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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAI11790; SV 1; linear; genomic DNA; STD; VRT; 1271 BP.
XX
PA   BX323558.7
XX
DE   Danio rerio (zebrafish) partial novel protein similar to vertebrate
DE   UDP-N-acetyl-alpha-D-galactosamine polypeptide
DE   N-acetylgalactosaminyltransferase family
XX
OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
OX   NCBI_TaxID=7955;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1271
FT                   /organism="Danio rerio"
FT                   /chromosome="4"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="CHORI-211"
FT                   /clone="CH211-214J24"
FT   CDS             complement(join(BX323558.7:<148667..148762,
FT                   BX323558.7:148859..148996,BX323558.7:150705..150890,
FT                   BX323558.7:150993..151107,BX323558.7:151179..151376,
FT                   BX323558.7:153545..153728,BX323558.7:153803..153969,
FT                   BX323558.7:154029..>154215))
FT                   /codon_start=3
FT                   /locus_tag="CH211-214J24.2-001"
FT                   /standard_name="OTTDARP00000007395"
FT                   /product="novel protein similar to vertebrate
FT                   UDP-N-acetyl-alpha-D-galactosamine polypeptide
FT                   N-acetylgalactosaminyltransferase family"
FT                   /note="match: proteins: Sw:Q6P9A2 Sw:Q7TT15 Sw:Q8K1B9
FT                   Tr:Q6P9A2"
FT                   /db_xref="GOA:Q5RHZ9"
FT                   /db_xref="InterPro:IPR001173"
FT                   /db_xref="UniProtKB/TrEMBL:Q5RHZ9"
FT                   /db_xref="ZFIN:ZDB-GENE-041210-83"
FT                   /protein_id="CAI11790.1"
FT                   /translation="KPAKKLFPDSDLFKRWSVELSEDEQRKAEDLFQKYGYNAFLSDRL
FT                   PLDRELPDTRDHRSASLCAEREYPPDLPTVSVVLIYLDEALSVIQRAVYSIINRTPAHL
FT                   LKEIILVDDHSTNEDLQTQLHVYISSINEKHPGLVKMVTHAEQKGLSQARISGWKAASG
FT                   DVVAILDAHIEVHVKWAEPLLARIQADRTLVLSPVFDKINYDDLEVTKYFASAHGFDWA
FT                   LWCMYVTFPKKWYNRNDPSLPGKSPSVMGILVVDRLFFGEIGTLDEGMQVYGGENVELG
FT                   IRVWLCGGSIEVVPCSKIAHIERAHKPYMPDLSNVMKRNALRVAEVWMDEYKKNVYMAW
FT                   GLPLENHGIDIGDLSERKKLRERLNCKPFKWYLENVYTELNPMDDLLGYGALINDLQTS
FT                   LCLDKGPSEENTPILYPCHFLTSQ"
XX
SQ   Sequence 1271 BP; 339 A; 281 C; 349 G; 302 T; 0 other; 628453607 CRC32;
     agaaaccagc aaagaagcta ttcccagact cggacctctt caagagatgg agtgtggagc        60
     tttcagagga tgagcagagg aaagctgagg atctctttca gaaatatgga tataacgctt       120
     tcctcagtga ccgactgcct ctggaccgag agctgccgga cactcgagac cacaggtcag       180
     cttcactatg cgctgagcgt gaatatcctc ccgatctgcc caccgtcagt gtggtgctga       240
     tttatctgga cgaggctctg tctgtcattc agagagccgt ttacagcatc atcaacagaa       300
     ctccagctca tctgctgaaa gagatcatac tggtggacga ccacagcact aacgaggatc       360
     tgcagacgca gctgcatgtt tacatcagct ccatcaatga gaagcaccca ggcctggtga       420
     agatggtgac gcatgcagaa cagaaaggcc tctcgcaggc caggatctca ggctggaagg       480
     ctgccagcgg cgacgtggtc gccattctgg acgcccacat tgaggtccat gtcaaatggg       540
     cggagcctct acttgcacgc atccaggctg atcgcacgct agtcttgagt cctgtgtttg       600
     ataaaattaa ttatgatgat ctggaggtga ctaagtattt cgcctctgct catggttttg       660
     actgggctct ctggtgtatg tatgtgacat tcccgaagaa gtggtacaat cgaaacgacc       720
     cttcgctgcc aggaaagagt ccgtctgtaa tgggaatact ggtggtggat cgtctgttct       780
     tcggtgagat cgggactctg gatgaaggga tgcaggtgta cggaggagag aatgttgaat       840
     tgggaatacg ggtgtggctg tgtggaggga gtatagaggt tgtgccctgc tccaaaatcg       900
     cacacattga aagagcgcac aaaccctaca tgcccgacct gagtaacgtc atgaagagaa       960
     acgccctcag agtggccgaa gtttggatgg acgagtacaa gaaaaatgtc tacatggctt      1020
     gggggcttcc cttagagaat catgggatag acattggtga cttatcagag agaaagaaac      1080
     tgagagagag gctgaactgc aaaccgttca aatggtatct ggaaaatgtc tatactgagt      1140
     taaatcctat ggatgatttg cttggttatg gagcgctgat taatgatctg caaacaagtc      1200
     tatgtttgga caaagggccg tcagaggaga acactcccat tttatatcca tgccattttt      1260
     taacctcaca g                                                           1271
//
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