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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   CAB41931; SV 1; linear; genomic DNA; STD; PLN; 1257 BP.
XX
PA   AL049751.1
XX
DE   Arabidopsis thaliana (thale cress) pectate lyase like protein
XX
OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
OX   NCBI_TaxID=3702;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1257
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="4"
FT                   /variety="Columbia"
FT                   /mol_type="genomic DNA"
FT   CDS             join(AL049751.1:27176..27252,AL049751.1:27501..27569,
FT                   AL049751.1:28466..29111,AL049751.1:29568..29671,
FT                   AL049751.1:29782..29920,AL049751.1:30050..30271)
FT                   /gene="F17N18.100"
FT                   /product="pectate lyase like protein"
FT                   /note="strong similarity to pectate lyase -Fragaria x
FT                   ananassa, PID:g2435395"
FT                   /db_xref="GOA:Q9SVQ6"
FT                   /db_xref="InterPro:IPR002022"
FT                   /db_xref="InterPro:IPR006626"
FT                   /db_xref="InterPro:IPR011050"
FT                   /db_xref="InterPro:IPR012334"
FT                   /db_xref="InterPro:IPR018082"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q9SVQ6"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="CAB41931.1"
FT                   /translation="MVVARTLFSISATLIIFLALFLHVNALSDGEWHEHAVKDPEEIAA
FT                   MVDMSIRNSTYRRKLGFFSSCSTGNPIDDCWRCDKKWHRRRKRLADCAIGFGRNAVGGR
FT                   DGRYYIVTDPSDHDPVTPKPGTLRYAVIQDEPLWIVFKRDMVITLSQELIMNSFKTIDG
FT                   RGVNVHIAGGACLTVQYVTNIIIHGINIHDCKRTGNAMVRSSESHYGWRTMADGDGISI
FT                   FGSSHIWIDHNSLSSCADGLIDAIMGSTAITISNNYLTHHNEAILLGHTDSYTRDKMMQ
FT                   VTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPGN
FT                   RFAKEVTKRVGAGKGEWNNWNWRSQGDLMLNGAYFTSSGAGASANYARASSLAAKSSSL
FT                   VGMLTSSSGALKCRIGTLC"
XX
SQ   Sequence 1257 BP; 359 A; 252 C; 298 G; 348 T; 0 other; 2619947295 CRC32;
     atggtggtcg ctagaacatt gttctcaatc tcagcaactc taatcatttt tctagcactc        60
     tttctccatg taaatgcttt atcagacggt gaatggcatg aacacgccgt taaagaccca       120
     gaagaaatag cagcaatggt cgatatgagc atacgtaaca gtacgtatcg tagaaagcta       180
     gggttcttct cctcatgctc aacaggaaac ccaatagatg attgttggcg atgcgataaa       240
     aaatggcatc gccgaagaaa gcgattagcg gattgcgcga tcggtttcgg acgtaacgca       300
     gtcggaggcc gtgatggacg ttactacatt gttactgatc catctgatca tgatccggtt       360
     acaccaaaac ccggtacact ccggtacgct gttatacaag acgaaccgct atggatcgtc       420
     tttaaacgtg acatggtcat tactttaagc caagaactaa tcatgaatag cttcaaaact       480
     atcgatggtc gtggtgtcaa cgtgcatata gctggtggtg catgtctcac ggttcagtac       540
     gttacgaata ttatcatcca tgggataaat attcatgatt gtaagcgaac tggtaacgct       600
     atggttagga gttcggagag tcattatggt tggagaacga tggcggatgg tgatggtatt       660
     tcgatttttg gatctagtca tatttggatt gatcataatt ctctttcgag ttgtgctgat       720
     ggattgatag acgcaattat gggatctact gctattacca tctctaataa ttatctcact       780
     caccacaacg aggctatttt gttggggcat accgattcat acaccagaga caaaatgatg       840
     caagtaacca ttgcatacaa ccattttgga gaaggtctta tacagagaat gccaaggtgc       900
     aggcatggat actttcacgt agtaaacaat gattacactc actgggaaat gtatgcaatt       960
     ggtggaagtg ctaaccctac catcaatagt caaggaaacc ggttccttgc cccgggaaac      1020
     cgtttcgcca aggaggtgac gaaacgggta ggtgcaggga aaggagaatg gaacaattgg      1080
     aattggagat cccaaggaga cttaatgcta aatggtgcct actttacttc atctggagct      1140
     ggagcttctg caaattacgc cagagcctct agtttggctg ctaaatcatc ttcccttgta      1200
     ggtatgctta cctctagctc gggtgctttg aaatgcagga tcggtacact ttgttaa         1257
//
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