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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAD97349; SV 1; linear; genomic DNA; STD; PRO; 603 BP.
XX
PA   BX248342.1
XX
DE   Mycobacterium bovis AF2122/97 PROBABLE ATP-DEPENDENT CLP PROTEASE
DE   PROTEOLYTIC SUBUNIT 1 CLPP1 (ENDOPEPTIDASE CLP)
XX
OS   Mycobacterium bovis AF2122/97
OC   Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
OC   Corynebacterineae; Mycobacteriaceae; Mycobacterium;
OC   Mycobacterium tuberculosis complex.
OX   NCBI_TaxID=233413;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..603
FT                   /organism="Mycobacterium bovis AF2122/97"
FT                   /strain="AF2122/97"
FT                   /mol_type="genomic DNA"
FT   CDS             complement(BX248342.1:220335..220937)
FT                   /transl_table=11
FT                   /gene="clpP1"
FT                   /locus_tag="Mb2488c"
FT                   /product="PROBABLE ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC
FT                   SUBUNIT 1 CLPP1 (ENDOPEPTIDASE CLP)"
FT                   /EC_number="3.4.21.92"
FT                   /note="Mb2488c, clpP1, len: 200 aa. Equivalent to Rv2461c,
FT                   len: 200 aa, from Mycobacterium tuberculosis strain H37Rv,
FT                   (100.0% identity in 200 aa overlap). Probable clpP1,
FT                   ATP-dependent clp protease proteolytic subunit 1 (EC
FT                   3.4.21.92), equivalent to Q9CBY3|CLP1_MYCLE ATP-DEPENDENT
FT                   CLP PROTEASE PROTEOLYTIC SUBUNIT from Mycobacterium leprae
FT                   (224 aa), FASTA scores: opt: 1226, E(): 1.3e-71, (95.0%
FT                   identity in 200 aa overlap). Also highly similar to others
FT                   e.g. Q9F315|CLPP1 from Streptomyces coelicolor (219 aa),
FT                   FASTA scores: opt: 713, E(): 9.3e-39, (61.75% identity in
FT                   183 aa overlap); P80244|CLPP_BACSU from Bacillus subtilis
FT                   (197 aa), FASTA scores: opt: 658, E(): 2.8e-35, (54%
FT                   identity in 187 aa overlap); Q9WZF9|CLPP_THEMA|TM0695 from
FT                   Thermotoga maritima (203 aa), FASTA scores: opt: 653, E():
FT                   6.1e-35, (55.25% identity in 172 aa overlap); etc. Also
FT                   similar to downstream ORF Rv2460c|MTV008.16c|clpP2 (214
FT                   aa), FASTA score: (48.3% identity in 172 aa overlap).
FT                   BELONGS TO PEPTIDASE FAMILY S14, ALSO KNOWN AS CLPP FAMILY.
FT                   Note that previously known as clp."
FT                   /db_xref="GOA:P0A527"
FT                   /db_xref="HSSP:1TYF"
FT                   /db_xref="InterPro:IPR018215"
FT                   /db_xref="UniProtKB/Swiss-Prot:P0A527"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="CAD97349.1"
FT                   /translation="MSQVTDMRSNSQGLSLTDSVYERLLSERIIFLGSEVNDEIANRLC
FT                   AQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAASMGEFLL
FT                   AAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIE
FT                   RIEADSDRDRWFTAAEALEYGFVDHIITRAHVNGEAQ"
XX
SQ   Sequence 603 BP; 120 A; 193 C; 182 G; 108 T; 0 other; 72355426 CRC32;
     gtgagccaag tgactgacat gcgttcgaac tcgcagggtc ttagcctcac ggattcggtc        60
     tacgagcgct tgctctccga gcgcatcatc ttcctgggct cggaggtgaa cgacgagatc       120
     gccaaccggt tatgcgctca gattctgctg ctggccgccg aagacgccag caaggacatc       180
     agcctctaca tcaattcgcc gggtggatcg atcagcgccg gcatggcgat ctacgacacc       240
     atggtgctgg cgccctgtga catcgccacc tacgcgatgg gcatggccgc ctcgatgggc       300
     gagttcctgc tggcggcagg taccaagggc aagcgctacg cgctgccgca tgctcgcatc       360
     ctgatgcacc agccgttggg cggggtgacc ggcagcgcgg ccgatatcgc catccaggcc       420
     gagcagttcg ccgtgatcaa gaaagaaatg ttccggctca acgccgaatt caccggccag       480
     ccgatcgagc gcattgaggc ggattccgat cgcgaccgct ggttcaccgc cgccgaagcc       540
     ctggaatacg gtttcgtcga tcacatcatc acccgcgccc acgtcaatgg agaagcacag       600
     tga                                                                     603
//
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