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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAB61820; SV 1; linear; genomic DNA; STD; PRO; 1482 BP.
XX
PA   AL939116.1
XX
DE   Streptomyces coelicolor putative lyase precursor
XX
OS   Streptomyces coelicolor
OC   Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
OC   Streptomycineae; Streptomycetaceae; Streptomyces.
OX   NCBI_TaxID=1902;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1482
FT                   /organism="Streptomyces coelicolor"
FT                   /strain="A3(2)"
FT                   /mol_type="genomic DNA"
FT   CDS             complement(AL939116.1:236259..237740)
FT                   /transl_table=11
FT                   /gene="SCO3496"
FT                   /gene_synonym="SCE65.32c"
FT                   /product="putative lyase precursor"
FT                   /note="SCE65.32c, possible lyase precursor, len: 493 aa;
FT                   low similarity to SW:ALYP_PSESO (EMBL:D10336) Pseudomonas
FT                   sp. (strain OS-ALG-9) alginate lyase precursor (EC 4.2.2.3)
FT                   (poly(beta-D-mannuronate) lyase) (poly(ManA) alginate
FT                   lyase) Aly or AlyP, 398 aa; fasta scores: opt: 550 z-score:
FT                   593.8 E(): 1.1e-25; 29.5% identity in 380 aa overlap.
FT                   Contains possible signal peptide sequence and also a
FT                   Leucine TTA codon, possible target for bldA regulation"
FT                   /db_xref="GOA:Q9RKE2"
FT                   /db_xref="InterPro:IPR012334"
FT                   /db_xref="UniProtKB/TrEMBL:Q9RKE2"
FT                   /protein_id="CAB61820.1"
FT                   /translation="MNRPRLSTYAAITVAAITIAALTTAASALASTGDTSSRTPSGNST
FT                   PQANATIVNVSSSTQLTTAMANAVAGQTIVLANGSYSIGKLNAKNGTSSAPITIMAAQQ
FT                   GKAIITGGQLEVLSSSYVTFSGLKWTNSNTLKITSSHHIRLTRNHFRLTESSSLKWIII
FT                   QGANSHHNRIDHNLFEEKHQLGNFITIDGSSTQQSQYDLIDYNHFRNIGPRATNEMEAI
FT                   RVGWSAISKSDGFTTVENNLFENCDGDPEIVSVKSNANTVRYNTFRTSQGSVSLRHGNR
FT                   SQVHGNFFFGGGKTGTGGVRVYGQDHKIYNNHFEGLTGTGYDAALQLDGGDVDTSGALS
FT                   SHWRVYRATAVHNTFVNNVSNIEIGANYSLAPVDSLVADNIVVGSSGKLFNELKMPKNM
FT                   TYAGNIGWPTGSATIGITTGVRTVNPLLAKQGEVYRLGTGSPAVNTASGSYSFLADDMD
FT                   GQSRSGTADVGADELSTGTVVHKPLNSADVGISAP"
XX
SQ   Sequence 1482 BP; 327 A; 538 C; 402 G; 215 T; 0 other; 4042214261 CRC32;
     atgaacagac caaggctcag cacctacgcc gcgatcaccg tcgcggccat cacgatcgcg        60
     gccctcacca ccgcagcatc cgctctcgcc tccaccggcg atacgtcgtc gcgcaccccg       120
     agcgggaact cgaccccaca ggccaacgcc accatcgtca acgtctcgtc gtcgacgcag       180
     ttgaccaccg cgatggccaa cgccgtagcc ggccaaacga tcgtcctcgc caacggctcc       240
     tactcgatcg gcaagctcaa cgccaagaac ggcacctcca gcgcacccat cacgatcatg       300
     gccgcccaac agggcaaggc gatcatcacc ggagggcagc tcgaggttct cagctcgtcg       360
     tacgtgacgt tctccgggct gaagtggacg aacagcaaca cgttgaagat caccagttcg       420
     caccacatcc ggttaacccg caaccacttc cggctcaccg agtcgagctc gttgaagtgg       480
     atcatcatcc agggagccaa cagccaccac aaccggatcg accacaacct gttcgaggag       540
     aagcaccagc tcggcaactt catcaccatc gacgggtctt cgacccagca gtcgcagtac       600
     gacctgatcg actacaacca ctttcgcaac atcggtccgc gcgccaccaa cgagatggag       660
     gcgatccggg tcggctggag tgcgatctcc aagtcggacg ggttcaccac ggtcgagaac       720
     aacctcttcg agaactgcga cggcgaccct gagatcgtct ccgtgaagag caacgccaac       780
     accgtccggt acaacacctt ccggacatca cagggctcgg tgtccctgcg ccacggcaac       840
     cgcagccagg tccacggcaa cttcttcttc ggaggcggca agaccggcac cggcggcgtc       900
     cgggtctacg gccaggacca caagatatac aacaaccact tcgaaggact gaccggcacc       960
     ggctacgacg cggcgctgca actcgacggc ggggacgtcg acacctcagg cgcgctctcc      1020
     tcgcactggc gggtgtaccg ggccacggca gtgcacaaca ccttcgtcaa caacgtctcg      1080
     aacatcgaga tcggcgccaa ctacagtctc gccccggtcg acagcctggt cgccgacaac      1140
     atcgtcgtcg gttcttccgg caagctcttc aacgagctga agatgcccaa gaacatgacg      1200
     tacgcgggca acatcggctg gccgacgggt tccgccacca tcgggatcac caccggcgtc      1260
     cgcaccgtga acccgctcct ggccaagcag ggtgaggtct accgcctcgg caccggtagc      1320
     cccgcggtga acaccgcgtc gggtagctac agcttcctcg ccgatgacat ggacggtcag      1380
     tcacgcagtg gaacggccga tgtcggagcg gacgaactgt ccaccggcac cgtggtccac      1440
     aagccgctca actccgccga cgtcggaatc agcgccccct ga                         1482
//
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