 |
|
EBI DbfetchID CAB07215; SV 2; linear; genomic DNA; STD; INV; 3960 BP. XX PA Z92789.1 XX DE Caenorhabditis elegans C. elegans protein H02I12.1, partially confirmed by DE transcript evidence XX OS Caenorhabditis elegans OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; OC Rhabditidae; Peloderinae; Caenorhabditis. OX NCBI_TaxID=6239; XX FH Key Location/Qualifiers FH FT source 1..3960 FT /organism="Caenorhabditis elegans" FT /chromosome="IV" FT /strain="Bristol N2" FT /mol_type="genomic DNA" FT /clone="H02I12" FT CDS join(Z92789.1:1693..1738,Z92789.1:1786..1880, FT Z92789.1:1926..2481,Z92789.1:2528..3136, FT Z92789.1:3183..4103,Z92789.1:4152..4430, FT Z92789.1:4478..4813,Z92789.1:4862..5289, FT Z92789.1:5336..5668,Z92789.1:5712..6068) FT /gene="cbd-1" FT /locus_tag="H02I12.1" FT /standard_name="H02I12.1" FT /product="C. elegans protein H02I12.1, partially confirmed FT by transcript evidence" FT /note="C. elegans CBD-1 protein; contains similarity to FT Pfam domain PF01607 Chitin binding Peritrophin-A domain FT contains similarity to Interpro domain IPR002557 (Chitin FT binding protein, peritrophin-A)" FT /db_xref="GOA:O45599" FT /db_xref="InterPro:IPR002557" FT /db_xref="UniProtKB/TrEMBL:O45599" FT /db_xref="WormBase:WBGene00010351" FT /protein_id="CAB07215.2" FT /translation="MGPQLATVSLLLLTFFSNSIQYPHSPAATECPAYFNGNIAGNACS FT REYSICVNGVRQAATCSDDSVFYEDECVPVDESPECRVDENTEEDDTPYAEFDCTSKQD FT GIYSIGCSNQFISCVAGGAYMAKCPDSLVFNERTQDCRESCDEVKQDTTTAPQVYEDGE FT EGYGEASGEIAGDYERQPSNEQPDSIDFDCNGLEDGNYADGCNDVFYSCSNNMVFQRYC FT PPGTVFNINQQSCDFQCTTDDPTTTVSYSTSTITTPQEDDSEYSSTTSADVISTTTTPS FT IDAIETTTTGFDAVTTTTTTQTPFVCQEGQVNSFGMCSSRFNRCQNNSVRSKQCPVNTL FT FESSLVMCVFDLPQCQPITVPAAPAYNSYGPPSDTIVSPFDENVRLKPKFDRRRKYHHG FT KPSYGPVNGNSYLENPFFIPRHRGGSHRDHRRYGYGPAIDSPFSTAFRGRAALSDQFKD FT YRRARMGKIQGDARKVDGNKRFLIDDEFEGPNAKFVESNIEQVFPKNRHSKKQLGPHED FT PDGYDDEKTFDAKDLFGATRRKRSAYYGTEQSVYGQQSAQISARQAQVNKDCQQYTTPT FT FLTFGDCFDQFIFCSGNGINRMAACPIGETFDKTLRSCSETCGVSTTIVAVTIGTQTSD FT DLSAPSEYIENDGVTTQSTWNDQPSTTQAPNSYESYTTQYSSNDVPSTSAAPIGDRCSL FT DASGLFSLGCSQKYIQCSNGAAIVRRCGESLYFNEATQECTYRDEVPECGSQGSTSSPV FT ITTPGQDQSSNYYGIPSDDVPSTTQTPVGDRCAYVASGLFDLGCSQKYIQCSDSAASVR FT ECEGSLYFDERSQSCRFRDEVFKCQTADVSSSSTVPYLDFTTTPASPSEDEPTTYEPSV FT APYIPSVTVNPVDTCTSLSDGTHGTGCSSFYFVCSHGRLISSGNCQLGEGYDPSVQGCR FT TFSEIPARACDEQEVTTDAGLVQLMPYKTLEEVLTTTEAATTVANDGPTDTYITGSTKY FT STTDSGEYTIPYGDETTSTRSYDRADNDSEDEEEDDVEHDQKCTVGSRTPVGFCVRTYL FT ECTDAGNVEKLCRIGKLFDSHSNRCVPRIGCGKEAIRDAIKDMIATTPAPAQPKQFEGR FT