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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAI11789; SV 1; linear; genomic DNA; STD; VRT; 1390 BP.
XX
PA   BX323558.7
XX
DE   Danio rerio (zebrafish) partial novel protein similar to vertebrate
DE   UDP-N-acetyl-alpha-D-galactosamine polypeptide
DE   N-acetylgalactosaminyltransferase family
XX
OS   Danio rerio (zebrafish)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes;
OC   Cyprinidae; Danio.
OX   NCBI_TaxID=7955;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1390
FT                   /organism="Danio rerio"
FT                   /chromosome="4"
FT                   /mol_type="genomic DNA"
FT                   /clone_lib="CHORI-211"
FT                   /clone="CH211-214J24"
FT   CDS             complement(join(BX323558.7:138174..138314,
FT                   BX323558.7:138408..138572,BX323558.7:138646..138741,
FT                   BX323558.7:138831..138968,BX323558.7:141028..141213,
FT                   BX323558.7:141316..141430,BX323558.7:142096..142293,
FT                   BX323558.7:142434..142617,BX323558.7:142692..>142858))
FT                   /codon_start=2
FT                   /locus_tag="CH211-214J24.3-001"
FT                   /standard_name="OTTDARP00000007396"
FT                   /product="novel protein similar to vertebrate
FT                   UDP-N-acetyl-alpha-D-galactosamine polypeptide
FT                   N-acetylgalactosaminyltransferase family"
FT                   /note="match: proteins: Sw:Q6IS24.2 Sw:Q7TT15.1"
FT                   /db_xref="GOA:Q5RI00"
FT                   /db_xref="InterPro:IPR000772"
FT                   /db_xref="UniProtKB/TrEMBL:Q5RI00"
FT                   /db_xref="ZFIN:ZDB-GENE-041210-84"
FT                   /protein_id="CAI11789.1"
FT                   /translation="CAEREYPPDLPTVSVVLIYLDEALSVIQRAVYSIINRTPAHLLKE
FT                   IILVDDHSTNEDLQTQLHVYISSINEKHPGLVKMVTHAEQKGLSQARISGWKAASGDVV
FT                   AILDAHIEVHVKWAEPLLARIQADRTLVLSPVFDKINYDDLEVTKYIASAHGFDWALWC
FT                   MYVTFPEKWYNQNDPSLPGKSPSVMGILVVDRLFFGEIGTLDEGMQVYGGENVELGIRV
FT                   WLCGGSIEVVPCSKIAHIERAHKPYMPDLSNVMKRNALRVAEVWMDEYKKNVYMAWGLP
FT                   MQNHGIDIGDLSERKKLRERLNCKRFKWYLENVYNLLNPMDDLLGYGSLINDLQTSLCL
FT                   DKGPSEENTPILYPCHFLISQQFFYTTSGEILVGPLQPLLHSRNRCLADPGSGRFPEFS
FT                   WCSDTEKPKHMYWDFKQGQAIQNRDTKRCLEISTKQTGDYKNNVFIQQCRNQHWRIQHA
FT                   IRDF"
XX
SQ   Sequence 1390 BP; 387 A; 312 C; 362 G; 329 T; 0 other; 3126910475 CRC32;
     atgcgctgag cgtgaatatc ctcccgatct gcccaccgtc agtgtggtgc tgatttatct        60
     ggacgaggct ctgtctgtca ttcagagagc cgtttacagc atcatcaaca gaactccagc       120
     tcatctgctg aaagagatca tactggtgga cgaccacagc actaacgagg atctgcagac       180
     gcagctgcat gtttacatca gctccatcaa tgagaagcac ccaggcctgg tgaagatggt       240
     gacccatgca gaacagaaag gcctctcgca ggccaggatc tcaggctgga aggctgccag       300
     cggcgacgtg gtcgccattc tggacgccca cattgaggtc catgtcaaat gggcggagcc       360
     tctacttgca cgcatccagg ctgatcgcac gctagtcttg agtcctgtgt ttgataaaat       420
     taattatgac gatctggagg tgactaaata cattgcctct gctcatggtt ttgactgggc       480
     tctctggtgt atgtatgtga cattcccgga gaagtggtac aatcaaaacg acccttcgct       540
     gccaggaaag agtccctctg taatgggaat actggtggtg gatcgtctgt tcttcggtga       600
     gatcgggact ctggatgaag ggatgcaggt gtacggagga gagaatgttg aattgggaat       660
     acgggtgtgg ctgtgtggag ggagtataga ggttgtgccc tgctccaaaa tcgcacacat       720
     tgaaagagcg cacaaaccct acatgcccga cctgagtaac gtcatgaaga gaaacgccct       780
     cagagtggcc gaagtttgga tggacgagta caagaaaaat gtctacatgg cttgggggct       840
     tcccatgcag aatcatggga tagacattgg tgacttatca gagagaaaga aactgagaga       900
     gaggctgaac tgcaaacggt ttaaatggta tctggaaaat gtctataatt tgttaaaccc       960
     catggatgat ttgcttggtt atggatcgct gattaatgat ctgcaaacaa gtctatgttt      1020
     ggacaaaggg ccgtcagagg agaacactcc cattttatat ccatgccatt ttttaatctc      1080
     acagcaattt ttctatacaa caagtggaga gatattagtc ggtccccttc agcccctttt      1140
     acacagccga aaccgctgtc tagctgatcc aggatcgggc cggtttccag agttttcctg      1200
     gtgttcagac acagagaaac caaaacacat gtactgggac ttcaaacagg gacaggccat      1260
     acagaacaga gacaccaagc gctgtctgga gatcagcacc aaacagacag gagactataa      1320
     aaataacgtt ttcattcagc agtgcagaaa ccaacactgg aggatacaac atgcaattcg      1380
     ggacttttaa                                                             1390
//
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