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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAI20251; SV 1; linear; genomic DNA; STD; HUM; 1623 BP.
XX
PA   AL033519.42
XX
DE   Homo sapiens (human) tubby like protein 1
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
OX   NCBI_TaxID=9606;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1623
FT                   /organism="Homo sapiens"
FT                   /chromosome="6"
FT                   /map="p21.2-21.3"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="RPCI-3"
FT                   /clone="RP3-340B19"
FT   CDS             complement(join(AL033519.42:2364..2497,
FT                   AL033519.42:4018..4189,AL033519.42:7596..7694,
FT                   AL033519.42:7774..7885,AL033519.42:9778..9890,
FT                   AL033519.42:10040..10210,AL033519.42:13246..13349,
FT                   AL033519.42:13671..13787,AL033519.42:13864..13965,
FT                   AL033519.42:14898..15047,AL033519.42:15685..15843,
FT                   AL033519.42:16217..16307,AL033519.42:16676..16727,
FT                   AL033519.42:16849..16895))
FT                   /gene="TULP1"
FT                   /locus_tag="RP3-340B19.1-003"
FT                   /standard_name="OTTHUMP00000016266"
FT                   /product="tubby like protein 1"
FT                   /note="match: proteins: Sw:O00294 Sw:O75386 Sw:P46686
FT                   Sw:P50586 Sw:P50607 Tr:Q9W2L5"
FT                   /db_xref="GOA:O00294"
FT                   /db_xref="HGNC:12423"
FT                   /db_xref="InterPro:IPR018066"
FT                   /db_xref="PDB:2FIM"
FT                   /db_xref="UniProtKB/Swiss-Prot:O00294"
FT                   /func_characterised="similar sequence"
FT                   /protein_id="CAI20251.1"
FT                   /translation="MPLRDETLREVWASDSGHEEESLSPEAPRRPKQRPAPAQRLRKKR
FT                   TEAPESPCPTGSKPRKPGAGRTGRPREEPSPDPAQARAPQTVYARFLRDPEAKKRDPRE
FT                   TFLVARAPDAEDEEEEEEEDEEDEEEEAEEKKEKILLPPKKPLREKSSADLKERRAKAQ
FT                   GPRGDLGSPDPPPKPLRVRNKEAPAGEGTKMRKTKKKGSGEADKDPSGSPASARKSPAA
FT                   MFLVGEGSPDKKALKKKGTPKGARKEEEEEEEAATVIKKSNQKGKAKGKGKKKEERAPS
FT                   PPVEVDEPREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKR
FT                   KRSKTANYLISIDPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGYSTNVASLRQ
FT                   ELAAVIYETNVLGFRGPRRMTVIIPGMSAENERVPIRPRNASDGLLVRWQNKTLESLIE
FT                   LHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYR
FT                   YPLCALQAFAIALSSFDGKLACE"
XX
SQ   Sequence 1623 BP; 410 A; 478 C; 527 G; 208 T; 0 other; 2044703361 CRC32;
     atgcctctgc gggatgaaac cctccgagag gtgtgggcct ctgacagtgg gcatgaagaa        60
     gaaagcctga gcccggaggc cccgcggcgc cccaaacagc gacccgcccc ggcacagagg       120
     ctaaggaaga agaggacgga ggcccccgaa tccccctgcc ccacgggatc caagccccgg       180
     aagcccggag ctgggcggac ggggaggccg cgggaggagc cttccccaga cccagcccag       240
     gcccgggcgc cgcagacggt ctacgccagg ttcctcaggg accccgaggc caagaagcgc       300
     gacccccggg aaacctttct ggtagcccgt gccccagacg cggaggacga ggaggaggag       360
     gaagaggagg acgaggagga cgaggaagag gaggcagagg aaaagaaaga gaaaatcctt       420
     ctgcctccca agaagcccct gagagagaag agctccgcag acctgaagga gaggagggcc       480
     aaggcccagg gcccaagggg agacctggga agccctgacc ccccaccgaa acctctgcgt       540
     gttaggaata aggaagctcc agcaggggag gggaccaaga tgagaaagac caagaagaaa       600
     gggtctgggg aggccgacaa ggacccctca gggagcccag ccagtgcgag gaagagccca       660
     gcagccatgt ttctggttgg ggaaggcagt cctgacaaga aagccctgaa gaagaaaggc       720
     actcccaaag gcgcgaggaa ggaggaagaa gaggaggagg aggcagctac ggtgataaag       780
     aagagcaatc aaaagggcaa agccaaagga aaaggcaaaa agaaggagga gagggccccg       840
     tctccccccg tggaggtgga cgaaccccgg gagtttgtgc tccggcctgc cccccagggc       900
     cgcacggtgc gctgccggct gacccgggac aaaaagggca tggatcgagg catgtatccc       960
     tcctacttcc tgcacctgga cacggagaag aaggtgttcc tcttggctgg caggaaacga      1020
     aaacggagca agacagccaa ttacctcatc tccatcgacc ctaccaatct gtcccgagga      1080
     ggggagaatt tcatcgggaa gctgaggtcc aacctcctgg ggaaccgctt cacggtcttt      1140
     gacaacgggc agaacccaca gcgtgggtac agcactaatg tggcaagcct tcggcaggag      1200
     ctggcagctg tgatctatga aaccaacgtg ctgggcttcc gtggcccccg gcgcatgacc      1260
     gtcatcattc ctggcatgag tgcggagaac gagagggtcc ccatccggcc ccgaaatgct      1320
     agtgacggcc tgctggtgcg ctggcagaac aagacgctgg agagcctcat agaactgcac      1380
     aacaagccac ctgtctggaa cgatgacagt ggctcctaca ccctcaactt ccaaggccgg      1440
     gtcacccagg cctcagtcaa gaacttccag attgtccacg ctgatgaccc cgactatatc      1500
     gtgctgcagt tcggccgcgt ggcggaggac gccttcaccc tagactaccg gtacccgctg      1560
     tgcgccctgc aggccttcgc catcgccctc tccagtttcg acgggaagct ggcctgcgag      1620
     tga                                                                    1623
//
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