EBI Dbfetch

ID   CAB08998; SV 1; linear; genomic DNA; STD; INV; 2361 BP.
XX
PA   Z95559.1
XX
DE   Caenorhabditis elegans C. elegans protein Y41E3.4, partially confirmed by
DE   transcript evidence
XX
OS   Caenorhabditis elegans
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis.
OX   NCBI_TaxID=6239;
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2361
FT                   /organism="Caenorhabditis elegans"
FT                   /chromosome="IV"
FT                   /strain="Bristol N2"
FT                   /mol_type="genomic DNA"
FT                   /clone="Y41E3"
FT   CDS             complement(join(Z95559.1:57889..58003,
FT                   Z95559.1:58063..58590,Z95559.1:59633..60279,
FT                   Z95559.1:60972..61457,Z95559.1:61780..62115,
FT                   Z95559.1:62187..62435))
FT                   /gene="ers-1"
FT                   /locus_tag="Y41E3.4"
FT                   /standard_name="Y41E3.4"
FT                   /product="C. elegans protein Y41E3.4, partially confirmed
FT                   by transcript evidence"
FT                   /note="C. elegans ERS-1 protein; contains similarity to
FT                   Pfam domains PF00749 (tRNA synthetases class I (E and Q),
FT                   catalytic domain) , PF04557 (Glutaminyl-tRNA synthetase,
FT                   non-specific RNA binding region part 2) (2), PF04558
FT                   (Glutaminyl-tRNA synthetase, non-specific RNA binding
FT                   region part 1) , PF03950 (tRNA synthetases class I (E and
FT                   Q), anti-codon binding domain) contains similarity to
FT                   Interpro domains IPR020060 (Glutamyl/glutaminyl-tRNA
FT                   synthetase, class Ic, N-terminal), IPR020056 (Ribosomal
FT                   protein L25/Gln-tRNA synthetase, beta-barrel domain),
FT                   IPR007639 (Glutaminyl-tRNA synthetase, class Ic,
FT                   non-specific RNA-binding region part 1), IPR000924
FT                   (Glutamyl/glutaminyl-tRNA synthetase, class Ic), IPR004514
FT                   (Glutaminyl-tRNA synthetase, class Ic), IPR020059
FT                   (Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon
FT                   binding domain), IPR001412 (Aminoacyl-tRNA synthetase,
FT                   class I, conserved site), IPR020061
FT                   (Glutamyl/glutaminyl-tRNA synthetase, class Ic,
FT                   alpha-bundle domain), IPR020058 (Glutamyl/glutaminyl-tRNA
FT                   synthetase, class Ic, catalytic domain), IPR007638
FT                   (Glutaminyl-tRNA synthetase, class Ic, non-specific
FT                   RNA-binding region part 2), IPR014729 (Rossmann-like
FT                   alpha/beta/alpha sandwich fold)"
FT                   /db_xref="GOA:O62431"
FT                   /db_xref="InterPro:IPR000924"
FT                   /db_xref="InterPro:IPR001412"
FT                   /db_xref="InterPro:IPR004514"
FT                   /db_xref="InterPro:IPR007638"
FT                   /db_xref="InterPro:IPR007639"
FT                   /db_xref="InterPro:IPR011035"
FT                   /db_xref="InterPro:IPR014729"
FT                   /db_xref="InterPro:IPR020056"
FT                   /db_xref="InterPro:IPR020058"
FT                   /db_xref="InterPro:IPR020059"
FT                   /db_xref="InterPro:IPR020060"
FT                   /db_xref="UniProtKB/Swiss-Prot:O62431"
FT                   /db_xref="WormBase:WBGene00001336"
FT                   /func_characterised="identical sequence"
FT                   /protein_id="CAB08998.1"
FT                   /translation="MATKEELLSLGLSDSKVAETLKNVKLTETIGSIVKLASESGEISK
FT                   QKGTLLYQLATKLKPQVAAHTPLVVKYIMNDGIKTEPQLSAAIEYLLSHTVKGIQVPDF
FT                   EKSCGVGVVVTIDDIEAAVTKVIGQHREKIVAERYSFPAGKLLGELRALLPWADGAITK
FT                   KEVDLRFLELLGPKTAEDLAPKKKEKKPEGPKPSKDAAAAATAPGTKNQKEASPEEFAD
FT                   GAETMDELLRTRAHFHKVGENFKQDGYVTTPKTAELLKAHVAAVGGKVVTRFPPEPNGV
