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EBI DbfetchID CAC19891; SV 1; linear; genomic DNA; STD; PRO; 7104 BP. XX PA AJ011301.1 XX DE Clostridium difficile toxin B XX OS Clostridium difficile OC Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; OC Clostridium. OX NCBI_TaxID=1496; XX FH Key Location/Qualifiers FH FT source 1..7104 FT /organism="Clostridium difficile" FT /strain="8864" FT /mol_type="genomic DNA" FT CDS AJ011301.1:2104..9207 FT /transl_table=11 FT /gene="tcdB" FT /product="toxin B" FT /function="UDP-glucosylates small GTP-binding protein" FT /db_xref="HSSP:1GVM" FT /db_xref="InterPro:IPR018337" FT /db_xref="UniProtKB/TrEMBL:Q9EXR0" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="CAC19891.1" FT /translation="MSLVNRKQLEKMANVRFRVQEDEYVAILDALEEYHNMSENTVVEK FT YLKLKDINSLTDTYIDTYKKSGRNKALKKFKEYLVTEILELKNSNLTPVEKNLHFIWIG FT GQINDTAINYINQWKDVNSDYNVNVFYDSNAFLINTLKKTIIESASNDTLESFRENLND FT PEFNHTAFFRKRMQIIYDKQQNFINYYKAQKEENPDLIIDDIVKTYLSNEYSKDIDELN FT AYIEESLNKVTENSGNDVRNFEEFKTGEVFNLYEQELVERWNLAGASDILRVAILKNIG FT GVYLDVDMLPGIHPDLFKDINKPDSVKTAVDWEEMQLEAIMKYKEYIPEYTSKHFDTLD FT EEVQSSFESVLASKSDKSEIFLPLGGIEVSPLEVKVAFAKGSIIDQALISAKDSYCSDL FT LIKQIQNRYKILNDTLGPIISQGNDFNTTMNNFGESLGAIANEENISFIAKIGSYLRVG FT FYPEANTTITLSGPTIYAGAYKDLLTFKEMSIDTSILSSELRNFEFPKVNISQATEQEK FT NSLWQFNEERAKIQFEEYKKNYFEGALGEDDNLDFSQNTVTDKEYLLEKISSSTKSSER FT GYVHYIVQLQGDKISYEAACNLFAKNPYDSILFQKNIEDSEVAYYYNPTDSEIQEIDKY FT RIPDRISDRPKIKLTLIGHGKAEFNTDIFAGLDVDSLSSEIETILDLAKADISPKSIEI FT NLLGCNMFSYSVNVEETYPGKLLLRVKDKVSELMPSISQDSIIVSANQYEVRINSEGRR FT ELLDHSGEWINKEESIIKDISSKEYISFNPKENKIIVKSKNLPELSTLLQEIRNNSNSS FT DIELEEKVMLAECEINVISNIETQVVEERIEEAKSLTSDSINYIKNEFKLIESISDALY FT DLKQQNELEESHFISFEDISKTDEGFSIRFIDKETGESIFVETEKAIFSEYANHITEEI FT SKLKDTIFDTVNGKLVKKVTLDATHEVNTLNAAFFIQSLIGYNSSKESLSNLSVAMKVQ FT VYAQLFSTGLNTITDAAKVVELVSTALDETIDLLPTLSEGLPVIATIIDGVSLGASIKE FT LSETSDPLLRQEIEAKIGIMAVNLTAATTAIITSSLGIASGFSILLVPLAGISAGIPSL FT VNNELILRAEAKNVVDYFGHISLAESEGAFTLLDDKIMMPQDDLVISEIDFNNNSITLG FT KCEIWRMEGGSGHTVTDDIDHFFSAPSTTYREPYLSIYDVLDVKEEELDLSKDLMVLPN FT APDRIFGWERGWTPGLRSLENDGTKLLDRIRDHYEGQFYWRFFAFIADSVITKLKPRYE FT DTNIRISLDSNTRSFIVPVITTEYIREKLSYSFYGSGGTYALSLSQYNMNINIELNEND FT TWVIDVDNVVRDVTIESDKIKKGDLIENILSKLSIEDNKIILDNHEINFSGTLNGGNGF FT VSLTFSILEGINAVIEVDLLSKSYKVLISGELKTLMANSNSVQQKIDYIGLNSELQKNI FT PYSFMDDEGKENGFINCFTKEGLFVSELSDVVLIIKVYMDNSKPPFGYYSNDLKDVKVI FT TKDDVIIITGYYLKDDIKISLSFTIQDKNTIKLNGVYLDENGVAEILKFMNKKGSTNTS FT DSLMSFLESMNIKSIFIKSLKSNAKLILDTNFIISGTTFIGQFEFICDKDNNIQPYFIK FT FNTLETKYTLYVGNRQNMIVEPNYNLDDSGDISSTVINFSQKYLYGIDSCVNKVVISPG FT IYTDEINITPVHEANNTYPEVIVLDTNYISEKINININDLSIRYVWSNDGSDFILMSTD FT EENKVSQVKIRFTNVFKGNTISDKISFNFSDKQDISINKIISTFTPSYYVEGLLNYDLG FT LISLYNEKFYINNLGMMVSGLVYINDSLYYFKPPIKNLITGFTTIGDDKYYFNPDNGGP FT ASVGETIIDGKNYYFSQNGVLQTGVFSTEDGFKYFAPADTLDENLEGEAIDFTGKLIID FT ENVYYFGDNYRAAIEWQTLDDEVYYFSTDTGRAFKGLNQIGDDKFYFNSDGIMQKGFVN FT INDKTFYFDDSGVMKSGYTEIDGRYFYFAENGEMQIGVFNTADGFKYFAHHDEDLGNEE FT