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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAB80517; SV 1; linear; genomic DNA; STD; PLN; 1581 BP.
XX
PA   AL161593.2
XX
DE   Arabidopsis thaliana (thale cress) phosphoinositide-specific phospholipase
DE   C
XX
OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
OX   NCBI_TaxID=3702;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1581
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="4"
FT                   /variety="Columbia"
FT                   /mol_type="genomic DNA"
FT   CDS             join(AL161593.2:129764..129958,AL161593.2:130044..130240,
FT                   AL161593.2:130326..130461,AL161593.2:130547..130935,
FT                   AL161593.2:131034..131151,AL161593.2:131220..131450,
FT                   AL161593.2:131526..131840)
FT                   /gene="AT4g38530"
FT                   /product="phosphoinositide-specific phospholipase C"
FT                   /note="frameshifts at positions 32690 and 32710 cause a
FT                   different frame in the last exon; gDNA sequence was
FT                   confirmed"
FT                   /note="contains EST gb:AA720033"
FT                   /db_xref="GOA:Q56W08"
FT                   /db_xref="HSSP:1QAS"
FT                   /db_xref="InterPro:IPR017946"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q56W08"
FT                   /func_characterised="similar sequence"
FT                   /protein_id="CAB80517.1"
FT                   /translation="MSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHL
FT                   NAFYRYLFSDTNSPLPMSGQVHHDMKAPLSHYFVYTGHNSYLTGNQVNSRSSVEPIVQA
FT                   LRKGVKVIELDLWPNPSGNAAEVRHGRTLTSHEDLQKCLTAIKDNAFHVSDYPVIITLE
FT                   DHLPPKLQAQVAKMLTKTYRGMLFRRVSESFKHFPSPEELKGKILISTKPPKEYLESKT
FT                   VHTTRTPTVKETSWNRVANKILEEYKDMESEAVGYRDLIAIHAANCKDPSKDCLSDDPE
FT                   KPIRVSMDEQWLDTMVRTRGTDLVRFTQRNLVRIYPKGTRVDSSNYDPHVGWTHGAQMV
FT                   AFNMQGHGKQLWIMQGMFRGNGGCGYVKKPRILLDEHTLFDPCKRFPIKTTLKVKIYTG
FT                   EGWDLDFHHTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLS
FT                   VPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGVRAVRLHDRTGKAYKNTRLLVSF
FT                   ALDPPYTFR"
XX
SQ   Sequence 1581 BP; 452 A; 361 C; 379 G; 389 T; 0 other; 3782615965 CRC32;
     atgtctttcg atgagcttct aagatttgtg agtgaagtcc aaggagaacg gcacgcaggg        60
     ttggactacg tgcaagatat cttccacagc gttaaacacc acaacgtttt tcatcaccat       120
     ggacttgttc atctcaacgc cttctatcgc tacctcttca gcgataccaa ctctcctctt       180
     cccatgtctg gccaggtgca tcatgacatg aaggcgccgt tatcgcatta ctttgtgtac       240
     acgggacata actcttactt gactgggaac caagtgaaca gcagaagcag cgtagaaccg       300
     atcgtgcagg ctctcagaaa aggcgtaaaa gtgatcgagc tcgacttatg gcctaatcct       360
     tcagggaacg ctgctgaagt tcgtcatggc aggacgctta cttcgcatga agatttgcag       420
     aaatgtctaa ccgccattaa ggataacgcg tttcatgtgt ctgactatcc agtcatcatc       480
     actctcgaag atcatttgcc acccaagctt caagcgcaag ttgctaagat gttaactaaa       540
     acatacagag ggatgctgtt tcgtcgtgtc tcagagagtt ttaagcattt tccatcacca       600
     gaagaactta aggggaagat cctgatctct acgaagcctc caaaggagta tcttgagagc       660
     aaaactgtac acaccacaag aactccaacg gttaaagaga cttcgtggaa cagagtagcg       720
     aacaagattc ttgaagaata taaagatatg gagagtgaag ctgtaggata tagagacttg       780
     atagcaatcc acgctgcaaa ctgcaaagat ccttcaaagg attgcttgag tgatgatcca       840
     gagaagccta tacgggtcag catggacgag cagtggctag acactatggt taggaccaga       900
     ggaacggatc ttgtcaggtt tacacagagg aatctggtga ggatatatcc aaagggcaca       960
     agagtggact cgtcaaacta cgatcctcat gttgggtgga cacacggtgc tcaaatggtt      1020
     gcttttaaca tgcaaggaca tgggaagcaa ctatggataa tgcaaggaat gttcaggggg      1080
     aatggtggat gtgggtacgt taaaaagcct cgcatcttgc tagacgagca cacactcttc      1140
     gacccttgca aaaggtttcc cattaagacc actcttaagg ttaagattta cactggcgaa      1200
     ggatgggatt tggatttcca tcatacacac tttgatcaat actctcctcc agatttcttc      1260
     gtcaagattg gaatagcagg agtaccgaga gacacggtct catacagaac ggaaacagct      1320
     gtcgatcagt ggtttcctat atggggcaac gacgagttcc tgtttcagct gtctgttcca      1380
     gaactggcgc ttctgtggtt caaagtccaa gactacgaca atgacaccca gaatgatttc      1440
     gcaggacaga catgtcttcc tctgccggaa ctgaagtccg gagttagagc cgtccggctt      1500
     cacgatcgaa caggcaaggc ctacaagaac acgaggcttc tcgtcagctt cgccttggat      1560
     cctccttata cgtttcgttg a                                                1581
//
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