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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAL34534; SV 1; linear; genomic DNA; STD; PRO; 816 BP.
XX
PA   AL111168.1
XX
DE   Campylobacter jejuni subsp. jejuni NCTC 11168 3-deoxy-8-phosphooctulonate
DE   synthase
XX
OS   Campylobacter jejuni subsp. jejuni NCTC 11168
OC   Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales;
OC   Campylobacteraceae; Campylobacter.
OX   NCBI_TaxID=192222;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..816
FT                   /organism="Campylobacter jejuni subsp. jejuni NCTC 11168"
FT                   /sub_species="jejuni"
FT                   /strain="NCTC 11168"
FT                   /mol_type="genomic DNA"
FT   CDS             complement(AL111168.1:349600..350415)
FT                   /transl_table=11
FT                   /gene="kdsA"
FT                   /locus_tag="Cj0384c"
FT                   /product="3-deoxy-8-phosphooctulonate synthase"
FT                   /EC_number="2.5.1.55"
FT                   /note="Original (2000) note: Cj0384c, kdsA, probable
FT                   2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P
FT                   synthase), len: 271 aa; simlar to many e.g. KDSA_ECOLI
FT                   2-dehydro-3-deoxyphosphooctonate aldolase (EC 4.1.2.16)
FT                   (284 aa), fasta scores; opt: 665 z-score: 1107.7 E():
FT                   0,46.4% identity in 267 aa overlap. 63.2% identity to
FT                   HP0003. Contains PS00017 ATP/GTP-binding site motif A
FT                   (P-loop)"
FT                   /note="Updated (2006) note: Characterised within
FT                   Escherichia coli with acceptable identity score. Putative
FT                   not added to product function. EC number and product
FT                   function has now been updated.
FT                   2-dehydro-3-deoxyphosphooctonate aldolase, has been changed
FT                   to 3-deoxy-8-phosphooctulonate synthase. Functional
FT                   classification - Surface
FT                   polysaccharides,lipopolysaccharides and antigens"
FT                   /note="PMID:12581640"
FT                   /db_xref="GOA:Q9PIB8"
FT                   /db_xref="HSSP:1FWW"
FT                   /db_xref="InterPro:IPR006269"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9PIB8"
FT                   /inference="protein motif:Prosite:PS00017"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="CAL34534.1"
FT                   /translation="MKKMILIAGPCVIESKDLIFKVAEQLKNFNENPNIEFYFKSSFDK
FT                   ANRTSINSFRGPGLEEGLKILQSVKDEFGMKILTDIHESNQANPVSEVADVLQIPAFLC
FT                   RQTDLLVAAAKTKAKINIKKGQFLNPSDIKYSVKKVLQTRGIEDEGYEAAQRNGVFVAE
FT                   RGASFGYGNLVVDMRSLVIMREFAPVIFDATHSVQMPGAAGGSSGGKSEFVEPLARAAA
FT                   AVGIDGFFFETHINPCEALCDGPNMLNLTRLKNCVNTLLEIQNIIKENK"
XX
SQ   Sequence 816 BP; 291 A; 126 C; 163 G; 236 T; 0 other; 1327548813 CRC32;
     atgaaaaaaa tgatactcat tgctggtcct tgcgtgatag aaagcaaaga tttgattttt        60
     aaagttgctg aacagttaaa aaattttaat gaaaatccaa atatagaatt ttatttcaaa       120
     tcaagttttg ataaggccaa tcgcacaagt attaattctt ttcgaggtcc tggtcttgaa       180
     gaaggattaa aaattttaca aagcgtaaaa gatgaatttg gtatgaaaat cttaaccgat       240
     atacacgaaa gcaatcaagc aaaccctgta agtgaagtag ctgatgtctt gcaaattcct       300
     gcttttttat gtcgtcaaac cgatttactt gtagccgcag caaaaactaa ggcaaaaatt       360
     aatatcaaaa aaggacaatt tttaaaccca agcgatatca aatacagcgt taaaaaagtt       420
     ctacaaaccc gtggtataga agatgaaggc tatgaagctg ctcaaagaaa tggtgttttt       480
     gtagctgaaa gaggggctag ctttggctat ggaaatttag tagtagatat gcgttcttta       540
     gttatcatgc gtgaatttgc tccagttatt tttgatgcta cccatagcgt acaaatgcca       600
     ggggctgcag gtggaagtag cggagggaaa agcgaatttg tagaaccttt agcaagagcg       660
     gcagcagccg taggcataga tggctttttc tttgaaacac atattaatcc ttgcgaggct       720
     ttatgcgatg gacctaatat gcttaatctt acacgcctta aaaattgcgt taatacatta       780
     ctagaaatac aaaatatcat aaaggaaaac aaatga                                 816
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