GEALSYSGILNFNNKIYYFDDSFTAVVGWKDLEDGSKYYFDENTAEASIGISIINDGKY FT YFNDSGIMQIGFVTINNEVFYFSDSGIVESGMQNIDDNYFYISENGLVQIGVFDTSDGY FT KYFAPANTVNDNIYGQAVEYSGLVRVNEDVYSFGESYTIETGWIYDSENESDKYYFDPE FT AKKAYKGINVIDDIKYYFDENGIMRTGLITFEDNHYYFNEDGEMQYGYLNIEDKMFYFS FT EDGIMQIGVFNTPDGFKYFAHQNTLDENFEGESINYTGWLDLDEKRYYFTDEYIAATGS FT VIIDGEEYYFDPDTAQLVISE" XX SQ Sequence 7104 BP; 2817 A; 751 C; 1203 G; 2333 T; 0 other; 2467886318 CRC32; atgagtttag ttaatagaaa acagttagaa aaaatggcaa atgtaagatt tcgtgttcag 60 gaagatgaat atgtagcaat attagatgca ttagaagaat atcataatat gtcagaaaat 120 actgtagttg aaaagtatct aaaattaaaa gatataaaca gtttaacaga tacctatata 180 gatacatata aaaaatctgg tcgaaataaa gccttaaaaa aatttaaaga gtacttagtt 240 acagagatat tagaattaaa aaatagcaat ttaactccag tcgagaaaaa tttacatttt 300 atatggattg gagggcaaat aaatgatact gctattaatt atataaatca atggaaagat 360 gtaaatagtg actataatgt taatgttttt tatgatagta atgcattttt gataaacaca 420 ttgaaaaaaa ctataataga atcagcatca aatgatactc ttgaatcatt tagagaaaat 480 ttaaatgatc ctgaatttaa ccacactgca tttttcagaa aacgtatgca aataatctat 540 gataaacagc aaaatttcat aaattactat aaagctcaaa aagaagaaaa tcctgacctt 600 ataattgatg atattgtaaa gacatatctt tcaaacgagt attcaaagga tatagatgaa 660 cttaatgctt atattgaaga gtcattaaac aaagtcacag aaaatagtgg aaatgatgtt 720 agaaactttg aagaatttaa aactggagaa gtattcaatt tatatgaaca agagttagta 780 gaaagatgga atcttgctgg tgcatccgat atattaagag tcgctatatt gaaaaatatt 840 ggtggagtct atctagatgt tgatatgttg ccaggaatac acccagattt atttaaagat 900 ataaataagc ctgattcagt aaagacagct gtagattggg aagagatgca gttagaagcc 960 ataatgaaat ataaagaata tataccagaa tatacttcaa aacattttga tacattggat 1020 gaagaagttc aaagtagctt tgaatctgtt ctagcttcta agtctgataa gtcagaaata 1080 tttttaccac taggaggtat agaggtatca cctttagaag taaaagttgc atttgccaaa 1140 ggttctatta tagatcaagc tctaatttct gcaaaagact catattgtag tgacttacta 1200 ataaaacaaa tccaaaacag atataagata ctgaatgata ctttaggtcc aattattagt 1260 caaggtaatg attttaatac tacaatgaac aattttggtg aaagtttggg agctatagct 1320 aatgaagaga atataagttt tatagcaaaa atcggaagtt atttaagggt tggattttat 1380 cctgaagcta atactacaat tactttaagt ggtcctacaa tatatgcagg agcttataaa 1440 gatttattaa catttaaaga gatgagcata gatacttcta tattgtcatc tgagttaaga 1500 aattttgaat ttcctaaggt taatatatct caagcaacag aacaagagaa aaatagttta 1560 tggcaattta atgaagaaag agctaaaatt caatttgaag aatacaagaa aaattatttt 1620 gaaggtgcac ttggagaaga tgataatctt gatttttctc aaaatactgt aactgacaaa 1680 gaatatcttt tagaaaagat ctcttcatca acgaagagtt cagaaagagg atatgttcat 1740 tatattgttc aattacaagg agataaaatt agctatgaag cagcatgtaa cttatttgca 1800 aaaaatcctt atgacagtat actatttcaa aaaaatatag aagattcaga agtagcatat 1860 tactataatc ctacagatag tgaaatacaa gaaattgata agtatagaat tcctgataga 1920 atctctgata gacctaagat taaattgaca cttattggtc atggcaaagc tgagtttaat 1980 actgatatat ttgcaggtct tgatgtggat tcattatctt cagaaataga aacaatatta 2040 gatttagcta aagcagatat ttctcctaaa tctatagaaa taaacttact gggatgtaac 2100 atgtttagct attctgtaaa tgtagaagag acttatcctg ggaaattatt acttagagtt 2160 