EBI Dbfetch

ID   CAE17977; SV 2; linear; genomic DNA; STD; INV; 2205 BP.
XX
PA   Z81131.2
XX
DE   Caenorhabditis elegans C. elegans protein T24D1.1b, confirmed by transcript
DE   evidence
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis.
OX   NCBI_TaxID=6239;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2205
FT                   /organism="Caenorhabditis elegans"
FT                   /chromosome="I"
FT                   /strain="Bristol N2"
FT                   /mol_type="genomic DNA"
FT                   /clone="T24D1"
FT   CDS             join(Z81131.2:4858..4866,Z81131.2:5748..6424,
FT                   Z81131.2:6865..7348,Z81131.2:7597..8024,
FT                   Z81131.2:8225..8570,Z81131.2:8621..8698,
FT                   Z81131.2:9212..9394)
FT                   /gene="sqv-5"
FT                   /locus_tag="T24D1.1b"
FT                   /standard_name="T24D1.1b"
FT                   /product="C. elegans protein T24D1.1b, confirmed by
FT                   transcript evidence"
FT                   /note="C. elegans SQV-5 protein; contains similarity to
FT                   Pfam domain PF05679 Chondroitin
FT                   N-acetylgalactosaminyltransferase contains similarity to
FT                   Interpro domain IPR008428 (Chondroitin
FT                   N-acetylgalactosaminyltransferase)"
FT                   /db_xref="GOA:Q7Z1Z2"
FT                   /db_xref="InterPro:IPR008428"
FT                   /db_xref="UniProtKB/TrEMBL:Q7Z1Z2"
FT                   /db_xref="WormBase:WBGene00005023"
FT                   /protein_id="CAE17977.2"
FT                   /translation="MRVRSTCRMPVSRATVTILLGILFGFSITYYLTALKSLTNPIICG
FT                   PEQQIGGFDYLDVISQRADADVFTRSQSLPGHRRGLILVAIMTAAKYVDTRAYNVWKTW
FT                   AQHIPGRVLIFVAEGTESVHEDMPLIRLKGVDDTYPPQKKSFAMVKWLAENMADEYDWF
FT                   LRADDDLYIRGEELALFLRSVDSSKAHIIGQAGLGNSAEYGLLALGSTDNYCMGGPGIV
FT                   MSRDTLLKVSPHLESCLQHMLTSHEDVELGRCIRKHVGVACTWNYEMQKLFHNNQSAIK
FT                   ESYAKNMKELKDAITLHPIKDPAVMRKVHLRNREIKLREARAKRSLLSSELSTAKAQTL
FT                   VRMTPNRTNDLTPWEYINNNKILFCADRVNCPRHTVDLSIRTEMADTITQLFDEFNTNA
FT                   RQRGRVLQFQSLQYGYMRVEPTKGVDYVLDMLLWFKKFRPPNRTTISVRRHAYVQQTFG
FT                   KLRSLSEGVFRSNMRANSTLIEDPTLHMIMPLRGRAAIFARFAQHLKSICARGGDDLAV
FT                   SLTIVLYSSEDEMENRETIEMLRASFIPVTVIEMGDVSFSRGVALMRGAETLPANALLF
FT                   FTDVDMLFTCDALKRIKSNTILNAQIYFPIVFSEFSHESWSENDKLLADAFHYGRGRGY
FT                   FRHFGYGLAAMYKADLMDVGGFDTKIEGWGKEDVDLFEKAIKNGRLRVIRVPEPGLVHI
FT                   YHPIHCDENMPTAQKDMCHGSKAASLASIDTLVEQIAQYT"
XX
SQ   Sequence 2205 BP; 663 A; 430 C; 490 G; 622 T; 0 other; 1882534180 CRC32;
     atgcgagtgc ggagcacatg cagaatgccg gtctcccgag ccaccgtcac aatcctactc        60
     ggaatcctgt ttggtttctc aatcacttac tatctgacgg ctctcaaatc tctgacaaat       120
