattt gggctgattt ttttcatact attaactatg aaattttagt aaaattaaat       960
     cctaatattc aaagagttct agtataa                                           987
//
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