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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAI12039; SV 1; linear; genomic DNA; STD; VRT; 1584 BP.
XX
PA   BX279523.5
XX
DE   Danio rerio (zebrafish) partial novel protein similar to vertebrate
DE   elongation protein 3 homolog (S. cerevisiae) (ELP3)
XX
OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
OX   NCBI_TaxID=7955;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1584
FT                   /organism="Danio rerio"
FT                   /chromosome="20"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="CHORI-211"
FT                   /clone="CH211-63O20"
FT   CDS             complement(join(BX279523.5:<104761..104819,
FT                   BX279523.5:106285..106366,BX279523.5:108117..108344,
FT                   BX279523.5:108435..108500,BX279523.5:109462..109552,
FT                   BX279523.5:110517..110710,BX279523.5:121458..121584,
FT                   BX279523.5:122023..122184,BX279523.5:129267..129421,
FT                   BX279523.5:129604..129672,BX279523.5:129777..129840,
FT                   BX279523.5:131589..131659,BX279523.5:131759..131897,
FT                   BX279523.5:132145..132221))
FT                   /locus_tag="CH211-63O20.8-001"
FT                   /standard_name="OTTDARP00000005704"
FT                   /product="novel protein similar to vertebrate elongation
FT                   protein 3 homolog (S. cerevisiae) (ELP3)"
FT                   /note="match: proteins: Sw:Q8W425 Tr:Q7PJ82 Tr:Q7X7L3
FT                   Tr:Q8C2K2 Tr:Q8R369 Tr:Q9BVF7 Tr:Q9CZX0 Tr:Q9CZX0 Tr:Q9H9T3
FT                   Tr:Q9VQZ6"
FT                   /db_xref="GOA:Q5RIC0"
FT                   /db_xref="InterPro:IPR007197"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q5RIC0"
FT                   /db_xref="ZFIN:ZDB-GENE-050327-35"
FT                   /func_characterised="similar sequence"
FT                   /protein_id="CAI12039.1"
FT                   /translation="MMMTIADVIKQLVEAHEEGKDINLNKVKTKTSAKYGLSAQPRLVD
FT                   IIAAVPPHYRRALVPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDS
FT                   DFEYSTQSYTGYEPTSMRAIRARYDPYLQTRHRVEQLKQLGHSVDKVEFIVMGGTFMAL
FT                   PEEYRDYFIRNLHDALSGHTSNNVTEAVRYSERSNTKCVGITIETRPDYCLKRHLSDML
FT                   GYGCTRLEIGVQSVYEDVARDTNRGHTVRAVCESFHLAKDAGFKVVAHMMPDLPNVGME
FT                   RDVEQFIEFFENPAFRPDGLKLYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVARILA
FT                   LVPPWTRVYRVQRDIPMPLVSSGVEHGNLRELALARMKDMGTECRDVRTREVGIQEIHH
FT                   KVRPYQVELIRRDYVANGGWETFLSYEDPEQDILIGLLRLRRCSPQSFRPELKGGVSIV
FT                   RELHVYGSVVPVSSRDPSKFQHQGFGMMLMEEAERIARDEHGSSKLAVISGVGTRNYYR
FT                   KMGYELEGPYM"
XX
SQ   Sequence 1584 BP; 418 A; 368 C; 438 G; 360 T; 0 other; 3202260235 CRC32;
     atgatgatga caatagcaga cgtcatcaag cagttggttg aggcccatga agaaggaaaa        60
     gatattaatc tgaacaaggt caagacaaag acctcagcta aatacggcct ctccgcacag       120
     ccacggctgg tggacatcat tgctgcagta ccaccacact atcgcagagc attggtacca       180
     aagttgaaag ccaaacccat ccgcacagcc agtgggattg cagtcgttgc tgtgatgtgc       240
     aagcctcatc gctgtcctca cattagtttc actggcaaca tctgtgtcta ttgccctggg       300
     ggtccagact ccgattttga atattccaca cagtcataca caggatacga gcccacatca       360
     atgagagcca tccgtgcacg atacgatccc tacctccaga ctaggcaccg agtagaacag       420
     ctcaagcagc tgggacacag cgtggataaa gtggagttca ttgtgatggg aggcacattc       480
     atggctctgc cggaggagta cagggactat ttcatccgta acctccatga cgcgctgtca       540
     ggacacacgt ctaacaacgt caccgaagct gtcaggtact ccgagcgcag taacaccaaa       600
     tgtgtgggca tcacgattga gaccagaccc gactactgtc tgaagagaca cttgagtgac       660
     atgctgggct acggttgcac cagactggag atcggcgtac agagtgttta tgaggatgtt       720
     gctcgggata ccaacagagg acacacagtt cgggctgtgt gtgagtcttt ccaccttgct       780
     aaggatgctg gatttaaagt tgttgctcac atgatgccag acttacccaa tgttggcatg       840
     gaaagagacg tggagcagtt tatagagttt tttgagaacc ctgccttcag gccagacggg       900
     ctcaagcttt accctacact ggtgatacga ggcactggac tgtatgagct gtggaaaaca       960
     ggccgttata agagctactc tcccagtgcc ttggtggact tggtagcaag aatactagcg      1020
     ctggttccac catggactcg tgtgtatcgt gtacagaggg atatcccaat gccactggtg      1080
     agctctggag tggaacatgg caatctgaga gaactggcac tggccagaat gaaggacatg      1140
     ggcactgagt gtagagatgt aagaaccaga gaagtgggca tccaagagat tcatcacaaa      1200
     gttcgaccat atcaggtcga gctgatccgc agagactatg tggctaatgg aggctgggag      1260
     acctttctgt cttatgagga ccccgagcag gatattttaa ttggtctcct gcgtctccgc      1320
     cgatgctctc cgcagtcctt ccggcctgag ttgaagggtg gtgtatccat agttcgggag      1380
     ctgcatgtct acggaagtgt ggttcctgtc agcagccgag atcccagcaa gttccagcat      1440
     cagggttttg gaatgatgtt gatggaggag gccgagagga tagccagaga tgagcacggc      1500
     tccagcaaat tggctgttat ctcaggtgtt ggaacgagga attactacag aaaaatgggt      1560
     tatgaactgg aggggccata tatg                                             1584
//
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