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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAK05028; SV 1; linear; genomic DNA; STD; VRT; 1566 BP.
XX
PA   BX649545.14
XX
DE   Danio rerio (zebrafish) partial novel protein similar to vertebrate
DE   UDP-N-acetyl-alpha-D-galactosamine:polypeptide
DE   N-acetylgalactosaminyltransferase 12 (GalNAc-T12) (GALNT12)
XX
OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
OX   NCBI_TaxID=7955;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1566
FT                   /organism="Danio rerio"
FT                   /chromosome="19"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="CHORI-211"
FT                   /clone="CH211-9N13"
FT   CDS             complement(join(BX649545.14:79160..79297,
FT                   BX649545.14:83583..83738,BX649545.14:86816..86929,
FT                   BX649545.14:88939..89070,BX649545.14:94668..94844,
FT                   BX649545.14:99386..99503,BX649545.14:99896..100081,
FT                   BX649545.14:103573..103762,BX649545.14:106719..106888,
FT                   BX649545.14:108534..>108718))
FT                   /codon_start=1
FT                   /locus_tag="CH211-9N13.2-001"
FT                   /standard_name="OTTDARP00000015804"
FT                   /product="novel protein similar to vertebrate
FT                   UDP-N-acetyl-alpha-D-galactosamine:polypeptide
FT                   N-acetylgalactosaminyltransferase 12 (GalNAc-T12)
FT                   (GALNT12)"
FT                   /note="match: proteins: Sw:O08832 Sw:Q8BGT9 Sw:Q8IXK2
FT                   Sw:Q8N4A0 Tr:Q6IR91 Tr:Q6NX01"
FT                   /db_xref="GOA:Q1LVP2"
FT                   /db_xref="InterPro:IPR000772"
FT                   /db_xref="UniProtKB/TrEMBL:Q1LVP2"
FT                   /db_xref="ZFIN:ZDB-GENE-060503-704"
FT                   /protein_id="CAK05028.1"
FT                   /translation="PVYEKPALDVNALGEMGRAVKLDLSGEEKREEEESIKKHQINTYV
FT                   SDRISLHRRLAERWNPLCRNLKYDYLSLPTTSVVIAFYNEAWSTLLRTVHSVLETSPDL
FT                   LLNEVILVDDYSDREHLKEPLENYIADLKKVRLIRARKREGLVRARLLGASIATGEVLT
FT                   FLDCHCECHEGWLEPLLQRIKEEPSAVVCPVIDVIDWNTFQYLGNPGEPQIGGFDWRLV
FT                   FTWHSIPEHEQKRRSAATDVVRSPTMAGGLFAVNKKYFLYLGTYDTGMEVWGGENLEFS
FT                   FRIWQCGGSLEIHPCSHVGHVFPKKAPYSRNKALANSVRAAEVWMDDFKEVYYHRSPHA
FT                   RLEAYGDVTDRRKLRMRLRCKDFRWFLDNIYPDIQVPEDKPGMFGMLKNKGMTNYCFDY
FT                   NPPDEHKIAGHRVILYPCHGMGQNQFFEYSTLQEIRYNTRDPAGCVVADPVSTFLTMNL
FT                   CSKPREAVPEDQKFLFREDGSLYHVQTQKCVEAVDRTDAGSPGPALRPCSDSDAQKWFF
FT                   EERT"
XX
SQ   Sequence 1566 BP; 424 A; 360 C; 419 G; 363 T; 0 other; 2270152941 CRC32;
     cctgtttacg agaagcctgc tttagatgta aacgcgctgg gagagatggg cagagctgtt        60
     aaactggacc tgagtgggga agagaagcga gaggaagagg agagcatcaa aaaacatcaa       120
     ataaacactt atgtgagcga taggatatct ttacaccgca gactggctga aagatggaac       180
     cctctttgta gaaatctgaa atatgactac ctgagcctgc ctactacatc agtagtgatc       240
     gcattctaca atgaagcctg gtccacacta ttgaggaccg tgcacagtgt actggagacc       300
     tcacctgacc tgctgctgaa tgaagtcatt ctggtggatg actacagtga ccgagaacac       360
     ttaaaggagc ctctagagaa ttacatcgcc gatctgaaaa aggttcgtct gatccgagca       420
     aggaagagag aaggtctggt gcgagcgcgg cttttggggg cttccatcgc cacaggggaa       480
     gtgctgacct tcctcgattg ccactgcgag tgccatgaag gctggctgga gcctttactc       540
     cagagaataa aggaggagcc ttcagctgtg gtgtgtccag tcattgacgt cattgactgg       600
     aacaccttcc agtacctggg caacccagga gaacctcaga tcggaggatt tgactggcga       660
     ttggtgttca cgtggcactc tatcccagaa catgagcaga aacgcagaag tgccgccact       720
     gatgttgtca ggtctccaac aatggctggg ggtttgtttg ccgtcaacaa gaagtacttc       780
     ctttacctgg gcacatatga cacaggaatg gaagtctggg gtggagagaa cctggagttt       840
     tcatttagaa tctggcagtg tggaggaagc ctggaaatcc atccttgctc tcacgtgggt       900
     cacgtctttc cgaagaaagc tccatactca agaaacaagg ccttggccaa cagtgtgcga       960
     gcagcagaag tctggatgga tgatttcaaa gaggtgtatt accaccgcag ccctcatgca      1020
     cgtctggaag cgtatgggga tgtgacggat agacggaaac tcagaatgcg tcttcgctgc      1080
     aaagatttta gatggttctt ggataacatc taccctgata ttcaagtccc cgaagacaag      1140
     cctggaatgt ttggcatgtt gaagaacaaa ggaatgacca actactgctt cgactacaac      1200
     ccgcctgatg aacataagat agccggtcac cgggtaatcc tttacccatg tcatggcatg      1260
     ggacaaaacc agttcttcga gtactccaca ctccaggaaa tccgctacaa cacgagggat      1320
     cctgcaggct gtgtcgtagc tgatcccgtc tccacattcc tcaccatgaa tctttgtagt      1380
     aaacccagag aagctgtgcc cgaagaccag aagtttcttt tcagagagga tggctcttta      1440
     tatcacgttc agacgcagaa gtgtgttgaa gcagtggatc ggactgatgc tgggagtcct      1500
     ggacctgctc ttcggccttg ctcagactct gatgctcaga agtggttctt tgaagagaga      1560
     acatag                                                                 1566
//
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