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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAD54146; SV 1; linear; genomic DNA; STD; INV; 1179 BP.
XX
PA   Z22180.2
XX
DE   Caenorhabditis elegans C. elegans protein K11H3.1b, confirmed by transcript
DE   evidence
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis.
OX   NCBI_TaxID=6239;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1179
FT                   /organism="Caenorhabditis elegans"
FT                   /chromosome="III"
FT                   /strain="Bristol N2"
FT                   /mol_type="genomic DNA"
FT                   /clone="K11H3"
FT   CDS             complement(join(Z22180.2:22170..22266,
FT                   Z22180.2:22798..22934,Z22180.2:22991..23449,
FT                   Z22180.2:23803..23829,Z22180.2:23957..24097,
FT                   Z22180.2:24507..24687,Z22180.2:24854..24942,
FT                   Z22180.2:26268..26315))
FT                   /gene="gpdh-2"
FT                   /locus_tag="K11H3.1b"
FT                   /standard_name="K11H3.1b"
FT                   /product="C. elegans protein K11H3.1b, confirmed by
FT                   transcript evidence"
FT                   /note="C. elegans GPDH-2 protein; contains similarity to
FT                   Pfam domains PF01210 (NAD-dependent glycerol-3-phosphate
FT                   dehydrogenase N-terminus) , PF07479 (NAD-dependent
FT                   glycerol-3-phosphate dehydrogenase C-terminus) contains
FT                   similarity to Interpro domains IPR006168 (NAD-dependent
FT                   glycerol-3-phosphate dehydrogenase), IPR017751
FT                   (NAD-dependent glycerol-3-phosphate dehydrogenase,
FT                   eukaryotic), IPR006109 (NAD-dependent glycerol-3-phosphate
FT                   dehydrogenase, C-terminal), IPR013328 (Dehydrogenase,
FT                   multihelical), IPR011128 (NAD-dependent
FT                   glycerol-3-phosphate dehydrogenase, N-terminal), IPR016040
FT                   (NAD(P)-binding domain)"
FT                   /db_xref="GOA:P34517"
FT                   /db_xref="InterPro:IPR006109"
FT                   /db_xref="InterPro:IPR006168"
FT                   /db_xref="InterPro:IPR008927"
FT                   /db_xref="InterPro:IPR011128"
FT                   /db_xref="InterPro:IPR013328"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="InterPro:IPR017751"
FT                   /db_xref="UniProtKB/Swiss-Prot:P34517"
FT                   /db_xref="WormBase:WBGene00010778"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="CAD54146.1"
FT                   /translation="MSSSRIPQCENSSRLSLSSIFRYFGTTSTIATMSPKKVTIIGSGN
FT                   WGSAIARIVGSTTKSFPDEFDPTVRMWVFEEIVNGEKLSEVINNRHENIKYLPGKVLPN
FT                   NVVAVTDLVESCEGSNVLVFVVPHQFVKGICEKLVGKIPADTQAISLIKGISFDKTNQG
FT                   VSTEKRGGLKLISEEIKEILKIEVSVLMGANLAPEVANDNFCEATIGCKRKAEDGPLLK
FT                   KLFHTDNFRINVVEDAHTVELCGALKNVVACAAGFTDGLGYGDNTKAAVIRLGLMETTK
FT                   FVEHYYPGSNLQTFFESCGIADLITTCYGGRNRKVCEAFVKTGKSMAEVEKELLNGQSA
FT                   QGPLTAEEVYLMMHKTGLDAKFPLFTAVHKICAGEMKPAELVDCLRNHPEHM"
XX
SQ   Sequence 1179 BP; 349 A; 224 C; 271 G; 335 T; 0 other; 2311962090 CRC32;
     atgtcttctt cgagaattcc tcaatgtgag aactcttcac gattgtcgct tagttcaatt        60
     tttcgttact ttggaaccac atcaacaatc gccacaatga gtccaaagaa ggttacaatt       120
     attggatctg gaaattgggg atccgccatt gccagaattg ttggaagcac gacaaaatcc       180
     ttcccagatg agtttgatcc aaccgtccgt atgtgggttt tcgaggagat tgttaatgga       240
     gagaagctgt cagaagttat taataatcgt cacgagaata ttaagtatct ccctggaaaa       300
     gttcttccta ataatgtggt agccgtcact gacctcgttg aatcatgtga aggttcaaat       360
     gttcttgtct tcgttgttcc acatcaattc gtcaaaggaa tctgtgaaaa gcttgttgga       420
     aaaattccag ctgatacaca agctatttct ttgattaagg gaatttcctt cgacaaaaca       480
     aatcagggag tttcaacgga aaagcgtgga ggactgaagc tcatctcgga ggaaatcaaa       540
     gagattctca aaattgaagt cagcgtgttg atgggagcta atttggctcc agaagtggca       600
     aatgacaatt tctgtgaagc taccatcgga tgtaagagga aagctgaaga tggaccactt       660
     ctcaagaagc tcttccatac tgataacttc cgaatcaatg ttgttgaaga tgcacatact       720
     gttgaattgt gtggtgctct caaaaacgtc gttgcttgtg ctgctggatt tactgatggt       780
     cttggttatg gagataacac aaaggcagca gttattcgat tgggtctcat ggaaactacc       840
     aaattcgttg aacattacta tccaggatca aatcttcaaa cattcttcga atcatgtgga       900
     attgctgatc tcatcacaac ttgctatgga ggtcgtaatc gtaaggtgtg cgaggcgttc       960
     gtcaaaactg gtaaatcgat ggctgaagtt gagaaagaac tgttgaatgg gcaaagtgct      1020
     caaggaccat tgacagctga ggaggtttat ttgatgatgc acaagactgg attggatgct      1080
     aaattcccat tgttcacagc cgttcacaaa atctgcgccg gtgagatgaa gcctgccgaa      1140
     ctcgtcgatt gtctcagaaa ccatccagaa cacatgtaa                             1179
//
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