CAHVDGEAVFSIGVCSSKYLRCSYGASKLQQCSEDRVFSNDKLECIVRESVSACTVPKN FT PSIKKYYTSNDQSAFCDGKEDGLYRNERDCSAILQCFGGELFEHPSCQSSLAFNQLTGK FT CDYPQKVSGCENHGQTNGECSEHGSFIADANNCEVFYRCVWGRKVVMTCPSGTVFNPLL FT SVCDWPSAVPSCSGQASDSNSSYGSSTYNDDKSGY" XX SQ Sequence 3960 BP; 1122 A; 965 C; 905 G; 968 T; 0 other; 3254176976 CRC32; atggggccac agctagccac cgtctcgctg cttctactaa catttttttc gaattctatt 60 caatacccgc actcaccagc agccacagaa tgccctgcat acttcaacgg aaacatagca 120 ggaaatgcat gcagtcggga gtactcgata tgtgtgaacg gagtcaggca agcagccacc 180 tgcagcgatg attctgtctt ctacgaagac gaatgtgtgc cagtcgacga atctccagaa 240 tgtcgagtag atgaaaacac tgaagaagat gacaccccat atgcggaatt cgactgcaca 300 tcgaaacagg atggcatcta ctccattggc tgctctaacc agtttatcag ctgcgtcgcc 360 ggcggagcct acatggcgaa atgtcctgat agcttggtct ttaacgaaag aacccaagat 420 tgtcgtgaat cttgcgacga agtgaaacag gacacaacta ctgcaccaca agtctacgaa 480 gatggtgaag aaggatacgg agaagcttcc ggtgagattg ctggagatta cgaacgtcaa 540 ccgtcgaacg agcagccgga ttcaattgac ttcgattgca acggtctgga agacggaaac 600 tacgccgacg gttgcaatga cgtattctac tcatgcagca acaacatggt gttccagaga 660 tactgtccac cgggaacagt tttcaatatc aatcaacagt cctgcgattt ccaatgcacg 720 accgatgatc caacgaccac tgtatcgtac tcaacttcta caatcacaac accgcaagaa 780 gatgacagtg aatacagctc aacaacttcc gctgatgtca tctcaacaac aacaacacct 840 tcaattgatg ctattgagac aactacgact ggatttgatg ccgtgacaac gacaacaacg 900 acgcaaactc cgttcgtttg tcaggaggga caagtcaact ccttcgggat gtgttcgtca 960 cgattcaatc gttgtcagaa caactcggtg cgttcaaagc aatgtccagt caacactctc 1020 ttcgagtcct ctctcgttat gtgcgtgttc gatttgccac aatgtcaacc aatcactgtt 1080 cccgccgctc ctgcgtacaa ctcttacggg cctccatcgg ataccatcgt cagtccattt 1140 gatgagaacg ttcgtctgaa accaaaattc gacagaaggc gtaagtatca tcatgggaag 1200 ccgagttacg gaccggtaaa tggaaactcg tatcttgaga atccattctt catccctcga 1260 caccgtggag gcagccacag agatcatcgc cgctatggtt atggaccggc cattgattct 1320 ccattctcaa ccgctttccg tggtcgtgct gcacttagcg atcaattcaa agactaccgc 1380 cgtgcaagaa tgggaaagat ccaaggagat gccaggaagg ttgatggaaa caaacgtttc 1440 ttgattgatg atgagttcga agggccaaac gcgaagtttg ttgaatctaa cattgagcaa 1500 gtattcccga agaatcgtca ttcaaaaaaa cagttgggac cacatgagga tccagacggc 1560 tatgacgacg agaaaacgtt cgacgcaaaa gatttgttcg gagccacgag aaggaagcgt 1620 tcagcctact acggaactga acaatctgta tatggacagc agtctgcaca aatatctgct 1680 cgacaagctc aagtaaacaa ggactgtcaa caatacacta ctcccacttt ccttacattc 1740 ggcgactgtt tcgatcagtt cattttctgc tctggaaacg gaatcaatcg tatggcagct 1800 tgtccaattg gagaaacatt cgacaaaact cttcgttctt gctcagaaac gtgcggtgtt 1860 