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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAB52919; SV 1; linear; genomic DNA; STD; PRO; 726 BP.
XX
PA   AL939104.1
XX
DE   Streptomyces coelicolor endo-1,4-beta-xylanase (putative secreted protein)
XX
OS   Streptomyces coelicolor
OC   Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales;
OC   Streptomycineae; Streptomycetaceae; Streptomyces.
OX   NCBI_TaxID=1902;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..726
FT                   /organism="Streptomyces coelicolor"
FT                   /strain="A3(2)"
FT                   /mol_type="genomic DNA"
FT   CDS             complement(AL939104.1:87907..88632)
FT                   /transl_table=11
FT                   /gene="SCO0105"
FT                   /gene_synonym="SCJ11.34c"
FT                   /gene_synonym="xlnC"
FT                   /product="endo-1,4-beta-xylanase (putative secreted
FT                   protein)"
FT                   /note="SCJ11.34c, xlnC, endo-1,4-beta-xylanase (putative
FT                   secreted protein), len: 241 aa; highly similar to many
FT                   endo-1,4-beta-xylanases e.g. SW:XYNC_STRLI from
FT                   Streptomyces lividans (240 aa) fasta scores; opt: 1605,
FT                   z-score: 1785.1, E(): 0, (97.9% identity in 241 aa overlap)
FT                   and SW:XYNA_BACSU from Bacillus subtilis (213 aa) fasta
FT                   scores; opt: 813, z-score: 910.7, E(): 0, (58.8% identity
FT                   in 221 aa overlap). Contains Pfam match to entry PF00457
FT                   Glyco_hydro_11, Glycosyl hydrolases family 11 and Prosite
FT                   matches to PS00777 Glycosyl hydrolases family 11 active
FT                   site signature 2 and PS00776 Glycosyl hydrolases family 11
FT                   active site signature 1"
FT                   /db_xref="GOA:Q9RI72"
FT                   /db_xref="HSSP:1HIX"
FT                   /db_xref="InterPro:IPR017909"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9RI72"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="CAB52919.1"
FT                   /translation="MQQDGTQQDRIKQSPAPLNGMSRRGFLGGAGTLALATASGLLLPG
FT                   TAHAATTITTNQTGTDGMYYSFWTDGGGSVSMTLNGGGSYSTQWTNCGNFVAGKGWSTG
FT                   GRRTVRYNGYFNPSGNGYGCLYGWTSNPLVEYYIVDNWGSYRPTGTYKGTVSSDGGTYD
FT                   IYQTTRYNAPSVEGTKTFQQYWSVRQSKVTSGSGTITTGNHFDAWARAGMNMGQFRYYM
FT                   IMATEGYQSSGSSNITVSG"
XX
SQ   Sequence 726 BP; 152 A; 256 C; 214 G; 104 T; 0 other; 3260968439 CRC32;
     atgcagcagg acggcacaca gcaggaccgg atcaagcaga gtcccgcccc tctcaacgga        60
     atgagccgac gaggcttcct cggtggcgcc ggcaccctcg cgctcgctac cgcgtccggg       120
     ctgctgctgc ccggcacagc ccacgccgcc actaccatca ccaccaacca gaccggcacc       180
     gacggcatgt actactcgtt ctggaccgac ggcggcggct ccgtctccat gacgctcaac       240
     ggtggcggca gctatagcac ccagtggacc aactgcggca acttcgtcgc cggcaagggc       300
     tggagcaccg gcggacgccg gacggtccgc tacaacggct acttcaaccc gtcgggcaac       360
     ggctacggct gcctctacgg ctggacctcg aacccgctgg tggagtacta catcgtcgac       420
     aactggggca gttaccggcc caccggtacg tacaagggca ccgtctccag tgacggaggc       480
     acctacgaca tctaccagac gacccggtac aacgccccct ccgtggaagg caccaagacc       540
     ttccagcagt actggagtgt ccggcagtcg aaggtgacca gtggctccgg caccatcacc       600
     accggcaacc acttcgacgc ctgggcgcgc gcgggcatga acatgggcca gttcaggtac       660
     tacatgatca tggccactga gggctatcag agcagtggaa gctcgaacat cacggtcagc       720
     ggttga                                                                  726
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