aaagataaag tatcagaatt aatgccatct ataagtcaag actctattat agtaagtgca 2220 aatcaatatg aagttagaat taatagtgaa ggaagaagag aattattaga ccattctggt 2280 gaatggataa acaaagaaga aagtattata aaggatattt catcaaaaga atatatatca 2340 tttaatccta aagaaaataa aattatagta aaatctaaaa atttacccga attatctaca 2400 ttattacaag aaattagaaa caattctaat tcaagtgata ttgaactaga agaaaaagta 2460 atgttagcag aatgtgagat aaatgttatt tcaaatatag agacacaagt ggtagaagaa 2520 aggattgaag aagctaaaag cttaacttct gactctatta attatataaa gaatgaattt 2580 aaactaatag aatctatttc tgatgcacta tacgatttaa aacaacagaa tgaattagaa 2640 gagtctcatt ttatatcttt tgaggatata tcgaagactg atgaaggctt tagtataaga 2700 tttattgata aagaaactgg agaatctata tttgtagaaa ctgaaaaggc aatattctct 2760 gaatatgcta atcatataac tgaagaaatt tctaagttaa aagatactat atttgatact 2820 gtaaatggta agttggtgaa aaaagtaact ttagatgcta cacatgaagt gaatacttta 2880 aatgctgcat tttttataca atcattaatt ggatataata gttctaaaga atctcttagt 2940 aatttaagtg tagcaatgaa agttcaagtt tatgctcaat tatttagtac tggtttaaat 3000 accattacag atgcggctaa agttgttgaa ttagtatcaa ctgcactaga tgaaactata 3060 gatttacttc ctacattatc tgaaggatta cctgtaattg ctactattat agatggtgta 3120 agtttaggtg catcaattaa agagttgagt gaaacaagtg acccattatt aagacaagaa 3180 atagaagcaa aaataggtat aatggcagta aatttaacag cagctacaac tgcaattatt 3240 acttcatctt taggaatagc aagtggattt agtatacttt tagttcctct agcagggatt 3300 tcagcaggaa tcccaagttt agtaaataat gaacttatat tacgagctga ggcaaaaaat 3360 gtcgtagatt attttggcca tatttcatta gctgaatctg aaggagcatt tactttgtta 3420 gatgataaaa taatgatgcc acaagatgat ttagtaatat ctgaaataga ctttaataac 3480 aattcaataa ctttaggtaa atgtgaaata tggagaatgg aaggtggttc aggtcatact 3540 gtaaccgatg atatagatca cttcttctca gcaccatcaa caacatatag ggaaccatat 3600 ttatctatat atgatgtatt agatgtaaaa gaggaagaac ttgatttatc aaaagattta 3660 atggtattgc ctaatgcccc agatagaatc tttggctggg aaagaggatg gacgccaggt 3720 ttaagaagct tagaaaatga tggtacaaaa ctattagacc gtataagaga tcattatgaa 3780 gggcagtttt attggagatt tttcgctttt atagctgatt ctgtaataac aaaattaaaa 3840 ccaagatatg aagatactaa tataagaata agtttagaca gtaatactag aagttttata 3900 gttccagtaa taactacaga atatataaga gaaaaattat catattcttt ttatggctca 3960 ggaggaactt atgcattatc tctttctcaa tacaatatga atataaacat agaattaaat 4020 gaaaatgata cttgggttat agatgtcgac aatgtcgtaa gagatgtcac tatagaatct 4080 gataaaatta aaaaaggaga tttaatagaa aatattttat ctaaattaag tattgaagac 4140 aataaaatta ttttagataa tcatgaaatt aatttctctg gaacattaaa tggaggtaat 4200 ggatttgtat ctttaacatt ctcaatctta gaaggaataa atgcagttat agaagttgat 4260 ttattatcta aatcatataa agttcttatt tctggtgaac taaaaacatt gatggcaaat 4320 tcaaattctg ttcaacagaa aatagattat ataggattga atagcgaatt acaaaaaaat 4380 ataccttata gttttatgga tgatgaagga aaagaaaatg gatttattaa ttgttttaca 4440 aaagaaggtt tatttgtatc tgaattatct gatgtagttc tcataattaa agtttatatg 4500 gacaatagta aacctccatt tggatattat agtaatgatt tgaaagatgt taaagttata 4560 actaaagatg acgttattat aataacagga tattatttaa aagatgatat aaaaatctct 4620 ctttctttta ctatacaaga taaaaatact ataaaattaa