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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAC01830; SV 1; linear; genomic DNA; STD; PLN; 1419 BP.
XX
PA   AL391146.1
XX
DE   Arabidopsis thaliana (thale cress) pectate lyase-like protein
XX
OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
OX   NCBI_TaxID=3702;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1419
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="5"
FT                   /variety="Columbia"
FT                   /mol_type="genomic DNA"
FT   CDS             join(AL391146.1:80715..80908,AL391146.1:81035..81788,
FT                   AL391146.1:81882..82127,AL391146.1:82207..82431)
FT                   /gene="F2G14_230"
FT                   /product="pectate lyase-like protein"
FT                   /note="strong similarity to pectate lyase LAT59, tomato,
FT                   PIR:S27098"
FT                   /db_xref="GOA:Q9LFP5"
FT                   /db_xref="InterPro:IPR012334"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9LFP5"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="CAC01830.1"
FT                   /translation="MEMVRLSKLMFTFCIAVLIPTIRGNISELDEYWSQRADEAREFTL
FT                   QAYHSDPYEIVDHFHERHYDNSTDVTTPEEDGDAKPEEEEKEFIEMLGSSTNSTRRSLR
FT                   GKGKGKWSKLKGPCTASNPIDKCWRCRSDWAKRRKKLTRCVRGFGHRTTGGKRGRIYVV
FT                   TSNLDEDMVNPKPGTLRHAVIQKEPLWIIFKNDMSIRLNQELLINSHKTIDARGANVHV
FT                   AHGAGITMQFVKNVIIHGLHIHHISESSGGMIRDSVDHFGMRTRADGDGLSIYGSSNIW
FT                   LDHISMSKCQDGLIDAIVGSTGITISNSHFTHHNDVMLLGAQNTNEADKHMQVTVAYNH
FT                   FGKGLVQRMPRIRWGFVHVVNNDYTHWELYAIGGSQGPTILSHGNRFIAPPHKPHYREV
FT                   TKRDYASEDEWKHWNWRSDKDVFMNGAYFRQSGNPQYKCAHTRQQMIKPKNGLAVSKLT
FT                   KYAGALDCRVGRRC"
XX
SQ   Sequence 1419 BP; 425 A; 300 C; 355 G; 339 T; 0 other; 3430954526 CRC32;
     atggagatgg ttaggctgtc aaagttgatg tttacgtttt gtattgccgt tctaattccg        60
     accattcgag gtaacatttc tgagctggac gagtattggt cgcaacgagc cgacgaagcc       120
     agagaattca ctcttcaagc ttaccattct gatccttacg aaatcgtcga tcactttcac       180
     gagcgtcact acgacaactc tactgatgtt acaacgcctg aggaagatgg tgatgcgaag       240
     cccgaagagg aggaaaaaga gttcattgaa atgctcggaa gctcgacgaa cagcaccaga       300
     cgaagcctaa gaggtaaagg caagggaaaa tggagtaagc taaagggacc ttgtaccgca       360
     agtaacccca tagataaatg ttggcgttgc cgatcggatt gggctaagcg tcggaagaag       420
     cttacacgtt gtgtccgagg gtttggtcac aggacgaccg gaggaaaacg aggacgcatc       480
     tatgtggtta caagcaacct cgacgaagac atggtgaacc ctaaaccggg gacattgcgt       540
     catgccgtga ttcagaagga acctctgtgg atcattttca agaacgatat gagcattcgg       600
     ttaaaccaag agcttctgat taatagccac aagactatcg atgcacgagg agctaatgtc       660
     catgtagccc atggcgcagg gatcacaatg cagtttgtga aaaatgtcat catccatgga       720
     ctgcatattc accacatttc tgagagtagc ggtggtatga tccgagactc tgtagaccat       780
     ttcggaatga ggactagagc tgatggagat ggtctatcga tttatggttc gtctaacatt       840
     tggcttgacc atatctcgat gtcgaaatgt caagatggac tcatcgatgc cattgttgga       900
     tccactggca ttacaatctc caactcccac ttcactcacc acaacgatgt gatgttgctt       960
     ggtgctcaaa acacgaatga agcggacaaa catatgcaag tcacagtggc ttataaccat      1020
     tttggtaaag gacttgtaca gagaatgcct aggatccgat ggggatttgt tcatgttgtg      1080
     aacaacgact acactcattg ggagctttac gcgatcggag gtagtcaagg tcctacgatt      1140
     ctcagccatg gaaaccgatt catagctcct ccacacaaac cgcattacag agaggtgaca      1200
     aagagagatt atgcttcgga ggacgagtgg aaacactgga actggagatc tgataaagat      1260
     gtattcatga acggtgctta tttcagacaa tctggtaatc ctcaatacaa atgtgcacac      1320
     acaagacaac aaatgatcaa accgaaaaat ggattggctg tttcaaagct gaccaaatat      1380
     gccggagcac ttgattgcag agtcgggaga cgctgttag                             1419
//
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