FT                   LHIGHAKAININFGYAKAMGGVCNLRFDDTNPEKEEEKFFSAIEDIVHWLGYDPARVTH
FT                   SSDNFQQLYLWAVKLIQKGLAFVCHQKVEEMRGFEVQLSPWRERPIEENIQLFEDMKNG
FT                   KFDEGEATLRLKLTLEEGKVDPVAYRIKYVPHHRTGNQWCIYPTYDYTHCLCDSIENIT
FT                   HSLCTKEFQSRRSSYYWLCNALDIYCPVQWEYGRLNVNYTVVSKRKILKLITTKTVNDW
FT                   DDPRLFTLTALRRRGIPSEAINRFVAKLGLTMSQMVIDPHVLDATVRDYLNIHAPRTMA
FT                   VLEGLKLTIENFSELNLPSSVDVPDFPSDPTDPRKHSVSVDREIFIEKSDYKPDDSDKS
FT                   FRRLTPKQAVGLKHIGLVLRFVKEVKDAEGHVTEVVVKAEKLSEKDKPKAFIHWVAKPV
FT                   SCEVRLYDRLFKSKNPEDAQLVPGGFLSDINPDSLTVVYNALIDQSIAKSKVYDRFQFE
FT                   RIGFFCVDRDSTSSTLVFNRTVMLKDGGASGKN"
XX
SQ   Sequence 2361 BP; 669 A; 541 C; 583 G; 568 T; 0 other; 3982503668 CRC32;
     atggcaacaa aggaggagct tctctctttg ggcctctctg attcaaaagt agctgaaacg        60
     ctgaaaaatg tgaagctcac cgaaacgatc ggttcaattg tgaagcttgc gagcgagtct       120
     ggcgagattt ccaagcaaaa aggaacactt ttgtaccagt tggcgacaaa gttgaagcca       180
     caagtcgctg ctcacactcc actagttgtc aagtatatta tgaatgacgg gattaagaca       240
     gagccacagc tctccgcagc gatcgagtat cttctctcgc acaccgttaa aggtatccaa       300
     gtgcctgatt tcgagaaatc atgcggagtc ggcgttgttg tcacaatcga cgacatcgaa       360
     gcggccgtta ccaaggtgat tggccaacac cgcgagaaaa tcgtcgccga gcggtactcg       420
     ttcccggccg gaaagttgct cggcgagcta cgagctctgc ttccatgggc tgatggtgcg       480
     attacgaaga aggaggtgga tttgagattc ttggagctgc tcggaccgaa gactgcggag       540
     gatttggctc cgaagaagaa ggagaagaag ccggaaggcc cgaaaccttc caaagacgct       600
     gccgctgccg ccaccgctcc aggaaccaaa aatcaaaagg aagctagccc cgaagaattc       660
     gctgatggcg ccgaaaccat ggacgagctg ctccgcaccc gtgcgcattt ccacaaagtc       720
     ggagaaaact tcaagcaaga cggctacgtg accactccaa aaaccgcaga gcttctcaag       780
     gctcacgtgg cggctgtcgg agggaaggtg gtgacccgat tcccgcctga accaaatggt       840
     gttcttcata ttggacacgc gaaggcgatt aacatcaatt ttggatatgc taaagctatg       900
     ggtggtgtgt gtaatttgag atttgacgat acaaatccgg aaaaggaaga ggaaaagttc       960
     ttctctgcaa ttgaggatat tgttcattgg cttggatatg atccggctag agttactcac      1020
     tcttcggata attttcagca gctttatctt tgggctgtta agcttattca gaaaggactc      1080
     gctttcgtat gccatcaaaa agtcgaagaa atgcgcggtt tcgaagttca actgagcccg      1140
     tggcgtgagc gaccaatcga agagaacatc caactcttcg aagacatgaa aaatggaaaa      1200
     ttcgacgaag gagaagccac actccggctc aagttgacac tggaagaagg aaaagtcgat      1260
     ccagtcgcct accgtatcaa atatgttcca catcatcgaa ctggaaatca atggtgcatc      1320
     tacccgacct acgattatac ccattgcctt tgtgattcaa ttgaaaatat cactcattct      1380
     ctgtgcacca aagagttcca gtcgagaaga agctcatatt actggctctg taatgctcta      1440
     gatatctatt gtcctgttca atgggagtac ggtagactaa atgtcaacta tactgtggtc      1500
     tcgaagcgaa agattctcaa acttatcacc acaaaaaccg tcaacgattg ggatgatcca      1560
     cggttgttca cactgacagc actccgacgg cgtggtatcc catctgaggc gattaatcga      1620
     ttcgttgcga agctcggatt gacaatgtca cagatggtta ttgatccaca cgttcttgac      1680
     gcaactgtta gggattattt gaatattcac gcgccaagaa caatggccgt gctcgaggga      1740
     ttgaagctga caatcgaaaa cttttccgaa ctcaatctcc catcatccgt cgacgttcca      1800
     gacttcccat ctgatccgac tgatccacga aagcactcgg tatccgtcga tcgggagatt      1860
     ttcattgaaa agtccgacta taagccggat gattcggaca aatccttcag aaggctgacg      1920
     ccgaaacaag ccgtcggcct gaaacacatt ggattggtgc tccgattcgt gaaagaagtc      1980
     aaagatgccg agggtcacgt cacagaagtt gtggtgaagg ctgagaagtt gtcggagaag      2040
     gataagccga aagcatttat tcattgggtt gcaaagcctg tctcgtgtga agttcggctc      2100
     tatgatagac tattcaagag taagaatcca gaggatgctc aactagttcc aggtggattc      2160
     ctgtcggata tcaatccaga ttcattgaca gttgtctaca atgctctaat tgatcagtct      2220
     attgcaaaat caaaggttta tgatagattc caattcgaac gcatcggatt cttctgtgtc      2280
     gatcgtgatt cgacgtcttc aacgttggtc ttcaaccgaa ctgtcatgct gaaagacgga      2340
     ggagcttctg gaaagaattg a                                                2361
//