atggagtata tttagatgaa 4680 aatggagtag ctgaaatatt gaaatttatg aataaaaaag gtagtacaaa tacttcagat 4740 tctttaatga gctttttaga aagtatgaac ataaaaagta ttttcataaa atccttaaaa 4800 tctaatgcta agcttatatt agatactaat tttataataa gtggtactac ttttattggt 4860 caatttgagt ttatttgtga taaagataat aatatacaac catatttcat taagtttaat 4920 acactagaaa ctaaatatac tctatatgta ggtaatagac aaaatatgat agtagaacca 4980 aattataatt tagatgattc tggagacata tcttcaactg tcattaattt ttctcagaaa 5040 tacctttatg gaatagacag ttgtgttaat aaagttgtaa tttcacccgg gatttataca 5100 gatgaaataa acataacacc tgtacatgaa gcaaataata cttatccaga agtgattgta 5160 ttagatacaa attatataag tgaaaaaatc aatattaata tcaatgattt atctatacga 5220 tatgtatgga gtaatgatgg aagtgatttt attcttatgt caactgatga agagaacaag 5280 gtatcacaag ttaaaataag atttactaat gtttttaaag gtaatactat atcagataag 5340 atatctttta attttagtga caagcaagat atatctataa ataaaattat ttcaacattt 5400 acaccttcat attatgtgga aggattactt aattatgatt taggtctgat ttctttatac 5460 aatgagaaat tttatattaa taatttggga atgatggtgt ctgggttagt atatattaat 5520 gattcattat attatttcaa accaccaata aagaacttga taactggatt tacaactata 5580 ggcgatgata aatactactt taatccagat aatggaggac ctgcttcagt tggagaaaca 5640 ataattgatg gcaaaaacta ctatttcagc caaaatggag tgttacaaac aggtgtattt 5700 agtacagaag atggatttaa atattttgct ccagcagata cacttgatga aaatctagaa 5760 ggtgaagcaa ttgattttac tggcaaacta attattgatg aaaatgtata ttattttgga 5820 gataattata gagcagctat agaatggcaa acattagatg atgaagtgta ctattttagc 5880 acagatacag gtagagcttt taaagggcta aatcaaatag gtgatgataa attctatttc 5940 aactctgatg gtattatgca aaaaggattt gttaatataa atgataagac attttatttt 6000 gatgattctg gtgtgatgaa gtcaggatat actgaaatag atggaagata tttttacttt 6060 gctgagaatg gagaaatgca aataggagta tttaatacag cagatggatt taaatatttt 6120 gctcatcatg atgaagattt aggaaatgaa gaaggtgaag cactttcata ttctggtata 6180 cttaatttta acaataagat ttattatttt gatgattcat ttacagcagt agttggatgg 6240 aaggatttag aagatggttc aaaatattac tttgatgaaa atacagcaga agcatctata 6300 ggtatatcaa taattaatga tgggaaatat tattttaatg attctggaat catgcaaatt 6360 ggatttgtca caataaataa tgaagtattt tatttctctg attctggaat agtagaatct 6420 ggaatgcaaa atatagatga taactatttc tatataagtg aaaatggtct agttcaaatt 6480 ggtgtatttg acacttcaga tggatataaa tactttgcac cagctaatac tgtaaatgat 6540 aatatttatg gacaagcagt tgaatatagt ggtttagtta gagttaatga agatgtgtat 6600 agttttggag aatcatatac aattgaaact ggatggatat atgattcaga aaacgaaagt 6660 gataaatatt atttcgatcc agaagctaaa aaagcatata aaggtatcaa tgtaattgat 6720 gatataaaat actattttga tgagaatggc ataatgagaa caggtcttat aacatttgaa 6780 gataatcatt actattttaa tgaagatggt gaaatgcaat atggttatct aaatatagaa 6840 gataagatgt tctactttag tgaagatggt attatgcaga ttggagtatt taatacacca 6900 gatggattta aatattttgc acatcaaaat actttagatg agaattttga gggagaatca 6960 ataaactata ctggttggtt agatttagat gaaaagagat attattttac agatgaatat 7020 atcgcagcaa ctggttcagt tattattgat ggtgaggagt attattttga tcctgataca 7080 gctcaattag tgattagtga atag 7104 // |
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