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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAD95586; SV 1; linear; genomic DNA; STD; PRO; 990 BP.
XX
PA   BX248345.1
XX
DE   Mycobacterium bovis AF2122/97 PROBABLE LYTB-RELATED PROTEIN LYTB1
XX
OS   Mycobacterium bovis AF2122/97
OC   Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
OC   Corynebacterineae; Mycobacteriaceae; Mycobacterium;
OC   Mycobacterium tuberculosis complex.
OX   NCBI_TaxID=233413;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..990
FT                   /organism="Mycobacterium bovis AF2122/97"
FT                   /strain="AF2122/97"
FT                   /mol_type="genomic DNA"
FT   CDS             complement(BX248345.1:305731..306720)
FT                   /transl_table=11
FT                   /gene="lytB1"
FT                   /locus_tag="Mb3414c"
FT                   /product="PROBABLE LYTB-RELATED PROTEIN LYTB1"
FT                   /note="Mb3414c, lytB1, len: 329 aa. Equivalent to Rv3382c,
FT                   len: 329 aa, from Mycobacterium tuberculosis strain H37Rv,
FT                   (100.0% identity in 329 aa overlap). Probable lytB1,
FT                   lytB-related protein, highly similar to many e.g.
FT                   Q9HVM7|LYTB_PSEAE|PA4557 from Pseudomonas aeruginosa (314
FT                   aa), FASTA scores: opt: 1048, E(): 2e-55, (53.2% identity
FT                   in 314 aa overlap); Q9JR39|LYTB|NMA0624|NMB1831 from
FT                   Neisseria meningitidis (serogroup A and B) (322 aa), FASTA
FT                   scores: opt: 1041, E(): 5.4e-55, (52.25% identity in 312 aa
FT                   overlap); P22565|LYTB_ECOLI|B0029 from Escherichia coli
FT                   strain K12 (316 aa), FASTA scores: opt: 1013, E(): 2.5e-53,
FT                   (51.45% identity in 311 aa overlap) (for more information
FT                   about lytB protein, see citation below);
FT                   Q9X781|LYTB_MYCLE|LYTB2|ML1938|MLCB1222.06c from
FT                   Mycobacterium leprae (332 aa), FASTA scores: opt: 979, E():
FT                   2.8e-51, (51.3% identity in 312 aa overlap); etc. Also
FT                   similar to Q9PAS9|XF2416 DRUG TOLERANCE PROTEIN from
FT                   Xylella fastidiosa (316 aa), FASTA scores: opt: 1043, E():
FT                   4.1e-55, (53.65% identity in 315 aa overlap). And similar
FT                   to O53458|Rv1110|LYTB2|MTV017.63 from Mycobacterium
FT                   tuberculosis (335 aa), FASTA scores: opt: 975, E():
FT                   4.9e-51, (51.3% identity in 312 aa overlap). BELONGS TO THE
FT                   LYTB FAMILY."
FT                   /db_xref="GOA:P0A5I3"
FT                   /db_xref="InterPro:IPR003451"
FT                   /db_xref="UniProtKB/Swiss-Prot:P0A5I3"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="CAD95586.1"
FT                   /translation="MAEVFVGPVAQGYASGEVTVLLASPRSFCAGVERAIETVKRVLDV
FT                   AEGPVYVRKQIVHNTVVVAELRDRGAVFVEDLDEIPDPPPPGAVVVFSAHGVSPAVRAG
FT                   ADERGLQVVDATCPLVAKVHAEAARFAARGDTVVFIGHAGHEETEGTLGVAPRSTLLVQ
FT                   TPADVAALNLPEGTQLSYLTQTTLALDETADVIDALRARFPTLGQPPSEDICYATTNRQ
FT                   RALQSMVGECDVVLVIGSCNSSNSRRLVELAQRSGTPAYLIDGPDDIEPEWLSSVSTIG
FT                   VTAGASAPPRLVGQVIDALRGYASITVVERSIATETVRFGLPKQVRAQ"
XX
SQ   Sequence 990 BP; 167 A; 277 C; 345 G; 201 T; 0 other; 3654612770 CRC32;
     atggctgagg tgttcgtggg accggtcgca cagggatacg cttcgggtga agtcacggtg        60
     ctgttggcgt cgccgcggtc gttttgcgcc ggtgtagagc gtgctatcga gacggtcaag       120
     cgagtgcttg acgtggccga aggcccggtg tatgtgcgca agcaaatcgt gcacaacact       180
     gttgtggttg ccgagttgcg ggaccgggga gcagtgttcg tcgaggatct cgacgagatt       240
     cccgatccgc cgccgccggg ggcggtcgtg gtgttctccg cgcatggggt ttccccggcg       300
     gtgcgcgcgg gcgctgatga gcggggactg caggtcgtcg acgcgacctg cccactggtg       360
     gcgaaagtcc acgctgaagc cgcacggttt gccgcgcgcg gtgacacggt ggtcttcatc       420
     gggcacgccg gacatgagga gaccgaaggc acgcttggcg tcgctccgcg gtcaacatta       480
     ttggtgcaga cacccgctga tgtggcagcg ttgaacctgc ccgagggtac ccagctatcg       540
     tatctgaccc agacaaccct ggcacttgat gaaactgccg atgtcattga tgcgctgcgc       600
     gcgaggtttc cgacgttggg ccaacccccc tctgaagaca tctgctatgc caccacgaac       660
     agacagcgtg cgctgcaatc gatggtcggt gaatgtgacg ttgtgttggt gattggctcg       720
     tgcaattcgt cgaattcgcg gcgtctggtc gagttggcgc agcgaagtgg gacgccggcc       780
     tacttgattg acgggcctga tgacattgag cccgaatggc tgtcgtcggt ctcgacgatc       840
     ggtgtcaccg cgggagcctc cgcgccgcca cgactggtgg ggcaggtgat tgatgcactt       900
     cgcggatacg cctcgatcac cgtggtggaa cgctcgatag cgaccgagac ggtgcgattc       960
     ggccttccca aacaggttcg cgcgcaatga                                        990
//
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