     ccaataatct gtggcccaga acaacaaatt ggcggtttcg attatctcga tgtgataagt       180
     caacgtgctg atgctgatgt tttcacaaga tcccaaagtc ttcccggtca tcgaaggggt       240
     ctgattcttg tggctattat gactgctgca aaatacgttg atacacgtgc ttataatgtt       300
     tggaaaacat gggctcaaca cattcccgga cgagttttaa tatttgttgc cgaaggaact       360
     gaatcagtgc atgaggatat gccattaatt cgtctgaaag gagttgatga tacttatcca       420
     ccacagaaga aaagtttcgc aatggtaaaa tggttggcag agaatatggc tgatgaatat       480
     gattggttct tgcgagcaga cgacgacctc tacattagag gagaagagct cgctttattc       540
     ctaagatctg tcgattcatc caaagctcat atcatcggac aggctggact tggtaacagt       600
     gcggaatatg gtcttctagc tcttggatct accgataatt attgtatggg aggacctgga       660
     attgttatga gcagggacac cttattaaaa gtatctcctc atctcgaatc atgcctccaa       720
     cacatgctga cttctcacga ggacgtcgaa ctcgggcggt gtattcgaaa acatgtcggt       780
     gtagcttgca cgtggaatta tgaaatgcaa aagttgttcc ataataatca aagtgcaatc       840
     aaggagtcat atgcaaaaaa tatgaaagaa ttgaaagatg caattactct tcatccgatt       900
     aaagatccag ctgtaatgag gaaggttcat cttcgaaatc gagaaattaa acttcgtgaa       960
     gcacgagcta aacgaagtct tttgagttcg gagctcagta ctgcaaaagc acagacattg      1020
     gtacgaatga caccgaatag aacgaatgat ttgacaccat gggaatatat taataacaat      1080
     aaaattctgt tttgtgcgga tcgggtcaat tgtcctcggc atactgtaga tttgagtatt      1140
     cggacggaaa tggccgacac tatcacacag ttattcgacg agttcaacac aaatgctcgc      1200
     caaagaggtc gtgttcttca atttcaaagt cttcaatatg gatacatgcg tgttgaacct      1260
     acaaaaggag tcgattatgt tcttgacatg ttactttggt tcaaaaagtt ccgtccacca      1320
     aacagaacaa caatttccgt tcgaagacac gcgtatgttc aacaaacatt cggaaaactt      1380
     cgaagtctct ctgaaggagt gttccgatca aatatgagag caaactctac acttattgaa      1440
     gatccaacat tgcatatgat tatgccatta agaggaagag ctgccatatt tgcaagattt      1500
     gctcaacatt tgaagagtat ttgtgcgaga ggaggagatg atttagctgt ttcattgaca      1560
     attgtattat actcgagtga agatgaaatg gagaatagag aaacgattga aatgctccgt      1620
     gcaagcttca tcccagtaac agtaatcgaa atgggtgatg tttcattctc acgtggtgtt      1680
     gctcttatgc gtggagctga aactcttcca gccaatgctc ttctattctt tactgatgtt      1740
     gatatgctat tcacatgtga tgcattgaaa cgtataaaat cgaatacaat tctcaacgca      1800
     caaatctact tcccgatcgt tttttctgaa ttctcacatg agagttggtc tgaaaatgac      1860
     aagttattgg ctgacgcctt ccattatgga cgtggacgtg gatattttag acattttggt      1920
     tatggtctcg cagcgatgta caaggcggat ttgatggatg tcggagggtt tgacacaaag      1980
     atcgaaggat ggggaaagga agatgttgac ttgtttgaga aggcaatcaa aaacggtcgt      2040
     ctccgagtga ttcgagtccc tgaacctgga cttgttcaca tctatcaccc aattcattgc      2100
     gatgaaaata tgccaactgc tcaaaaggat atgtgccatg gttcaaaagc agcaagtctt      2160
     gcttcaattg atacacttgt cgagcagatt gcccagtaca catga                      2205
//