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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAE40473; SV 1; linear; genomic DNA; STD; PRO; 1287 BP.
XX
PA   BX640411.1
XX
DE   Bordetella pertussis 3-deoxy-D-manno-octulosonic-acid transferase
XX
OS   Bordetella pertussis
OC   Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales;
OC   Alcaligenaceae; Bordetella.
OX   NCBI_TaxID=520;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1287
FT                   /organism="Bordetella pertussis"
FT                   /strain="Tohama I"
FT                   /mol_type="genomic DNA"
FT   CDS             BX640411.1:92986..94272
FT                   /transl_table=11
FT                   /gene="kdtA"
FT                   /gene_synonym="waaA"
FT                   /locus_tag="BP0095"
FT                   /product="3-deoxy-D-manno-octulosonic-acid transferase"
FT                   /note="Identical to the previously sequenced Bordetella
FT                   pertussis DNA for lipopolysaccharide biosynthesis locus
FT                   KdtA TR:Q45374 (EMBL:X90711) (428 aa) fasta scores: E():
FT                   2.9e-167, 100.000% id in 428 aa, and to Bordetella
FT                   bronchiseptica putative 3-deoxy-D-manno-octulosonic-acid
FT                   transferase WaaA TR:O88003 (EMBL:AJ007747) (428 aa) fasta
FT                   scores: E(): 2.1e-166, 99.533% id in 428 aa, and similar to
FT                   Escherichia coli 3-deoxy-D-manno-octulosonic-acid
FT                   transferase KdtA or WaaA or B3633 or Z5057 or ECS4508
FT                   SW:KDTA_ECOLI (P23282) (425 aa) fasta scores: E(): 8.9e-46,
FT                   39.450% id in 436 aa"
FT                   /db_xref="GOA:Q45374"
FT                   /db_xref="InterPro:IPR007507"
FT                   /db_xref="UniProtKB/TrEMBL:Q45374"
FT                   /protein_id="CAE40473.1"
FT                   /translation="MGRGVYTLALRGLAPLIWLWMWRRARRAGGQWELFAPARFGRAGA
FT                   RAPAPLAAPVWVHAVSLGETRAAQPLVQALLERGLPVLLTHTTATGRAEGERLFGAAIG
FT                   RGQLQQAWLPYDFPGATRRFLARHAPRCGLLMEREVWPNLLAAARAQGVPMALVSARFS
FT                   ASSLRQAGWLGQALREALAGLDRVLAQTDEDGARLCQAGANAYTVTGSLKFDVALPEAQ
FT                   LRVGHAWAGATGRPVIALASTREGEDAMFIEAIGALQAHRAATPRPLILLIPRHPQRFD
FT                   EAAAQLQAAGLAYARRSAGSGEPGPHIDVLLGDTLGEMPFYYAAADVAIVGGSFARLGG
FT                   QNLIEACAAGTPVIVGPHTFNFKDAARDAIAAGAALRAPDARTALDWALQLLAEPARRQ
FT                   AMSEAARAWTAAHAGATRRTLDALEDWLG"
XX
SQ   Sequence 1287 BP; 141 A; 447 C; 508 G; 191 T; 0 other; 1401342187 CRC32;
     atgggccgcg gcgtctatac cctggcgttg cggggcctgg cgccgttgat ctggctatgg        60
     atgtggcgcc gcgcgcggcg cgcgggcggc cagtgggagt tgttcgcgcc ggcccgcttc       120
     ggtcgcgccg gcgcgcgcgc gcccgcgccg ctggccgcgc cggtctgggt gcatgcggtc       180
     agcctgggcg agacgcgcgc ggcgcagccg ctggtccagg ccctgctgga gcgtggcctg       240
     cccgtcctgt tgacccatac caccgccacc ggccgggccg agggcgagcg cctgttcggt       300
     gcggcgatcg gacgcgggca attgcagcaa gcctggctgc cctacgattt tcctggcgcg       360
     acgcggcgct tcctggcgcg ccatgcgcct cgctgcggtt tgctgatgga gcgggaagtc       420
     tggcccaatc tgctggcggc ggcgcgcgcg cagggggtgc cgatggcgct ggtcagcgcg       480
     cgcttttccg cttcgtcgct gcgccaggcc ggctggctgg gccaggcgct gcgtgaggcc       540
     ctggcgggcc tggaccgggt gctggcgcag accgacgagg atggcgcgcg cctgtgccag       600
     gccggtgcga atgcctacac ggtgaccggc agcctgaagt tcgacgtggc gctgcccgag       660
     gcgcaattgc gggtcggaca cgcctgggcc ggggcgacgg gccggcccgt gattgcgctg       720
     gcgagcacgc gcgagggcga ggacgccatg ttcatcgagg cgatcggcgc cttgcaggcg       780
     catcgcgccg ccacgccgcg gccgctgatc ctgctgattc ctcgccatcc ccagcgtttc       840
     gacgaggcgg ccgcccagtt gcaggcggcc ggcctggcct atgcgcggcg ctcggccggc       900
     tcgggcgagc ccggaccgca tatcgacgta ctgctgggcg ataccctggg cgagatgccg       960
     ttctactacg cggccgccga tgttgccatc gtggggggca gcttcgccag gctgggcggg      1020
     cagaacctga tcgaagcctg cgcggccggc acgccggtca tcgtcggccc gcatacgttc      1080
     aatttcaagg atgccgcccg ggacgccatt gcggcggggg cggcgctgcg tgcgcccgac      1140
     gcgcgcaccg cgctcgattg ggcgctgcag ctgctggccg agccggcacg ccggcaggcc      1200
     atgagcgagg ccgcgcgcgc ctggaccgcc gcgcatgccg gcgccacgcg gcgcacgctg      1260
     gacgcgctgg aggattggct gggatag                                          1287
//
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