tcaacaacaa tagtcgctgt cacaatcgga acacagactt cagacgattt atctgcacct 1920 tctgagtaca ttgagaatga cggcgtcact actcaatcaa catggaatga tcaaccatca 1980 accactcagg ctccaaattc atacgaatct tacaccaccc aatactcttc aaatgacgtg 2040 ccatcgactt cagctgctcc cattggggat cgttgttcat tggacgcatc aggccttttc 2100 tcacttggat gctcgcaaaa atacattcaa tgttctaatg gagcagcaat tgtgcgtcgt 2160 tgtggagaat cgttgtattt caatgaggcc acacaagagt gtacttacag agatgaagtt 2220 ccagagtgcg gatcccaagg atctacaagt tcacctgtta tcactacacc aggccaggat 2280 cagtcatcga actactacgg aatcccatcg gatgatgtcc catccaccac acaaacgccg 2340 gttggagatc gatgcgctta tgttgcttct gggctttttg atctaggttg ctcgcaaaag 2400 tacatccagt gctcggatag tgctgcatct gtgagagaat gtgaagggtc tctgtatttc 2460 gatgaacgaa gccaaagttg ccgtttcaga gacgaagtgt tcaaatgcca aacagcagac 2520 gtaagttctt cgtcgactgt tccgtatttg gacttcacaa ctactccagc atcgccatca 2580 gaggatgagc caacaacgta tgaaccttcc gtggcaccgt acattccgtc ggttactgtc 2640 aacccagttg atacctgcac aagtctctca gatggaactc atggaacggg atgctcatcg 2700 ttttacttcg tctgttcaca tggacgcctt atcagttcgg gtaactgcca gctgggtgaa 2760 ggttacgatc catcagtaca aggttgccgg actttcagtg aaattccagc tcgagcttgt 2820 gatgagcagg aagttacgac agatgctggt cttgttcagt taatgccgta caagacatta 2880 gaagaggttc ttacgacaac tgaggctgct actacagttg caaatgacgg gccaacggac 2940 acctacatca ctggctccac taaatattct acaacagaca gcggtgaata cactattcca 3000 tacggagatg aaaccacgtc tactagatcc tatgaccgag ccgataatga cagcgaagac 3060 gaagaagagg atgacgtgga gcacgaccaa aaatgcaccg ttggatcacg tacccccgtt 3120 ggattctgcg ttcgcacata cctggaatgt accgacgccg gaaacgttga gaaattgtgc 3180 aggattggga aactcttcga ttctcactct aacagatgcg ttcctagaat cggttgtgga 3240 aaggaggcta ttcgtgatgc tatcaaggat atgattgcaa caacgcccgc tcctgctcaa 3300 ccaaagcagt ttgaaggacg atgtgcacat gtggacgggg aagctgtctt ttctattggt 3360 gtctgcagca gcaaatatct cagatgctcg tacggtgctt caaaacttca acaatgttcc 3420 gaagatcgtg ttttttcaaa tgacaagttg gagtgtatcg ttagagaatc tgtatccgcg 3480 tgtactgttc cgaaaaatcc gtccatcaag aagtactaca ccagtaatga tcagtccgct 3540 ttttgtgatg gaaaggaaga tggcctttac agaaacgaaa gagattgttc ggcaattctt 3600 cagtgcttcg gaggagaact gttcgaacat ccatcatgtc aatccagcct tgcattcaat 3660 caattgaccg gcaaatgcga ctacccacaa aaagtcagtg gatgcgagaa ccatggtcaa 3720 accaatggag aatgctccga acatggatct ttcatcgctg atgccaataa ctgcgaagtt 3780 ttctatcgat gcgtgtgggg acgaaaggtt gtgatgacgt gcccatcggg aaccgtgttc 3840 aatccattgt tgtccgtttg cgattggcca agcgcagtac catcttgttc tggccaagcg 3900 tctgacagca actcttcata cggcagttcg acgtacaatg atgataaatc gggatattga 3960 // |
|