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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAB81152; SV 1; linear; genomic DNA; STD; PLN; 1563 BP.
XX
PA   AL161510.2
XX
DE   Arabidopsis thaliana (thale cress) putative xylan endohydrolase
XX
OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
OX   NCBI_TaxID=3702;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1563
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="4"
FT                   /variety="Columbia"
FT                   /mol_type="genomic DNA"
FT   CDS             complement(join(AL161510.2:126146..126435,
FT                   AL161510.2:127316..128159,AL161510.2:128238..128666))
FT                   /gene="AT4g08160"
FT                   /product="putative xylan endohydrolase"
FT                   /note="similarity to"
FT                   /db_xref="GOA:Q9SYE3"
FT                   /db_xref="HSSP:1I1W"
FT                   /db_xref="InterPro:IPR013781"
FT                   /db_xref="UniProtKB/TrEMBL:Q9SYE3"
FT                   /protein_id="CAB81152.1"
FT                   /translation="MARDTLGPHKPLGGNYIVVTNRTQTWMGPAQMITDKIKLFLTYQI
FT                   SAWVKLGVGVSGSSMSPQNVNIALSVDNQWVNGGQVEVTVGDTWHEIAGSFRLEKQPQN
FT                   VMVYVQGPGAGIDLMIAALQIFPVDRRERVRCLKRQVDEVRKRDIVLKFSGLNDDESFD
FT                   LFPYIVKVKQTYNSFPVGTCINRTDIDNEDFVDFFTKNFNWAVFGNELKWYATEAERGK
FT                   VNYQDADDMLDLCIGNNINVRGHCIFWEVESTVQPWVRQLNKTDLMNAVQKRLTDLLTR
FT                   YKGKFKHYDVNNEMLHGSFYQDRLGKGVRALMFNIAHKLDPSPLLFVNDYHVEDGDDPR
FT                   SSPEKYIKLVLDLEAQGATVGGIGIQGHIDSPVGAIVCSALDMLSVLGRPIWFTELDVS
FT                   SSNEYVRGEDLEVMLWEAFAHPSVEGIMLWGFWELSMSRENANLVEGEGEVNEAGKRFL
FT                   EVKQEWLSHAYGIINDESEFTFRGYHGTYAVEICTPAGIVLKTFVVEKGDTPLVISIDL
FT                   SSL"
XX
SQ   Sequence 1563 BP; 458 A; 294 C; 388 G; 423 T; 0 other; 1193419951 CRC32;
     atggcgagag acacgctagg tcctcacaaa cctctaggtg gaaactacat cgttgtgact        60
     aacagaacgc agacttggat gggtcctgct cagatgataa ccgataaaat caaactcttc       120
     ttgacatatc aaatctcagc ttgggtcaag cttggtgtgg gagtaagtgg tagtagtatg       180
     agtcctcaga atgtgaacat tgcacttagc gtcgataacc aatgggtcaa cggaggacaa       240
     gtcgaggtca cagttggtga tacatggcat gaaatagccg gatcttttag gctagagaaa       300
     cagccacaaa acgttatggt ttacgttcaa ggtcctggag ctggcattga tttgatgatc       360
     gcggctctgc agattttccc cgtggatcgt cgagaacgtg tcagatgtct caaaagacaa       420
     gttgatgagg tacgtaagcg cgacatcgtg ttgaaattct caggactaaa cgacgacgaa       480
     tcctttgatt tgtttcctta catagtgaaa gtgaaacaaa catacaacag tttcccagta       540
     ggaacatgca tcaacagaac agacatagac aatgaagact ttgtagattt cttcacaaag       600
     aactttaact gggcagtgtt cggaaacgag ctcaaatggt acgcgacaga agcggaacgt       660
     ggaaaggtaa attaccaaga cgcagacgac atgttagatc tctgcattgg caacaacata       720
     aacgttagag gacattgtat cttctgggaa gttgaatcca cagttcagcc atgggttcgc       780
     cagcttaaca aaaccgatct tatgaacgcg gtacaaaagc gtctcacgga tcttttgacg       840
     cggtacaaag gtaaattcaa gcactatgat gtcaacaacg agatgcttca tggttctttc       900
     tatcaagata gacttggaaa aggtgtaaga gcactcatgt tcaatattgc acataagctt       960
     gatccatctc ctttgctttt cgttaacgat tatcatgttg aggacgggga tgacccgcgt      1020
     tcgtctcccg agaagtatat aaaacttgta cttgatttgg aagctcaagg agcaactgta      1080
     ggagggattg ggatccaagg acatatagat agtcctgttg gagctattgt ttgttctgct      1140
     cttgatatgc tctctgttct tggtcgtccc atttggttca cagagcttga tgtctcttcg      1200
     agtaatgaat atgttagggg agaggatctt gaagttatgt tgtgggaagc atttgctcac      1260
     ccttcagttg aaggaataat gttatggggg ttctgggagc tatctatgag tagagagaac      1320
     gcgaatctgg tggagggaga aggagaagta aacgaagccg gaaaaagatt tttagaggtg      1380
     aaacaagaat ggttatctca tgcatatggg atcatcaatg atgagtcaga gttcacattc      1440
     agaggctacc atgggactta tgccgtcgaa atttgtactc cagctgggat tgttctcaaa      1500
     acgttcgttg tcgaaaaagg agacactcca cttgttatct ccattgatct ctcttctttg      1560
     tga                                                                    1563
//
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