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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAB43040; SV 1; linear; genomic DNA; STD; PLN; 1878 BP.
XX
PA   AL049876.1
XX
DE   Arabidopsis thaliana (thale cress) putative glucanase
XX
OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
OX   NCBI_TaxID=3702;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1878
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="4"
FT                   /variety="Columbia"
FT                   /mol_type="genomic DNA"
FT   CDS             complement(join(AL049876.1:19268..19566,
FT                   AL049876.1:19670..19744,AL049876.1:19892..20240,
FT                   AL049876.1:20986..21270,AL049876.1:21371..21535,
FT                   AL049876.1:21623..21712,AL049876.1:21974..22174,
FT                   AL049876.1:22282..22494,AL049876.1:22881..23081))
FT                   /gene="AT4g11050"
FT                   /product="putative glucanase"
FT                   /note="strong similarity to endo-beta-1, 4-D-glucanase
FT                   (Cel8) - Lycopersiconesculentum (tomato), PID:g4165132"
FT                   /note="Contains ATP/GTP-binding site motif A (P-loop)
FT                   AA137-144;Glycosyl hydrolases family 9 active sites
FT                   signatures AA398-414;Glycosyl hydrolases family 9 active
FT                   sites signatures AA462-480"
FT                   /note="contains EST gb:AA664504, Z25957, R30071, T43127,
FT                   AI992509.1, AI993079.1, F14141, AI994893.1, T76139"
FT                   /db_xref="GOA:Q8L7I0"
FT                   /db_xref="HSSP:1IA6"
FT                   /db_xref="InterPro:IPR018221"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q8L7I0"
FT                   /func_characterised="similar sequence"
FT                   /protein_id="CAB43040.1"
FT                   /translation="MGSRTTISILVVLLLGLVQLAISGHDYKQALSKSILFFEAQRSGH
FT                   LPPNQRVSWRSHSGLYDGKSSGVDLVGGYYDAGDNVKFGLPMAFTVTTMCWSIIEYGGQ
FT                   LESNGELGHAIDAVKWGTDYFIKAHPEPNVLYGEVGDGKSDHYCWQRPEEMTTDRRAYK
FT                   IDRNNPGSDLAGETAAAMAAASIVFRRSDPSYSAELLRHAHQLFEFADKYRGKYDSSIT
FT                   VAQKYYRSVSGYNDELLWAAAWLYQATNDKYYLDYLGKNGDSMGGTGWSMTEFGWDVKY
FT                   AGVQTLVAKVLMQGKGGEHTAVFERYQQKAEQFMCSLLGKSTKNIKKTPGGLIFRQSWN
FT                   NMQFVTSASFLATVYSDYLSYSKRDLLCSQGNISPSQLLEFSKSQVDYILGDNPRATSY
FT                   MVGYGENYPRQVHHRGSSIVSFNVDQKFVTCRGGYATWFSRKGSDPNVLTGALVGGPDA
FT                   YDNFADQRDNYEQTEPATYNNAPLLGVLARLISGSTGFDQLLPGVSPTPSPVIIKPAPV
FT                   PQRKPTKPPASSPSPITISQKMTNSWKNEGKVYYRYSTILTNRSTKTLKILKISITKLY
FT                   GPIWGVTKTGNSFSFPSWMQSLPSGKSMEFVYIHSASPADVLVSNYSLE"
XX
SQ   Sequence 1878 BP; 529 A; 428 C; 423 G; 498 T; 0 other; 1072999494 CRC32;
     atgggttcta gaaccaccat ttcgattctt gttgttcttc ttctagggtt ggttcaactt        60
     gcaatttcag ggcatgacta taaacaagct ctaagcaaaa gcattctctt ctttgaagct       120
     cagagatcag gacacctccc tcctaaccaa agagtttcat ggcgatctca ttccggtctt       180
     tacgatggca aatcaagcgg cgtggatcta gtgggaggat attatgacgc cggagacaat       240
     gtgaaattcg ggcttccgat ggctttcacg gtgacaacaa tgtgttggag catcatagaa       300
     tacggtggcc agctggaatc caacggcgaa cttggccatg ccattgacgc cgttaagtgg       360
     ggaactgatt atttcattaa agcccaccct gaacctaacg ttctctatgg agaggtagga       420
     gatggtaagt cggaccatta ttgttggcaa aggccagagg aaatgactac tgatcgtagg       480
     gcttacaaaa ttgaccggaa caatcccggt tcggatctcg ccggagaaac cgctgccgca       540
     atggctgccg cttccatcgt tttccgtcgc tctgatccat catactctgc tgagctactc       600
     cgtcacgcac atcagctatt tgaatttgcg gacaaataca gaggcaaata tgacagcagc       660
     attaccgtgg cacaaaaata ttaccgatcc gtcagcggtt acaatgatga gttactatgg       720
     gctgctgcgt ggttatacca agcaacaaat gataaatact atctagatta cctcggcaag       780
     aatggcgact caatgggtgg tacgggctgg tcgatgaccg aatttggttg ggacgttaag       840
     tatgctggtg ttcaaaccct tgtggccaag gttttgatgc aaggaaaagg tggagaacat       900
     actgctgtgt tcgagaggta ccaacagaaa gcagaacagt ttatgtgttc gttgttaggt       960
     aaaagtacaa agaacattaa gaaaactcca gggggtttga ttttccgaca aagctggaat      1020
     aatatgcagt ttgtcacgag tgcttcattc ttagccactg tttactccga ctatctctcg      1080
     tactccaaaa gagatcttct ttgttctcaa ggaaacattt ctccatccca actcctagaa      1140
     ttttctaaat cacaggtgga ttacattctt ggagacaacc ctagagcaac aagttacatg      1200
     gtcggatacg gagagaacta tccacgacaa gttcatcatc gtggttcgtc tattgtctcc      1260
     ttcaatgtcg atcaaaagtt cgttacttgc cgtggtggtt acgccacatg gtttagccgg      1320
     aaaggaagcg atccaaatgt tttaaccgga gctctagtgg gtggacccga cgcctacgat      1380
     aacttcgctg accaacggga caattatgag caaaccgaac cagcaactta caacaacgcg      1440
     cctcttcttg gtgtattagc ccggttaatt tccggttcga ccggttttga ccagctgctt      1500
     cccggtgtta gtccgactcc aagtccggtt atcataaaac cagcaccggt accacaaagg      1560
     aaaccgacaa aacctcctgc ttcttctcct agtcccatta ccatatcgca gaagatgaca      1620
     aactcatgga agaacgaggg aaaagtgtac tatcgatact ctacgatatt aaccaataga      1680
     tctacgaaaa cattgaaaat tttgaagata tcaatcacca agctatacgg tccaatatgg      1740
     ggtgtgacga aaaccggaaa ttcattcagt tttccatcat ggatgcaatc tttaccatca      1800
     ggcaaaagca tggaatttgt ctatatccac tcagcttctc cggcagatgt cttggtttct      1860
     aactattctt tggaatga                                                    1878
//
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